BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01170.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927659 jgi|Araly1|927659|scaffold_300116.1 821 0.0
> Ahg927659 jgi|Araly1|927659|scaffold_300116.1
Length=734
Score = 821 bits (444), Expect = 0.0
Identities = 629/710 (89%), Gaps = 45/710 (6%)
Strand=Plus/Plus
Query 391 TTTGTGAGTGAGATGGTATATTTGCATAGCTCAATCTCGGTCTGCAATTCCGTCG----A 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 10 TTTGTGAGTGAGATGGTATATTTGCATAGCTCAATCTCGGTCTGCAATTCCGTCGACCAA 69
Query 447 -C-CCAA---TGATCATG------TC---TCACT-C-C-----T-CA-CCTAAATCCAGA 483
| |||| |||||||| || ||||| | | | || || ||||| |||
Sbjct 70 GCTCCAACTTTGATCATGTCCAACTCTGTTCACTCCTCAGATTTGCATCCAAAATCGAGA 129
Query 484 AACACCCGTAATAAA---TCTT---CATCATCACC---AACCTGTTCCAAATTCCCTGTC 534
|||||||||| ||| |||| |||||||||| ||||||||||||||||||||||
Sbjct 130 CACACCCGTAAGAAATCTTCTTACACATCATCACCAATAACCTGTTCCAAATTCCCTGTC 189
Query 535 TGCGACGGATCTCAGTCCGCTGCTATCGACGTCGTGATCCTTATCGCGGTCATCACCGCC 594
||||| || ||||| || ||||||||||||||||| ||||||||||| || |||||||||
Sbjct 190 TGCGATGGGTCTCAATCGGCTGCTATCGACGTCGTCATCCTTATCGCCGTGATCACCGCC 249
Query 595 TGCGGCTTCCTCTTCTTCCCTTACGTCAAACTCATCACCCTCAAATCGATTGAGGTCTTT 654
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TGCGGGTTCTTGTTCTTCCCTTACGTCAAACTCATCACCCTCAAATCGATTGAGGTCTTC 309
Query 655 TCAGATCTCTCTCTTTTAGTCAAACAAGAGATTTTGCAGAACCCGATTGTGTATGGATCA 714
|| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 310 TCGGATCTCTCGGTTTTAGTCAAAGAAGAGATTTTGCAGAACCCGATTGTGTATGGATCA 369
Query 715 TTAGCTTTGAGTATCTTCTGTGCTGCCATCTCTACTTGGCTTGTTATACTCTTGTGTACT 774
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 370 TTAGCTTTGAGTATCTTCTGCGCTGCGATCTCCACTTGGCTTGTTATACTCTTGTGTACT 429
Query 775 ATGCAGAGATGCGGCAAACCGAATTGTAAAGGCCTTAGGAAAGCTGTTGAGTTTGATATT 834
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 430 ATGCAGAGATGCGGGAAACCGAATTGCAAAGGGCTTAGGAAAGCTGTTGAGTTTGATATT 489
Query 835 CAGCTTGAGACTGAGGAATGCGTCAAGAGCTC------CA---GCAACAAGAGGGGAATG 885
||||||||||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 490 CAGCTTGAGACAGAGGAATGCGTGAAGAGCTCGAATAACAATAGCAACAAGAGGGGAATG 549
Query 886 TTTGAGTTGCCTCGTGTTCATCACCGTGAATTGGAAGCTGAGCTGAAGAAGATGGCTCCG 945
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 550 TTTGAGTTGCCTCGTGTTCATCACCGTGAATTGGAAGCCGAGCTGAAGAAGATGGCACCG 609
Query 946 CCTAATGGGCGAGCCGTGCTTGTTTTCAGAGCGAGGTGTGGTTGTTCTGTAAGGAGATTA 1005
||||||||||||||||| || |||||||||||||| |||||||||||| |||||||||||
Sbjct 610 CCTAATGGGCGAGCCGTTCTGGTTTTCAGAGCGAGATGTGGTTGTTCTATAAGGAGATTA 669
Query 1006 GTCGTTTCCGGGCCAAAGAAGCAGCAGAGGAAGATCAAGAAATGAATAAG 1055
|| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 670 GTGGTTTCAGGGCCAAAGAAGCAGCAGAGGAAGATCAAGAAATGAAAAAG 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5