BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01175.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477412 jgi|Araly1|477412|fgenesh2_kg.3__113__AT3G01175.1 1528 0.0
> Ahg477412 jgi|Araly1|477412|fgenesh2_kg.3__113__AT3G01175.1
Length=1193
Score = 1528 bits (827), Expect = 0.0
Identities = 1106/1232 (90%), Gaps = 54/1232 (4%)
Strand=Plus/Plus
Query 1 TCTCAGACATTTGATGGCTTTACTCTCAGCATGTTGGCTAATGATAGAATCCATAGTGAT 60
|||| || |||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTCTGAAATTTGATGGCGGTACTCTCAGCATGTTGGCTAATGATAGAATCCTTAGTGAT 60
Query 61 TCAAGATGGTTTCTTGAAATCGTCTTACATGAAATTATACATGCACCCTCTTGTTCTCTT 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAAGATGGTTTCTTGAAATTATCTTACATGAAATTATACATGCACCCTCTTGTTCTCTT 120
Query 121 TCTTTGTCAACTTCTTATATGGCTTTATCTCTTCTTTTTATGGCTTCTCCCACCCTTTCA 180
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 121 TCTTTGCCAACTTCTTATATGGCTCTATCTCTTCTTTTTATGGCTTCTCACACCCTTTCA 180
Query 181 AGC-TCTTTACAACGCCTTTTCATCGGTCTTGTTCACGTTCTCTAAGCTAGTTAGTAGTT 239
|| | |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 181 GGCGT-TTTACAACACCTTTTCATCGGTCTTGGTCACTTTCTCTAAGCTAGTTAGTAGTT 239
Query 240 CTT-TCCGAGTCATTATGTTTAAAAAGGAGGTTACTTGTCA-TATTGAGTCTAGGCAAGA 297
|| |||||||||||||| ||| |||||||||||| ||| | | ||||||||||||||||
Sbjct 240 -TTCTCCGAGTCATTATGGTTAGAAAGGAGGTTACATGT-AGTGTTGAGTCTAGGCAAGA 297
Query 298 GATCAAGAATACCCTTGATAACTTGGAACTCTCTACAAGTACTCATAACCCGGTTCCTGC 357
|||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 298 GATCAAGAATACCCTTGATAACTTGGAACTTTCTAGAAATACTCATAACCCGGTTCCTGC 357
Query 358 ATTTAGCTTTTCGTTTAAATATCAAGTGGATAGTCATTTAAAAGTTC-GTATATCTATGC 416
||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |||
Sbjct 358 CTTTAGCTTTTCGTTTAAATATCAAGTGGATAGTCAACTAAAAGTTCGGT-TATCTCTGC 416
Query 417 AAAAAGGCAAGATTCTTGAAGAAGAAGAAGATGTGGATGATTTTTTCTATGAATATGATC 476
||||||||||||||||| |||||||||||||| ||||||| ||||||||||| ||||
Sbjct 417 AAAAAGGCAAGATTCTT---GAAGAAGAAGATGTTGATGATTGTTTCTATGAATTTGATG 473
Query 477 AAGAAGATGTTGTTGAGCTTCTTGATGCTAAGGAGGTTGAGGAGGAACACGACGTTGACA 536
|||||||||||| |||||||||||||||||| |||| ||||||||| | ||| ||||||
Sbjct 474 AAGAAGATGTTGGTGAGCTTCTTGATGCTAAAGAGGGCGAGGAGGAAGAAGACATTGACA 533
Query 537 TTTTTGATGGTGTAAACATGGAGAAGAATCTTGAGTTCGAAATTCAAACTATGCCAATAC 596
|| |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 534 TTGTTGATGCTGTAAACATGGAGAAGAATCTTGGGTTCGAAATTCAGACTATGCCAATAC 593
Query 597 ATCAAGAAGATGAAGCTTCTTTAACCAACGATGACGAAGAAG---AAGA--A-ATTGTAA 650
|||||||||||||| ||| ||| || | ||| ||||||||| |||| | |||||||
Sbjct 594 ATCAAGAAGATGAAAATTCATTAGCCGATGATAACGAAGAAGAACAAGAGGAGATTGTAA 653
Query 651 ACTCAGACGTGGAGAATGATCTATCTTTTCTAGTTTCTAGCAAAAGAGATCATCCCTCGC 710
||||||||||||||||||||||||||| |||||| |||||| | ||||| ||| ||||||
Sbjct 654 ACTCAGACGTGGAGAATGATCTATCTTCTCTAGTATCTAGCGATAGAGAGCATTCCTCGC 713
Query 711 CTTTATCTATTGCAAGCTTGGATTCAGCGCTCCAAGATTCGGTTACGATAGAGAATATTC 770
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 714 CTTTATCTATTGCAAGCTTGGATTCAGCGCTCCAAGATTCGGTTGTGATAGAGAATGT-- 771
Query 771 AAACACAAGGAGTTGAAGATGACCATGTATACAAGAAATATTGCGAAAGAATGAGATGGT 830
| ||| | | | | | | || || | |||| | || || || ||||
Sbjct 772 ATACA-A-G-A-T--A---T-AC--TG----C--GAAA----G-GAT-GA--GA--TGGT 803
Query 831 ATGACATCCTCAGCCGCGATAGAAGCTATGGACTAAATGTGATCACAAACCAACTAACGG 890
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 804 ATGACATCCTCAGCCGCGATAGAAGCTATGGACTAGGTGTGATCACAAACCAACTAACGG 863
Query 891 CAAGTAGTTTGAGCTTATGGGGGAAAAC-GGCAGAGAAGAGGATAAAACAAAGCATGAAG 949
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 864 CAAGTAGTTTGAGCTTATGGGG-AAAACCGGCAGAGAAGAGGATAAAACAAAGCATGACG 922
Query 950 AAGGACCTTGAGCTAGTCTATGTTGCTCAAGT-GTGCTTGTCATGGGAAGCTCTTCAGCA 1008
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 923 AAGGACCTTGAGCTAGTCTATGTTGCTCAA-TCGTGCTTGTCATGGGAAGCTCTTCAGCA 981
Query 1009 TCAGTACATTTTAGTGAGAGATAGTTCGAACCCCGCTGATTCGAGAGGCAGGTTCGATGA 1068
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 982 TCAGTACATTACAGTGAGAGATAGTTCGAACCTCGCTGATTCGAGAGGCAGGTTCTATGA 1041
Query 1069 TGAT-ATATCT--AGAGAGTTTCAGAACTTTCAGGTCTTGTTAGAGAGGTTCTTGGAAGA 1125
||| |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1042 CGATGATATCTCCAGAGAGTTTCAGAACTTTCAGGTTTTGTTAGAAAGGTTCTTGGAAGA 1101
Query 1126 TGAGAGGTGTGAAGGAAAACGAGTCTTGAGCTTTGTTCAAAGAAGATTTGAGTTGATTAG 1185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1102 TGAGAGATGTGAAGGAAAACGAGTCTTGAGCTTTGTTCAAAGAAGATTTGAGTTGATAAG 1161
Query 1186 CTTCTTTCAAGTCCCAAGACTTTCGGGTAAAT 1217
|||||| ||||||||||||||||| |||||||
Sbjct 1162 CTTCTTACAAGTCCCAAGACTTTCAGGTAAAT 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5