BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01185.1

Length=830
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927656 jgi|Araly1|927656|scaffold_300113.1                        579    1e-164


> Ahg927656 jgi|Araly1|927656|scaffold_300113.1
Length=493

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 419/469 (89%), Gaps = 11/469 (2%)
 Strand=Plus/Plus

Query  315  aaaaa-aaTGAAGAA-AAATAATCACGTTTACATGGCTTTTGTTCTAATCACCACGTTGG  372
            ||||| |||||| ||  ||||||   ||||||||||| ||| ||||||||||||||||||
Sbjct  14   AAAAATAATGAA-AACTAATAATTGTGTTTACATGGCATTTCTTCTAATCACCACGTTGG  72

Query  373  TACTGTTTGCTTATCCAAGTTTGGC------AGATGATGAGAAACCGTTGATAGATCCCA  426
            || ||||||||| ||||||||||||      || | ||||||||||||||||||||||||
Sbjct  73   TATTGTTTGCTTGTCCAAGTTTGGCTTTTGAAGGTAATGAGAAACCGTTGATAGATCCCA  132

Query  427  ATATTGATTTAGATTCCACGTTTGCAAGATCTCCGAGTACGAGTGAATACAATATAGACA  486
            ||||||||||||| || || |||||||||||||||||||||||||||||| ||| |||| 
Sbjct  133  ATATTGATTTAGACTCGACTTTTGCAAGATCTCCGAGTACGAGTGAATACGATAGAGACG  192

Query  487  TGCTTAATAAACAGTCAACAGAACTTGTTCAGTTTGCCGGGACTTGCGCTGGCTTGATGG  546
            |||||||||||||||||| |||||||||| ||| ||| |||||||||| ||   ||||||
Sbjct  193  TGCTTAATAAACAGTCAAAAGAACTTGTTGAGTATGCAGGGACTTGCGGTGAAATGATGG  252

Query  547  GGGGAGA-AAAATGTAGCGATCAAGTCATGTCTGAGATTCTTCAAAACATACCAACTTCG  605
            | ||| |  ||||||| |||| |||| ||||||||||||||||| || | ||||||||||
Sbjct  253  GAGGA-ATTAAATGTAACGATGAAGTGATGTCTGAGATTCTTCAGAATAAACCAACTTCG  311

Query  606  AGGTATTGTTGTCTGAAAATGATCATATATGGCCAAGAATGTCACATGGTGCTGAGGAAT  665
            |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  312  AGGTATTGTTGTATGAAAATGATGATATATGGCCAAGAATGTCACATGGTGCTGAGGAAT  371

Query  666  CTTTTGTTTCAGACTTATTATTACAAACCATTTGCCTCTAAAGGTCGTCCCAGGATTCTT  725
            || || ||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct  372  CTATTCTTTGAGACTTATTATTACAAACCATTTGCTTCTAAAGGTCGTCCCAGGATTCCT  431

Query  726  AAAGTTTGGAACAGATGTTCTGCTGAAGTTGGTGGTTTTTAACCATTTT  774
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  432  AAAGTTTGGAACAGATGTTCTGCTGAAGTTGGTGGTTTTTAACCATTTT  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30688948185


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5