BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01190.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927655 jgi|Araly1|927655|scaffold_300112.1 1557 0.0
Ahg941002 jgi|Araly1|941002|scaffold_601546.1 446 2e-124
> Ahg927655 jgi|Araly1|927655|scaffold_300112.1
Length=1009
Score = 1557 bits (843), Expect = 0.0
Identities = 955/1010 (95%), Gaps = 3/1010 (0%)
Strand=Plus/Plus
Query 41 CTAAAGATT-TTTTAAGAAAATGGCAGCTTCTAAGCGACTAGTTGTCTCTTGCTTGTTCT 99
||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTAAATATTGTTTTCAGAAAATGGCAGCTTCTAAGCGACTAGTTGTCTCTTGCTTGTTCT 60
Query 100 TAGTTTTGTTGTTTGCTCAAGCCAATTCGCAAGGTTTGAAAGTAGGTTTCTACAGCAAAA 159
|||| |||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 61 TAGTGTTGTTGTTTGCTCAAGCCAAATCACAAGGTTTGAAAGTAGGGTTCTACAGCAAAA 120
Query 160 CATGCCCACAACTCGAGGGTATAGTTAAAAAGGTCGTGTTCGATGCGATGAACAAAGCAC 219
||||||||||| |||||||||| |||| |||||| ||||||||||||||||| |||||||
Sbjct 121 CATGCCCACAAGTCGAGGGTATTGTTAGAAAGGTAGTGTTCGATGCGATGAAGAAAGCAC 180
Query 220 CAACACTTGGTGCTCCTTTGCTTAGAATGTTCTTCCACGACTGCTTCGTTCGGGGATGTG 279
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTACAGTTGGTGCTCCTTTGCTTAGAATGTTCTTCCACGACTGCTTCGTTCGGGGATGTG 240
Query 280 ACGGATCAGTTTTGTTAGATAAACCAAACAATCAAGGTGAGAAGAGTGCAGTTCCTAACC 339
|||||||| | ||| |||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 241 ACGGATCAATCTTGCTAGATAAACCGAACAATCAAGGTGAGAAGAGTGCGGTTCCTAACC 300
Query 340 TAAGTCTTCGAGGGTTTGGCATCATAGACGATTCCAAGGCGGCTCTAGAAAAAGTGTGTC 399
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 TAAGCCTTCGAGGTTTTGGTATCATAGACGATTCCAAGGCGGCTCTAGAAAAAGTTTGTC 360
Query 400 CGGGAATTGTTTCTTGCTCTGATATCTTGGCACTTGTCGCTAGAGACGCAATGGTTGCAC 459
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 361 CGGGAATTGTTTCTTGCTCTGATGTCTTGGCACTTATCGCTAGAGACGCAATGGTTGCAC 420
Query 460 TTGAAGGACCATCATGGGAAGTTGAAACGGGAAGAAGAGACGGTAGGGTTTCTAACATCA 519
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 421 TTGAAGGACCATCGTGGGAAGTTGAAACTGGAAGAAGAGACGGTAGGGTTTCTAATATCA 480
Query 520 ACGAAGTCAACTTGCCATCACCTTTTGATAACATCACCAAGCTTATCAGCGATTTTCGCT 579
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 481 ACGAAGTCAACTTGCCATCACCTTTTGATAACATCACCAAGCTTATCAACGATTTTCGCG 540
Query 580 CAAAGGGCCTCAACGAGAAGGATCTAGTCATTCTCTCGGGTGGTCACACAATTGGAATGG 639
||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||
Sbjct 541 CAAAGGGCCTCAACGAGAAGGATCTAGTCGTTCTCTCAGGTGGGCACACTATTGGAATGG 600
Query 640 GACATTGTCCTTTATTGACAAACCGGCTTTACAACTTCACCGGAAAAGGAGACAGCGACC 699
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 601 GACATTGTCCTCTATTGACAAACCGGCTTTACAATTTCACCGGAAAAGGAGACAGCGACC 660
Query 700 CAAGTTTGGACTCGGAGTACGCCGCTAAGCTCAGGAAGAAATGCAAGCCCACCGATACGA 759
| ||||||||| | |||||||| |||||||||||| |||||||||||||||||||||| |
Sbjct 661 CGAGTTTGGACACAGAGTACGCTGCTAAGCTCAGGCAGAAATGCAAGCCCACCGATACCA 720
Query 760 CGACGGCTCTAGAGATGGATCCGGGGAGTTTCAAAACATTTGACTTGAGCTACTTCACGC 819
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 721 CGACGGCTCTAGAGATGGATCCGGGGAGTTTCAAAACATTCGACGTGAGCTACTTCACGC 780
Query 820 TAGTGGCTAAGAGAAGAGGACTTTTCCAGTCGGATGCTGCTCTACTCGACAACTCCAAGA 879
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 781 TAGTGGCTAAGAGAAGAGGACTTTTCCAGTCGGATGCTGCTCTATTGGACAACTCCAAGA 840
Query 880 CTAGGGCTTATGTCTTGCAACAGATAAGAACTCATGGGTCAATGTTCTTTAACGACTTTG 939
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 841 CTAGGGCTTATGTCTTGCAACAGGCAAGAACTCATGGGTCAATGTTCTTTAGTGACTTTG 900
Query 940 GTGTCTCTATGGTGAAAATGGGTCGGA-CTGGAGTTCTTACGGGTAAGGCCGGGGAGATC 998
||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct 901 GTGTCTCAATGGTGAAAATGGGTCGGATC-GGAGTTCTTACGGGTCAGGCCGGGGAGATC 959
Query 999 CGTAAGACGTGTCGGTCTGCTAATTAAGAGATATAGAAATGAAAATATCT 1048
||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 CGTAAGACGTGTCGGTCTGCTAATTAAGAGATATAAAAATGAAAATATCT 1009
> Ahg941002 jgi|Araly1|941002|scaffold_601546.1
Length=1036
Score = 446 bits (241), Expect = 2e-124
Identities = 696/907 (77%), Gaps = 66/907 (7%)
Strand=Plus/Plus
Query 113 TGCTC-AAGCCAATTCGCAAGGTTTGAAAGTAGGTTTCTACAGCAAAACATGCCC-ACAA 170
||||| || ||||| | ||||| ||||||| || ||||||| ||| ||||||| | ||
Sbjct 92 TGCTCTAA-CCAATGCACAAGGACTGAAAGTTGGGTTCTACAACAAGGCATGCCCGA-AA 149
Query 171 -CTCGAGGGTATAGTTAAAAAGGTC-GTGTTCG--ATGCGATGAACAAAGCA-CCAACAC 225
| |||| | | ||||| || ||| | |||| ||| | |||| ||| | ||| |||
Sbjct 150 GC-CGAGCTTGTTGTTAAGAA-GTCTATCTTCGACATG-G-TGAA-GAAGGATCCATCAC 204
Query 226 TTGGTGCTCCTTTGCTTAGAATGTTCTTCCACGACTGCTTCGTTCGGGGATGTGACGGAT 285
|||| |||||||||||||| ||||||||||||| |||||||||||||||||||| || |
Sbjct 205 TTGGACCTCCTTTGCTTAGACTGTTCTTCCACGATTGCTTCGTTCGGGGATGTGAAGGGT 264
Query 286 CAGTTTTGTTAGA--TAAACCAAACAATCAAGGTGAGAAGAGTGCAG-TTCCTAACCTAA 342
| || ||| |||| |||| ||||| ||| |||||||| || | ||||||||| |
Sbjct 265 CGGTCTTGCTAGAGTTAAA--GAACAAAAAAGCTGAGAAGAACGC-GCCTCCTAACCTCA 321
Query 343 GTCTTCG-AGGGTTTGGCATCATAGACGAT-TCCAAGGCGGCTCTAGAAAAAGTGTGTCC 400
| | ||| |||||||| |||||||| || | |||||| ||||||||||| | |||||
Sbjct 322 G-CCTCGAAGGGTTTGATTTCATAGACAATAT-CAAGGCAGCTCTAGAAAAGGAATGTCC 379
Query 401 GGGAATTGTTTCTTGCTCTGATATCTTGGCACTTGTCGCTAGAGACGCAATGGTTGCACT 460
|| |||||||||||||| ||| ||||||| ||||| |||||||||| | ||||||| |
Sbjct 380 AGGCATTGTTTCTTGCTCAGATGTCTTGGCCCTTGTTGCTAGAGACGTAGTGGTTGCGC- 438
Query 461 TGAA-GGACCATCATGGGAAGTTGAAACGGGAAGAAGAGACGGTAGGGTTTCTAACATCA 519
| || ||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||
Sbjct 439 TCAATGGACCGTCATGGGAAGTTGAAACGGGAAGAAGAGACGGTCGGGTTACAAACATCA 498
Query 520 ACGAAG-----TCAA-CTTGCCATCACC-TTTTGATAACATCACCAAGCTTATCAGCGAT 572
| || | |||| | ||||||| || |||| ||| || || | ||||||| | |
Sbjct 499 ATGAGGCCACATCAAACATGCCATCGCCATTTTC-TAATATAACTACTCTTATCACCCAA 557
Query 573 TTTCGCTC-AAAGGGCCTCAACGAGAAGGATCTAGTCATTCTCTCGGGTGGTCACACAAT 631
|| | || ||||| ||||||| |||| || || ||| | || || |||| ||||| |
Sbjct 558 TTCCAATCCAAAGG-CCTCAACAAGAAAGACCTCGTCGTGCTTTCAGGTGCACACACGGT 616
Query 632 TGGA-ATGGGACATTGTCCTTTATTGACAAACCGGCTTTACAACTTCACCGGAAAAGGAG 690
||| | | |||||||||| || | | |||| |||| ||||| ||||||||||||||||
Sbjct 617 TGGGGACGC-ACATTGTCCTATAGTCAGAAACAGGCTCTACAATTTCACCGGAAAAGGAG 675
Query 691 ACAGCGACCCAAGTTTGGACTCGGAGTACGCCGCTA-AGCTCAGGAAGAAA-TGCAAGCC 748
|||| || ||||| || ||| ||| || || || | | ||||| |||||| || |||||
Sbjct 676 ACAGTGATCCAAGCTTAGACAAGGAATATGCAGCCAGA-CTCAG-AAGAAAATGTAAGCC 733
Query 749 CACCGATACGACGACGGCTCTAGAGATGGATCCGGGGAGTTTCAAAACATTTGACTTGA- 807
|||||||| ||||| | ||| || |||||||| || || |||| ||||||||| | |
Sbjct 734 GACCGATACCACGACAGATCTGGAAATGGATCCAGGAAGCTTCACAACATTTGA-TAAAA 792
Query 808 GCTACTTCACGCTAGTGGCTAAGAGAA-GAGGACT-TTTCCAGTCGGATGCTGCTCTACT 865
||||||||| ||| ||| |||| | || |||| | |||| | || ||||| ||||| |
Sbjct 793 GCTACTTCAAGCTTGTGTCTAA-ACAAAGAGGGTTGTTTCAA-TCTGATGCAGCTCTTTT 850
Query 866 CGACAACTCCAAGA--CTAGGGCTTATGT-CT--TGCAA-CAGATAA-GAACTCATGGGT 918
|||| || |||| ||| |||| || || ||||| | || || | | |||| |
Sbjct 851 AAACAA-TC-AAGAAACTAAATCTTACGTTCTCATGCAAAC-GA-AACGT--T-ATGGTT 903
Query 919 CAA-TGTTCTTTAACGACTTTGGTGTCTCTATGGTGAAAATGGGTCGGACTGGAGTTCTT 977
| | | |||||||| |||||||||||||| |||||||| ||||||||| ||||||| ||
Sbjct 904 CTACT-TTCTTTAAGGACTTTGGTGTCTCCATGGTGAAGTTGGGTCGGATTGGAGTT-TT 961
Query 978 A-CGGGT 983
| |||||
Sbjct 962 AACGGGT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5