BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01200.1
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477409 jgi|Araly1|477409|fgenesh2_kg.3__110__AT3G01200.1 1986 0.0
> Ahg477409 jgi|Araly1|477409|fgenesh2_kg.3__110__AT3G01200.1
Length=1415
Score = 1986 bits (1075), Expect = 0.0
Identities = 1312/1423 (92%), Gaps = 30/1423 (2%)
Strand=Plus/Plus
Query 15 ATGAATTTACACGGCG--TC-TCGGGCCATCACGAGCCTAATTCCGAACCTCCAATTCCG 71
|||||| || |||||| || || ||||||| |||| ||| |||||||||||||||||||
Sbjct 1 ATGAATCTAGACGGCGTCTCATCAGGCCATCTCGAGGCTAGTTCCGAACCTCCAATTCCG 60
Query 72 ACAGGTTCGTCGAGTCCGAAGCTGAAGATTAGTCCCAAATTGAATCGGTGGTCTAGGGGC 131
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 61 ACAGGTTCGTCGAGTCCGAAGCTGAAGATTAGTCCCAAATTGAATCGCTGGTCTATGGGC 120
Query 132 CGAGCTTTAAGATCTGGTGTTAAGCTTGACCGTCCAATTCCCCGTTCCGATAACTCACCT 191
||| ||||||||||||||| |||||| ||||||||||||| |||||||||| || ||| |
Sbjct 121 CGAACTTTAAGATCTGGTGGTAAGCTCGACCGTCCAATTCACCGTTCCGATGACACACAT 180
Query 192 CGCCGTCAAGTAACGGAAGCCCAACCGACCGATGAGGCTGATAAGAAGACGACGGCGATC 251
|||||||||||||||||||| ||| ||| || ||||||| |||||||||| |||||||
Sbjct 181 CGCCGTCAAGTAACGGAAGCGAAACAGACGGAGGAGGCTGGTAAGAAGACGTCGGCGATT 240
Query 252 GACGTGGAGGTAACGGCGGGAAAGTCTATATATTTGGTTTCCGACGGAACTGGGTGGACG 311
||||| ||| ||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 241 GACGTTGAGATAACGGCAGGAAAGTCTATATATTTGGTTTCCGACGGGACAGGGTGGACG 300
Query 312 GCAGAGCATTCCGTTAACGCCGCTTTGGGACAATTCGAAGATTTTTCGTTGAATCGTGGC 371
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GCAGAGCACTCCGTTAACGCCGCTTTGGGACAATTCGAAGATTTCTCGTTGAATCGTGGG 360
Query 372 TCTTCTGTGAATACCCATCTCTTCTCCTGGGTTGAGGATGAGGAGAGGCTTATCGAGATT 431
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 361 TCTTCTGTAAATACCCATCTCTTCTCTTGGGTTGAGGATGAGGAGAGGCTTATAGAGATT 420
Query 432 ATTAAGCAAGCGGCAAAGGAAGGGGCAATGTGTTTCTACACTTTAGCAAATCCTTCTATG 491
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 ATCAAGCAGGCGGCAAAGGAAGGGGCAATGTGTTTCTACACTTTAGCTAATCCTTCTATG 480
Query 492 GCAAAATCCGCAAAGCAAGCTTGTGATCAGTTGGGTGTGCTTTCGGTTGATATTCTAGGA 551
|||||||||||||| |||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct 481 GCAAAATCCGCAAAACAAGCTTGCGATCAATGGGGTGTGCTTTCGGTCGATATTCTAGGA 540
Query 552 CCAATCATCGAAGGGATTGCGTCTCACTTAGGTGTTTCTCCGTCAGGTCTTACACGTGGA 611
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 541 CCAATCATCGAAGGGATTGCGTCTCACTTAGGTGTTTCTCCATCAGGTCTTACTCGTGGG 600
Query 612 GCACCTGGTAGGGTCAAGACTCTCAATGATGCATATTTCAAAAGGATTGAAGCCATTGAG 671
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 601 GCCCCTGGTAGGGTCAAGACTCTCAATGATGCCTATTTCAAAAGGATCGAAGCCATTGAG 660
Query 672 TTTACCATTAAGCAAGATGATGGGACTTTACCTGAGAACTTAAGCAAGGCTGATATAGTT 731
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 TTTACCATTAAGCAAGATGATGGGACTTTACCCGAGAACTTAAGCAAGGCTGATATAGTT 720
Query 732 CTTGTCGGGGTTTCCCGGACAGGGAAGACGCCCTTGTCCACTTACATTGCTCAAAAAGGG 791
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 721 CTAGTCGGGGTTTCCCGCACAGGGAAGACGCCATTGTCCACTTACATTGCTCAAAAAGGG 780
Query 792 TACAAAGTTGCTAATGTGCCGTTTGTGATGGGCGTGGAACCACCCAGGACGCTCTTTCAG 851
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 781 TACAAAGTTGCCAATGTACCGTTTGTCATGGGCGTGGAACCACCCAGGACGCTCTTTGAG 840
Query 852 GTTGAACCGAGAAAAGTTTTTGGTTTGAAGATCCAGCTCGTTGTACTGCAAGCGATTAGA 911
|||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 841 GTTGAACCGAGAAAGGTTTTCGGTTTGAAGATTCAGCTGGTTGTACTGCAAGCGATTAGG 900
Query 912 AGAACAAGGGTTAAAACGCTAGGCGTAGATACAGAGGCAGAGAACAATTACTCGGGGATT 971
|||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 AGAACAAGGGCTAAAACTTTAGGCGTAGATACGGAGGCAGAGAACAATTACTCGGGGATC 960
Query 972 GATCTTGTTCGGAAAGAACTAGATTTCGCGTCAAGGATCTATG-AGCGAAACCCCGGATG 1030
|||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 961 GATCTTGTTCGGAAAGAACTGGATTTCGCGTCAAGGATCTATGCGGC-AAACCCCGGATG 1019
Query 1031 GGCAGTGATAGATGTGACGAATAAGGCGATTGAAGAAACCGCGGCTGTGATTCTGCGGCT 1090
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGCAGTGATAGATGTGACTAATAAGGCGATTGAAGAAACCGCGGCTGTGATTCTGCGGCT 1079
Query 1091 GTACCATGACGGTAGAGACACTAGTACTACGGTACCGCGTATCTCAAAACGCTACTAAGC 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTACCATGACGGTAGAGACACTAGTACTACGGTACCGCGTATCTCAAAACGCTACTAAGC 1139
Query 1151 A--CAC--TCCTTTGACCGTAGAGAGGATGAAACACCAGTGTCGATAAAGTATCAAGTGA 1206
| ||| |||||||||||||||| | | |||||| |||| | |||||||||| ||||||
Sbjct 1140 AAGCACACTCCTTTGACCGTAGAG-G-AGGAAACAACAGTTTGGATAAAGTATTAAGTGA 1197
Query 1207 ATAAAGTAATAT-ATGTCTATAATAATAA------GTTGAATAACAAATCCAACCGAGGC 1259
|||||||||| | || ||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1198 ATAAAGTAAT-TGATCTCTATAATAATAATAATAAGTT-AATAACAAGTCCAACCGAGGC 1255
Query 1260 ATGATGAATCATATGTTTTAGTCAACGAATGTAAGAGGATGAAGGATAACGAAAACTAAT 1319
|||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1256 ATGA--A-TCATATGTTTTAGTCAACGAATGTAAGAGGATGAAGGATAACAAAAACTAAT 1312
Query 1320 AATTGTGG---CTACTCTGAATTCTTTTATTACTAGTCTATA-A-AA--CAAAAGAATAT 1372
|||||||| |||||||||||||||||| |||||||||||| | || ||||| ||||
Sbjct 1313 AATTGTGGTGGCTACTCTGAATTCTTTTAGTACTAGTCTATATATAAAACAAAATAATAA 1372
Query 1373 CTGTCATTAGCATTTAGTTGCAACGTTGCAATTTGGGTGTGTT 1415
|||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1373 CTGTCATTAGCATTTAGTTGAAACGTTGCAATTTGGGTGTGTT 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54735682065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5