BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01210.1 Length=1032 Score E Sequences producing significant alignments: (Bits) Value Ahg477407 jgi|Araly1|477407|fgenesh2_kg.3__108__AT3G01210.1 1349 0.0 > Ahg477407 jgi|Araly1|477407|fgenesh2_kg.3__108__AT3G01210.1 Length=886 Score = 1349 bits (730), Expect = 0.0 Identities = 840/892 (94%), Gaps = 12/892 (1%) Strand=Plus/Plus Query 82 ctctttctctctcacaatcacacgaatcttgtcttcttttc-tctccgtctctttcGATA 140 |||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| Sbjct 1 CTCTTTCTCTCTCACAATCACACGAATCTTGTGTTC-TTTCTTCTCCGTCTCTTTCGATA 59 Query 141 CTTGGCTTCAATCCTGTGAC-GTCCTGTTCTATTGTGCCTTAATCGGGTATCTAGGTTCG 199 ||| ||||||||| | |||| |||||||||||| | |||||||||||||| |||||| | Sbjct 60 CTTTGCTTCAATCTTCTGACTTTCCTGTTCTATTATACCTTAATCGGGTATTTAGGTTTG 119 Query 200 TGTGAGAAAACAGAACAATATAATGTATCCTTGTGGTTACGTTGCTCAAGTCACCAACTT 259 |||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 120 TGTGAGAAAACAGAAC-----AATGTATCCTTGTGGTTATGTTGCTCAAGTCACCAACTT 174 Query 260 GTCTCCTCAAGCCACTGAGAAAGATGTTCATAGGTTCTTCTCTCACTGTGGTATCGTCGA 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 GTCTCCTCAAGCCACTGAGAAAGATGTTCATAGGTTCTTCTCTCACTGTGGTATCGTCGA 234 Query 320 GCTCGTTGAAATCACCGGGTGCCAAGGGGATGCATTAACGGCTTATGTAACCTTCAGAGA 379 |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 235 GCTCGTTGAAATCACCGGGTGCGAAGGGGATGCTTTAACGGCTTATGTAACCTTCAGAGA 294 Query 380 TGCGTATGCTCTGGATATGGCTGTGTTACTTAGCGGAGCTACGATCGTTGATCAAACCGT 439 |||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||||| Sbjct 295 TGCGTATGCTCTAGATATGGCCGTGTTGCTTAGCGGAGCTACCATCGTTGATCAAACCGT 354 Query 440 TTGGATATCGGTCTACGGTGTCTATTTACATGAATCTAACAATCTCAGACAAGAAGAAGA 499 |||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 355 TTGGATATCGGTGTACGGTGTCTATTTACACGAATCTAACAGTCTCAGACAAGAAGAAGA 414 Query 500 CTATAGTGTTACGGTGACTCGTTCAGACGCGTTTGCTTCATCGCCTGGAGAGGCCA-TAA 558 |||||||| |||| |||||||||||||||||| |||||||| |||||||| || | ||| Sbjct 415 TTATAGTGTAACGGCGACTCGTTCAGACGCGTTCGCTTCATCCCCTGGAGAAGC-AGTAA 473 Query 559 CCGTGGCTCAACAAGTTGTGCAGACGATGTTAGCTAAAGGCTACGTTTTAAGCAAAGACG 618 ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 474 CCGTGGCTCAACAAGTTGTAAAGACGATGTTAGCTAAAGGCTATGTTTTAAGCAAAGACG 533 Query 619 CGATTGGTAAAGCCAAAGCTTTGGATGAGTCTCAGAGATTTTCAAGCTTGGTAGCGACCA 678 | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 534 CAATCGGTAAAGCCAAAGCTTTGGATGAGTCTCAGAGATTCTCAAGCTTGGTAGCGACCA 593 Query 679 AATTGGCAGAGATCAGCCATTACCTTGGCCTCACACAGAACATTCAGTCGAGTATGGAAC 738 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 AATTGGCAGAGATCAGCCATTACCTTGGCCTCACACAGAACATTCAGTCGAGTATGGAAG 653 Query 739 TCGTGAGATCAGCGGACGAGAAGTATCATTTCTCGGATTTCACTAAATCCGCGGTTCTTG 798 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 654 TCGTGAGATCAGCGGACGAGAAGTATCATTTCTCGGATTTCACAAAATCCGCGGTTCTTG 713 Query 799 TCACGGGCACAGCTGCTGTAGCCGCAGCCACCATTACAGGGAAAGTGGCTGCAGCTGCAG 858 ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 714 TCACGGGAACGGCTGCTGTGGCCGCAGCCACCATTACAGGGAAAGTGGCTGCAGCTGCAG 773 Query 859 CGACTAGTGTGGTCAACAGTCGTTACTTTGCTAATGGGGCTTTATGGTTCTCAGATGCTT 918 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 774 CTACTAGTGTGGTCAACAGTCGATACTTTGCTAATGGGGCTTTATGGTTCTCAGATGCTT 833 Query 919 TGGGCCGGGCTGCAAAAGCAGCGGCCCATATCGG-TGGAGGAGGAAGCAATT 969 ||||||||||||| ||||||||||||||||| || ||||||||||||| ||| Sbjct 834 TGGGCCGGGCTGCTAAAGCAGCGGCCCATAT-GGCTGGAGGAGGAAGCGATT 884 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38389777419 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5