BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01210.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477407 jgi|Araly1|477407|fgenesh2_kg.3__108__AT3G01210.1 1349 0.0
> Ahg477407 jgi|Araly1|477407|fgenesh2_kg.3__108__AT3G01210.1
Length=886
Score = 1349 bits (730), Expect = 0.0
Identities = 840/892 (94%), Gaps = 12/892 (1%)
Strand=Plus/Plus
Query 82 ctctttctctctcacaatcacacgaatcttgtcttcttttc-tctccgtctctttcGATA 140
|||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 1 CTCTTTCTCTCTCACAATCACACGAATCTTGTGTTC-TTTCTTCTCCGTCTCTTTCGATA 59
Query 141 CTTGGCTTCAATCCTGTGAC-GTCCTGTTCTATTGTGCCTTAATCGGGTATCTAGGTTCG 199
||| ||||||||| | |||| |||||||||||| | |||||||||||||| |||||| |
Sbjct 60 CTTTGCTTCAATCTTCTGACTTTCCTGTTCTATTATACCTTAATCGGGTATTTAGGTTTG 119
Query 200 TGTGAGAAAACAGAACAATATAATGTATCCTTGTGGTTACGTTGCTCAAGTCACCAACTT 259
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 120 TGTGAGAAAACAGAAC-----AATGTATCCTTGTGGTTATGTTGCTCAAGTCACCAACTT 174
Query 260 GTCTCCTCAAGCCACTGAGAAAGATGTTCATAGGTTCTTCTCTCACTGTGGTATCGTCGA 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GTCTCCTCAAGCCACTGAGAAAGATGTTCATAGGTTCTTCTCTCACTGTGGTATCGTCGA 234
Query 320 GCTCGTTGAAATCACCGGGTGCCAAGGGGATGCATTAACGGCTTATGTAACCTTCAGAGA 379
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 235 GCTCGTTGAAATCACCGGGTGCGAAGGGGATGCTTTAACGGCTTATGTAACCTTCAGAGA 294
Query 380 TGCGTATGCTCTGGATATGGCTGTGTTACTTAGCGGAGCTACGATCGTTGATCAAACCGT 439
|||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 295 TGCGTATGCTCTAGATATGGCCGTGTTGCTTAGCGGAGCTACCATCGTTGATCAAACCGT 354
Query 440 TTGGATATCGGTCTACGGTGTCTATTTACATGAATCTAACAATCTCAGACAAGAAGAAGA 499
|||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 355 TTGGATATCGGTGTACGGTGTCTATTTACACGAATCTAACAGTCTCAGACAAGAAGAAGA 414
Query 500 CTATAGTGTTACGGTGACTCGTTCAGACGCGTTTGCTTCATCGCCTGGAGAGGCCA-TAA 558
|||||||| |||| |||||||||||||||||| |||||||| |||||||| || | |||
Sbjct 415 TTATAGTGTAACGGCGACTCGTTCAGACGCGTTCGCTTCATCCCCTGGAGAAGC-AGTAA 473
Query 559 CCGTGGCTCAACAAGTTGTGCAGACGATGTTAGCTAAAGGCTACGTTTTAAGCAAAGACG 618
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 474 CCGTGGCTCAACAAGTTGTAAAGACGATGTTAGCTAAAGGCTATGTTTTAAGCAAAGACG 533
Query 619 CGATTGGTAAAGCCAAAGCTTTGGATGAGTCTCAGAGATTTTCAAGCTTGGTAGCGACCA 678
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 CAATCGGTAAAGCCAAAGCTTTGGATGAGTCTCAGAGATTCTCAAGCTTGGTAGCGACCA 593
Query 679 AATTGGCAGAGATCAGCCATTACCTTGGCCTCACACAGAACATTCAGTCGAGTATGGAAC 738
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AATTGGCAGAGATCAGCCATTACCTTGGCCTCACACAGAACATTCAGTCGAGTATGGAAG 653
Query 739 TCGTGAGATCAGCGGACGAGAAGTATCATTTCTCGGATTTCACTAAATCCGCGGTTCTTG 798
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 654 TCGTGAGATCAGCGGACGAGAAGTATCATTTCTCGGATTTCACAAAATCCGCGGTTCTTG 713
Query 799 TCACGGGCACAGCTGCTGTAGCCGCAGCCACCATTACAGGGAAAGTGGCTGCAGCTGCAG 858
||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TCACGGGAACGGCTGCTGTGGCCGCAGCCACCATTACAGGGAAAGTGGCTGCAGCTGCAG 773
Query 859 CGACTAGTGTGGTCAACAGTCGTTACTTTGCTAATGGGGCTTTATGGTTCTCAGATGCTT 918
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 774 CTACTAGTGTGGTCAACAGTCGATACTTTGCTAATGGGGCTTTATGGTTCTCAGATGCTT 833
Query 919 TGGGCCGGGCTGCAAAAGCAGCGGCCCATATCGG-TGGAGGAGGAAGCAATT 969
||||||||||||| ||||||||||||||||| || ||||||||||||| |||
Sbjct 834 TGGGCCGGGCTGCTAAAGCAGCGGCCCATAT-GGCTGGAGGAGGAAGCGATT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5