BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01220.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927652 jgi|Araly1|927652|scaffold_300109.1 1461 0.0
Ahg476108 jgi|Araly1|476108|fgenesh2_kg.2__1238__AT1G69780.1 187 2e-46
Ahg325972 jgi|Araly1|325972|fgenesh1_pm.C_scaffold_6001192 78.7 9e-14
> Ahg927652 jgi|Araly1|927652|scaffold_300109.1
Length=893
Score = 1461 bits (791), Expect = 0.0
Identities = 865/898 (96%), Gaps = 15/898 (2%)
Strand=Plus/Plus
Query 103 TTGGTGGAATACATACATGTATGTGTTTGATCCAACAACAGAAGCTGGATTGAGATTAGA 162
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 TTGCTGGAATACATACATGTATGTGTTTGATCCAACAACAGAAGCTGGATTGAGATTAGA 65
Query 163 GATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAAGACAACAGTCAAGA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAAGACAACAGTCAAGA 125
Query 223 TCAGCTCCCTTCTTGTCCTCCTCATCTCTTCAATGGAGGAGGAAACTACATGATGAACAG 282
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 TCAACTACCTTCTTGTCCTCCTCATCTCTTCAATGGAGGAGGAAACTACATGATGAACAG 185
Query 283 ATCTATGTCTTTAATGAACGTGCAAGAAGATCATAATCAAACCTTGGATGAGGAGAATCT 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 ATCTATGTCTTTAATGAACGTGCAAGAAGATCATAATCAAACCTTGGATGAGGAGAATCT 245
Query 343 ATCAGACGATGGGGCACATACTATGCT-GGGAGAGAAGAAGAAGAGGCTGCAATTAGAGC 401
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 246 ATCAGACGATGGGGCACATACTATGCTTGGG-GAGAAGAAGAAGAGGCTGCAATTAGAGC 304
Query 402 AAGTTAAGGCATTAGAGAAGAGCTTTGAGCTTGGTAACAAGCTGGAGCCAGAGAGGAAGA 461
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 305 AAGTTAAGGCATTAGAGAAGAGCTTCGAGCTTGGGAACAAGCTGGAGCCAGAGAGGAAGA 364
Query 462 TACAACTAGCTAAAGCATTAGGGATGCAACCAAGACAGATCGCGATTTGGTTTCAAAACA 521
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 365 TACAACTAGCTAAAGCATTAGGGATGCAACCGAGACAGATTGCGATTTGGTTTCAAAACA 424
Query 522 GGAGAGCTAGGTGGAAGACTAGACAGCTCGAGAGAGATTATGATTCACTCAAGAAACAGT 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GGAGAGCTAGGTGGAAGACTAGACAGCTCGAGAGAGATTATGATTCACTCAAGAAACAGT 484
Query 582 TTGAGTCTCTTAAATCCGACAATGCTTCTCTACTTGCCTATAACAAGAAACTCCTTGCTG 641
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 485 TTGAGTCTCTTAAATCCGACAATGATTCTCTACTTGCCTACAACAAGAAACTCCTTGCTG 544
Query 642 AGGTAATGGCTTTAAAGAACAAAGAATGTAATGAAGGAAACAT-AGTAAAGAGAGAAGCA 700
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 545 AGGTAATGGCTTTAAAGAACAAAGAATGTAATGAAGGAAACATTA-TAAAGAGAGAAGCA 603
Query 701 GAAGCTTCATGGAGCAACAACGGAAGCACAGAGAATAGTTCAGACATCAATCTGGAGATG 760
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 604 GAAGCTTCATGGAGCAACAATGGAAGCACAGAGAATAGTTCAGACATCAATCTAGAGATG 663
Query 761 CCTAGAGAGACCATTACAACACATGTGAACACGATCAAAGACCTATTCCCTTCATCGATT 820
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 664 CCTAGAGAGACCACTACAACACATGTGAACACGATCAAAGACCTTTTCCCTTCATCGATT 723
Query 821 CGATCATCTGCACATGATGATGATCATCATCAGAATCATGAAATAGTTCAAGAAGAAAGC 880
||||||||||||||||||||| | | |||| |||||||||||||||||||||||||
Sbjct 724 CGATCATCTGCACATGATGATCAG-A--ATCA---TCATGAAATAGTTCAAGAAGAAAGC 777
Query 881 CTTTGTAACATGTTTAATGGCATTGATGAAACGACGC-CGGCTGGTTACTGGGCATGGTC 939
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 778 CTTTGTAACATGTTTAATGGCATTGATGAAACGAC-CTCGGCTGGTTACTGGGCATGGTC 836
Query 940 TGacccaaaccacaaccaccaccaccaccaGTTCAACTGATTCATGATTCTAAAGCTC 997
||||||||||||||||||||||||||| ||||||||||||| |||| || ||||||
Sbjct 837 TGACCCAAACCACAACCACCACCACCA---GTTCAACTGATTCGTGATCCTGAAGCTC 891
> Ahg476108 jgi|Araly1|476108|fgenesh2_kg.2__1238__AT1G69780.1
Length=1323
Score = 187 bits (101), Expect = 2e-46
Identities = 243/309 (79%), Gaps = 20/309 (6%)
Strand=Plus/Plus
Query 369 TGGGAGAGAAGAAGAAGAGGCTGCAA-TTAGAGCAAGTTAAGGCATTAGAGAAGAGCTTT 427
||||||||||||||| ||| || || | || ||||| ||| |||||||||||| ||||
Sbjct 473 TGGGAGAGAAGAAGAGGAGATTG-AACATGGAACAAGTGAAGACATTAGAGAAGAACTTT 531
Query 428 GAGCTTGGTAACAAGCTGGAGCCAGAGAGGAAGATACAACTAGCTAAAGCATTAGGGATG 487
|||||||| ||||| || || ||||||||||| || || |||||| || ||||| ||
Sbjct 532 GAGCTTGGAAACAAACTTGAACCAGAGAGGAAAATGCAGCTAGCTCGTGCCTTAGGTTTG 591
Query 488 CAACCAAGACAGATCGCGATTTGGTTTCAAAA-CAGGAGAGCTAGGTGGAAGACTA-GAC 545
|||||||||||||||||||||||||| ||||| | | |||||| | ||||| || | | |
Sbjct 592 CAACCAAGACAGATCGCGATTTGGTTCCAAAATC-GAAGAGCTCGTTGGAAAACAAAG-C 649
Query 546 AGCTCGAGAGAGATTATGATTCACTCAAGAA-ACAGTTTGAGT-CTCTTAAATCCGACAA 603
|||| |||| |||||||||| | || || | ||||||||| | | |||||| | || ||
Sbjct 650 AGCTTGAGAAAGATTATGATACTCTTAA-ACGACAGTTTGA-TACACTTAAAGCTGAAAA 707
Query 604 TG--CTTCT-CTA-CTTGCCTATAA-CAAGAAACTCCTTGCTGAGGTAATGGCTTTAAAG 658
|| ||||| | | || | |||| || |||||||| |||||| |||||| |||||
Sbjct 708 TGATCTTCTTCAAACT--C--ATAATCA-GAAACTCCAAGCTGAGATAATGGGATTAAAA 762
Query 659 AACAAAGAA 667
|||| ||||
Sbjct 763 AACAGAGAA 771
> Ahg325972 jgi|Araly1|325972|fgenesh1_pm.C_scaffold_6001192
Length=951
Score = 78.7 bits (42), Expect = 9e-14
Identities = 128/165 (78%), Gaps = 23/165 (14%)
Strand=Plus/Plus
Query 149 GGATTGAGATTAGAGATGGCGTTTCCTCAACATGGTTTTATGTTCCAACAACTTCATGAA 208
||||||||||| |||||||| ||||| |||||||| || ||||| || ||||| ||||||
Sbjct 49 GGATTGAGATTGGAGATGGCCTTTCCACAACATGGCTTCATGTTTCAGCAACTCCATGAA 108
Query 209 GACAACAG-TCA--A--GA---T---C-A----GCTCCCTTCTTGTCCTCCTCATCTCTT 252
||||| | ||| | | | | | |||||||||||||||||||| |||||
Sbjct 109 GACAA-TGCTCATCACTTACCTTCCCCTACCTCTCTCCCTTCTTGTCCTCCTCACCTCTT 167
Query 253 C-A---A--TGGAGGAGGAAACTACATGATGAACAGATCTATGTC 291
| | | ||||||||||||||||||||||||||||| |||||
Sbjct 168 CTATGGAGGAGGAGGAGGAAACTACATGATGAACAGATCAATGTC 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5