BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01230.1 Length=757 Score E Sequences producing significant alignments: (Bits) Value Ahg927651 jgi|Araly1|927651|scaffold_300108.1 630 4e-180 > Ahg927651 jgi|Araly1|927651|scaffold_300108.1 Length=421 Score = 630 bits (341), Expect = 4e-180 Identities = 384/405 (95%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 75 GGGAAAATTAATCTTTAATCATGGCAAAGATCTCCTTTGCGCTTGTCGTTGTCGCTCTTA 134 ||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |||| Sbjct 1 GGGAAAATTAATCTTTAATCATGGCAAAGATCTCCTTTGTGCTTCTCGTTGTCACACTTA 60 Query 135 TTGTCTTTCAACAAGTATCTGAGGCTCATCGTCCGATAGATTTCAACGAAGAAGTACTTG 194 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGTCTTTCAACAAGTCTGTGAGGCTCATCGTCCGATAGATTTCAACGAAGAAGTACTTG 120 Query 195 AAAAGGACTTGCATGAAGCCAAGGACTTGATAGAAGAAGACTTGAGAGAGAAAGAAACGA 254 |||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||| Sbjct 121 AAAAGGACTTACATGAAGCCAAAGACTTGATAGAAGAAGACTTGAAAGAAAAAGAAACGA 180 Query 255 GCATCAGGAACTTGGAAAGCGAGGTTAGTTTGTTAACCAAATCTGAGATGATGCTTACTC 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCATCAGGAACTTGGAAAGCGAGGTTAGTTTGTTAACCAAATCTGAGATGATGCTTACTC 240 Query 315 AGCTCGAACTTGCTTACAAAAATGGTA-GAAATCTTGAGCATTTCGGGAAAAAACTCAAG 373 ||||||||| ||||||||||||||| | || |||||||| ||||||||||| ||||||| Sbjct 241 AGCTCGAACATGCTTACAAAAATGGGAAGAG-TCTTGAGCGTTTCGGGAAAAGACTCAAG 299 Query 374 AAATTCAACAGGAGGATCAAGCGGGCTCCTGAGGAAGTGAGATACGTTTCCATCATCCAG 433 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 300 AAATTCAACAGGAGGATCAAGCGGGCTCCTGAGGAAGTGAGGTACGTTTCCATTATCCAA 359 Query 434 TCCATTTTGAAGGATTTGGGATTAAACGGAGGGAGACATTAAAAA 478 |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 360 TCCATTTTGAAGGATTTGGGATTAAACGGAGGGAGAAATTAAAAA 404 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27905975244 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5