BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01230.1

Length=757
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927651 jgi|Araly1|927651|scaffold_300108.1                        630    4e-180


> Ahg927651 jgi|Araly1|927651|scaffold_300108.1
Length=421

 Score =  630 bits (341),  Expect = 4e-180
 Identities = 384/405 (95%), Gaps = 2/405 (0%)
 Strand=Plus/Plus

Query  75   GGGAAAATTAATCTTTAATCATGGCAAAGATCTCCTTTGCGCTTGTCGTTGTCGCTCTTA  134
            ||||||||||||||||||||||||||||||||||||||| |||| |||||||| | ||||
Sbjct  1    GGGAAAATTAATCTTTAATCATGGCAAAGATCTCCTTTGTGCTTCTCGTTGTCACACTTA  60

Query  135  TTGTCTTTCAACAAGTATCTGAGGCTCATCGTCCGATAGATTTCAACGAAGAAGTACTTG  194
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTGTCTTTCAACAAGTCTGTGAGGCTCATCGTCCGATAGATTTCAACGAAGAAGTACTTG  120

Query  195  AAAAGGACTTGCATGAAGCCAAGGACTTGATAGAAGAAGACTTGAGAGAGAAAGAAACGA  254
            |||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||||
Sbjct  121  AAAAGGACTTACATGAAGCCAAAGACTTGATAGAAGAAGACTTGAAAGAAAAAGAAACGA  180

Query  255  GCATCAGGAACTTGGAAAGCGAGGTTAGTTTGTTAACCAAATCTGAGATGATGCTTACTC  314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GCATCAGGAACTTGGAAAGCGAGGTTAGTTTGTTAACCAAATCTGAGATGATGCTTACTC  240

Query  315  AGCTCGAACTTGCTTACAAAAATGGTA-GAAATCTTGAGCATTTCGGGAAAAAACTCAAG  373
            ||||||||| ||||||||||||||| | ||  |||||||| ||||||||||| |||||||
Sbjct  241  AGCTCGAACATGCTTACAAAAATGGGAAGAG-TCTTGAGCGTTTCGGGAAAAGACTCAAG  299

Query  374  AAATTCAACAGGAGGATCAAGCGGGCTCCTGAGGAAGTGAGATACGTTTCCATCATCCAG  433
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| 
Sbjct  300  AAATTCAACAGGAGGATCAAGCGGGCTCCTGAGGAAGTGAGGTACGTTTCCATTATCCAA  359

Query  434  TCCATTTTGAAGGATTTGGGATTAAACGGAGGGAGACATTAAAAA  478
            |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  360  TCCATTTTGAAGGATTTGGGATTAAACGGAGGGAGAAATTAAAAA  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27905975244


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5