BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01240.1

Length=662
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477404 jgi|Araly1|477404|fgenesh2_kg.3__105__AT3G01240.1          793    0.0  


> Ahg477404 jgi|Araly1|477404|fgenesh2_kg.3__105__AT3G01240.1
Length=516

 Score =  793 bits (429),  Expect = 0.0
 Identities = 490/519 (94%), Gaps = 5/519 (1%)
 Strand=Plus/Plus

Query  15   ATCTCTTCTCACCTCTTTTCCTTTAACAAACTATTTGAATCTAAATTCAAATTGATTTGT  74
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1    ATCTCTTCTCACCTCTTTTCCTTTGACAAACTATTTGAATCTAAATTCAAATTGATTTGT  60

Query  75   TAAGGGAAACCTGAGCTAGAAAAACCATGGCAAAGATCTCCTTCGTACTTTTCGTTGTGG  134
            |||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct  61   TAAGGGAAAATTGAGCTAGAAAAATCATGGCAAAGATCTCCTTCGTGCTTTTCGTTGTGG  120

Query  135  CCCTTATCGCCTTTCTCCACGCTTATGAAGCTCGCAAAGTAGTAAATCTCGGTGAAGCAT  194
            ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct  121  CCCTTATCGCCTTTCTCCATGCTTATGAAGCTCGCAAAGTGGTAAATGTCGGTGAAGCAT  180

Query  195  TTGAAAAAGACTTACATAAAGCCGAGGCCATGATCGCGGAAGAATTAAAGGCTAAGAAAA  254
            ||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct  181  TTGAAAAAGACTTGCAGAAAGCCGAGGCCATGATCGCGGAAGAAGTAAAGGCCAAGAAAA  240

Query  255  CGAACATTCAAGGTTTGAAATCTGAGGTGAAAACGTTGAGCAAATCAGAAGTGATGTTGA  314
            |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct  241  CGAACATTCAAGGTTTGACATCAGAGGTGAAAACGTTGAGCAAATCTGAAGTGATGTTGA  300

Query  315  AGGAACTTGGAAATGCTTACAAGAAGGATATGGACTTAAGGCCTTACGAAAAGAAACTCA  374
            |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  301  AGGACCTTGGAAATGCTTACAAGAAAGATATGGACTTAAGGCCTTACGAAAAGAAACTCA  360

Query  375  AAAACTTCAGCAGGATCGTAGCCCTCAAGAAAGCACCTATGAAAAACAACAACAAGAAAC  434
            |||||||||||||| | ||||||||||||||||||||| ||  ||| ||||||||||| |
Sbjct  361  AAAACTTCAGCAGGGTTGTAGCCCTCAAGAAAGCACCTGTG--AAA-AACAACAAGAAGC  417

Query  435  CTGTATCCATAATCCAATCGATTTTGAAGGACTTCGGATTAAACGGAGGGAGGAACTGAC  494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  418  CTGTATCCATAATCCAATCGATTTTGAAGGACTTCGGATTAAACGGAGGGAGGGACTGAC  477

Query  495  AAAAAA--CTATTAATAATTAGGGTGTGATTAATGTTTT  531
            ||||||  ||||||||| ||||||| |||||||||||||
Sbjct  478  AAAAAAAACTATTAATATTTAGGGTATGATTAATGTTTT  516



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24284298129


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5