BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01250.1

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477403 jgi|Araly1|477403|fgenesh2_kg.3__104__AT3G01250.1          832    0.0  


> Ahg477403 jgi|Araly1|477403|fgenesh2_kg.3__104__AT3G01250.1
Length=653

 Score =  832 bits (450),  Expect = 0.0
 Identities = 498/522 (95%), Gaps = 0/522 (0%)
 Strand=Plus/Plus

Query  99   AATGGCAAAGAATTCTTATGCACTGTCTGGGTTAATTGTGGCCCTAGTCATCGCATTGGT  158
            ||||||||||||||||||||||||||||||  ||||||||||| ||||||||||| ||||
Sbjct  1    AATGGCAAAGAATTCTTATGCACTGTCTGGCCTAATTGTGGCCTTAGTCATCGCACTGGT  60

Query  159  ATGCAACATTGATGACGCTGCAGCGAGAGACGTGAAGCTAGTGAAGCTCCGCGATGTAAA  218
            |||||||||  |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  61   ATGCAACATCCATGATGCTGCAGCAAGAGACGTGAAGCTAGTGAAGCTCCGCGATGTAAA  120

Query  219  ACCCGAAACTTTGAACAAGTTGAAAGGAGAAAAAGAAAGTGAACTCATGCAAGCAGAGGA  278
            ||||||||||||||| |||||||| ||||| |||||||||||| ||||| ||| ||||||
Sbjct  121  ACCCGAAACTTTGAAGAAGTTGAACGGAGAGAAAGAAAGTGAAATCATGAAAGGAGAGGA  180

Query  279  GAAAAACAATCTTCTAAAGGAAATTGAGAAGGCAAAGAAATTGCTCGGAGAATTGAAAAC  338
            ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct  181  GAAAAACAATCTTCTAAAGGAAATTGAGAAGGCTAAGAAAATGCTCGGAGAATTGAAAAC  240

Query  339  GTTAAAGAAGCAATCAACTGGTGATATGAAAAGCGAATTGAAATCTTTGGTGAAATCTGA  398
            ||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct  241  GTTGAAGAAGCAATCAACTGGTGATATGAAAAGCGAATTGAGTTCTTTGGTGAAATCTGA  300

Query  399  ATCGTTACTTAATGAAATTTCAGATTCTCTGAAGAATGGAACGTACAACCATATTAAAGC  458
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  301  ATCGTTACTTAATGAAATTTCAGATTCTCTCAAGAATGGAACGTACAACCATATTAAAGC  360

Query  459  AAACATTTTTGTTGAAAAAGAATCATTTTTCTACAGAGCATGGAAGGAGAATGCCTATAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AAACATTTTTGTTGAAAAAGAATCATTTTTCTACAGAGCATGGAAGGAGAATGCCTATAA  420

Query  519  TTCGGTGGTTCCGGAGAAGGAGAAAGAGTATATGTCTACCATAAAACGCATTGTCAAGTT  578
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TTCGGTGGTTCCGGAGAAAGAGAAAGAGTATATGTCTACCATAAAACGCATTGTCAAGTT  480

Query  579  GGTGAAGAAAACTTAGAAGAAGAATCGGTTACTTCATGATAT  620
            | ||||||||||||||||||||||||||| | ||||||||||
Sbjct  481  GTTGAAGAAAACTTAGAAGAAGAATCGGTAAATTCATGATAT  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29583383592


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5