BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01260.1
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927648 jgi|Araly1|927648|scaffold_300105.1 926 0.0
> Ahg927648 jgi|Araly1|927648|scaffold_300105.1
Length=1088
Score = 926 bits (501), Expect = 0.0
Identities = 609/659 (92%), Gaps = 15/659 (2%)
Strand=Plus/Plus
Query 346 AAGAAGACGTTGAGGGTACACGAGCTAAAGAAGGGGAATCTAACGGTCAAATTTACAAAC 405
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 166 AAGAAGACGTTGGGGGTACACGAGCTAAAGAAGGGGAATCTAACGGCCAAATTTACAAAC 225
Query 406 CGGGGTGCTTCTATCATGTCTCTCCTTTTCCCCAATATAAATGGAAAATTAGAGGACATT 465
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 226 CGGGGTGCTTCTATCATGTCTCTCCTTTTCCCCAATAAAAATGGAAAAATAGAGGACTTT 285
Query 466 GTTCTGGGATATGACAGCGTCAATGACCACATGATTGACACGGTATTTTGTGGAGTGACG 525
||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||
Sbjct 286 GTTCTTGGATATGACAGCGTCAATGACTACATGAATGATACGGTATTTTGTGGAGTGACG 345
Query 526 TTGGCACGTGTAGCCAGTAAAAAGGAAAAGGCCGCTGCAAACGATGGCAAAAACACGATC 585
|||||||||||||||| ||||| ||||||| ||| ||||||||||||| | | |
Sbjct 346 TTGGCACGTGTAGCCAATAAAAGGGAAAAGACCGTTGCAAACGATGGC----A-A--A-- 396
Query 586 CATGGTGGGACGAAAGAGTCTAGCGATGTGATTTGGAGAGTTAAGAAACACAAACATAAT 645
||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||
Sbjct 397 CATGGTGTGACGAAAGAGTCTGGCGATGTCATTTGGACAGTTAAGAAACACAACCATAAT 456
Query 646 GGCAAAAAACCTTATATTGTTTTCACATACACAACAAGTCCTGATGGCG---ATCAAGGG 702
||||||||||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct 457 GGCAAAAAACCTTATATTGTTTTCAGAT--AC-ACAAGTCCTGATGGCGATCATCAAGGG 513
Query 703 AAACTTGAAGTCACTGTGACATATAAGCTGGTAGGAGAAAACAGATTGAAAATGGTGATG 762
|||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||
Sbjct 514 AAACTTGAAGTCACTGTGACGTATAAGCTGGTAGGAGATAACAAATTGGAAATGGTGATG 573
Query 763 CAAGCAAAGGCTAAAGAGAAAACTACTCCGTTGAATTTGGTTCATCGTTCTTATTGGAAT 822
|||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 574 GAAGCAAAGGCTAAAGAGAAAGCAACTCCGGTGAATTTGGTTCATCGTTCTTATTGGAAT 633
Query 823 CTTGGTGGTCATAACAATGAAGATATCTTCTCTGAAGAAATTCAAATTCTCGGTTCCGGT 882
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 634 CTTGGTGGTCATAACAATGAAGATATCTTGTCTCAAGAAATTCAAATTCTCGGTTCCGGT 693
Query 883 TATACTCATCTCGACGATAATCTCACTCCAACCGGGAAAATCCTCGCCGTTAAAGGAACA 942
||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 694 TATGCTCACCTCGACGATAATCTCACTCCAACCGGAAAAATTCTCGCCGTTAAAGGAACA 753
Query 943 CCCTTCGATTTTCGCCAACTCCGACCTATTAAAGACAACATCAATGAGCTTAAGACAGG 1001
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 CCGTACGATTTTCGCCAACTCCGACCTATTAAAGACAACATCAATGAGCTTAAGACAGG 812
Score = 309 bits (167), Expect = 3e-83
Identities = 244/279 (87%), Gaps = 14/279 (5%)
Strand=Plus/Plus
Query 1046 GAAAAGTCGTGGAGCTTGTGGACAATAAATCGAAGATAAAAATGGAGTTATCTACAGACC 1105
||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct 812 GAAAAGTCGTGGAGCTTGTGGACAAGAAATCGAAGATAAAAATGGAGCTGTCTACAGACC 871
Query 1106 AATCCGGTCTAAGGTTGAAAACC------A--CT---AAACCA-AAAAATGGATCGGTTC 1153
|||| ||||||| || | ||| | | ||| | |||||||||||||||
Sbjct 872 AATCTGGTCTAAAATTCTATACCGGGGGAAGGTTGAAAAAAAATAAAAATGGATCGGTTT 931
Query 1154 ATAAAGCTTACTCTGGTTTATGTCTAGAATCACATGCAATCAATTACCAATATCGTTCTT 1213
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 932 ATAAAGCTTACTCCGGTTTATGTCTAGAATCACATGCAATCAATTACCAATGTCGTCCTT 991
Query 1214 CGCAGATAATTGAACCGGGGGAAACTTATAAGCATACTATGCTCTTTAAGTTTTCTTTTG 1273
|||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 992 CGCAGATAGTTGAACCGGGGAAAAATTATAAGCATACTATGCTCTTTAAGTTTTCTATTG 1051
Query 1274 TTCCGTAAACTTTGTAACGTTACTTTTTCTGGAAAGTTT 1312
|||||| ||||||||||||||||||| |||||||||||
Sbjct 1052 TTCCGTGAACTTTGTAACGTTACTTT--CTGGAAAGTTT 1088
Score = 244 bits (132), Expect = 1e-63
Identities = 143/148 (97%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 1 ATGGTTAGGATTTC-AGTTTTAGTGTGTTTGGTTCTTTTGGTTACAATAGGAGTCATGGT 59
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 22 ATGGTTAGGATTTCAAG-TTTAGTGTGTTCGGTTCTTTTGGTTACAATAGGAGTCATGGT 80
Query 60 TAGTGTCTCACTCGCTGACAACAACGAAGAGAAATCGACTGATCTGAAGAAATTCAAAGG 119
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 81 TAGTGTCTCACTCGCTGACAACAACGAAGAGAAATCGACTGATCTGAAGAAAGTCAAAGG 140
Query 120 AGGAGTAACTGATCACTCGATTAGTAAG 147
|||||||||||||| |||||||||||||
Sbjct 141 AGGAGTAACTGATCGCTCGATTAGTAAG 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50474742108
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5