BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01270.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477401 jgi|Araly1|477401|fgenesh2_kg.3__102__AT3G01270.1 2844 0.0
Ahg488352 jgi|Araly1|488352|fgenesh2_kg.6__1486__AT5G15110.1 848 0.0
> Ahg477401 jgi|Araly1|477401|fgenesh2_kg.3__102__AT3G01270.1
Length=1822
Score = 2844 bits (1540), Expect = 0.0
Identities = 1740/1832 (95%), Gaps = 31/1832 (2%)
Strand=Plus/Plus
Query 1 TTCGCAATACGATTCATCTACCAAAAAAGGC-TTTAGGTCAAACAGAAATAACGACCTAA 59
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 TTCGCAATACGATTCATCTACCAAAAAAGGCTTTTAGGTCAAACAGAAATAACGACCTAA 60
Query 60 AGCTATGTTTAAAGCTTAGCAGTTCTCCACATATATTTCAATATATAAAAAGATTACCCC 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AGCCATGTTTAAAGCTTAGCAGTTCTCCACATATATTTCAATATATAAAAAGATTTCCCC 120
Query 120 TT-----TTTAAAAAATAAAATAGA-T-AT-T----TGTTTTCCGTAAAAGAAAGGGGTA 167
|| |||||| |||| | | | || | || |||| || || |||||||||
Sbjct 121 TTAAAAAAAAAAAAAAAAAAAAAAACTGATCTAAACTG-TTTCTGT-GAA-AAAGGGGTA 177
Query 168 ATCAAATAAAATGGAGACGGCTAGGCTTTTCAAATTAGTGTGTGTGATATGTATTGCCAG 227
|||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||
Sbjct 178 ATCAAATAAAATGGAGACAGCTAGGCTTTTCAAATTAGTGTGTGTGTTTTGTATTGCCAG 237
Query 228 TTTGATTCCGACCATACGAGCCAATGTTGCTGATGAGACCGATGAGTATTGGGTAAACAA 287
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 TTTGATTCCGACCATACGAGCCAATGTTGCTGATGAGACCGATGATTATTGGGTAAACAA 297
Query 288 GGCCAATGAAGCTCGTAAACATACCCTTATGGCTTATCATCCCGACCCTTATGAGATCGT 347
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 298 GGCCAATGAAGCTCGTAAACATACCCTTATGGCTTACCATCCCGACCCTTATGAGATCGT 357
Query 348 CGACCACTTCCACGAGCGTCATTACGACAACTCGACTGACGTCGAGGGGACCGAGGAAGA 407
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 CGACCACTTCCACGAGCGTCATTACGACAACTCGACTGATGTCGAGGGGACCGAGGAAGA 417
Query 408 GAAGGCGGTCGCTTCCGAGGAAGAGGACGTCATTGAGATGATTTCTAGTCCGACAAACAG 467
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 418 GAAGGCGGTCGCTTCCGAGGAAGAAGACGTCATTGAGATGATTTCTAGTCCGACAAACAG 477
Query 468 CACAAGGCGGAGCCTAACCGGTAGGGGCAAGGGAAAAGGAAAAGGAAAATGGAGCAAGCT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CACAAGGCGGAGCCTAACCGGTAGGGGCAAGGGAAAAGGAAAAGGAAAATGGAGCAAGCT 537
Query 528 AACGGGACCTTGCACCGCAAGCAACCCCATCGATAAATGCTGGCGTTGCCAGCCTGATTG 587
|| |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 538 AAAGGGACCTTGCACCGCAAGCAACCCGATTGATAAATGCTGGCGTTGCCAGCCCGATTG 597
Query 588 GGCCAGACGTCGCAAGAAGCTCGTTCACTGTGTCCGTGGGTTTGGTTACAGGACCACCGG 647
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 598 GGCCAGGCGTCGCAAGAAGCTCGTTCATTGTGTCCGTGGGTTTGGTTACAGGACCACAGG 657
Query 648 AGGCAAACGCGGCCGCATCTATGTAGTCACGAGCCCCAGAGACGATGATATGGTGAACCC 707
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 658 AGGCAAACGCGGCCGTATATATGTGGTCACGAGCCCCAGAGACGATGATATGGTGAACCC 717
Query 708 TAGACCTGGAACACTACGTCACGCTGTGATCCAGAAAGAACCTCTATGGATCGTTTTTAA 767
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 718 TAGACCTGGAACACTACGTCACGCTGTGATCCAGAAAGAACCTCTATGGATCATTTTTAA 777
Query 768 GCACGATATGAGCATTCGGTTAAGCCAAGAGCTGATGATTACTAGTGACAAGACAATCGA 827
|||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 778 GCACGATATGAGCATTAGGTTAAACCAAGAGCTGATGATTGCTAGTCACAAGACAATCGA 837
Query 828 TGCTCGTGGCGCTAACGTGCACATCGCATATGGTGCTGGTATCACGATGCAGTACGTGCA 887
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 838 TGCTCGTGGCGCTAACGTGCACATCGCATATGGTGCCGGTATTACGATGCAGTATGTGCA 897
Query 888 CAATATCATCATCCATGGGCTTCACGTCCACCACATCGTGAAAAGCAGTGGTGGTTTGAT 947
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 898 CAATATCATCATCCATGGGCTTCACATCCACCACATCGTGCAAAGCAGTGGTGGTATGAT 957
Query 948 AAGAGATTCGATTAACCACTTTGGGCATAGAGGA-GAGGCTGATGGAGATGGTATCTCTA 1006
||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 958 AAGAGATTCGATTGACCACTTTGGGCAAAGAGGACG-GGCTGATGGAGATGGTATCTCTA 1016
Query 1007 TCTTTGGGGCAACAAACATTTGGCTTGACCACATTTCTATGTCTAAATGCCAAGATGGAC 1066
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1017 TCTTCGGGGCAACAAACATTTGGCTTGACCACATTTCTATGTCTAAATGCCAAGATGGCC 1076
Query 1067 TTATCGACGCTATAATGGGTTCCACCGCAATCACCATCTCTAACTCTCATTTCACCCACC 1126
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCATCGACGCTATAATGGGTTCCACCGCAATCACCATCTCTAACTCTCATTTCACCCACC 1136
Query 1127 ACAACGATGTGATGTTGCTTGGTGCACAAAACAACAACATGGATGACAAGAAGATGCAAG 1186
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1137 ACAACGATGTGATGTTGCTTGGTGCACAAGACAACAACATGGATGACAAGAAGATGCAAG 1196
Query 1187 TCACAGTGGCTTACAACCATTTCGGAAAAGGACTTGTGCAGAGGATGCCTAGGGTCCGAT 1246
||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||
Sbjct 1197 TCACAGTGGCTTACAACCATTTCGGTAAAGGACTTGTCCAGAGGATGCCTAGGATCCGAT 1256
Query 1247 GGGGTTTCGTCCACGTTGTCAACAATGACTACACTCATTGGGAGCTTTACGCGATCGGTG 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GGGGTTTCGTCCACGTTGTCAACAATGACTACACTCATTGGGAGCTTTACGCGATCGGTG 1316
Query 1307 GTAGCCAAGGTCCTACCATTCTCAGCCATGGAAACCGTTTCATCGCTCCTCCTCACAAAC 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTAGCCAAGGTCCTACCATTCTCAGCCATGGAAACCGTTTCATCGCTCCTCCTCACAAAC 1376
Query 1367 AACACTACAGAGAGGTGACAAAGAGGGATTATGCTTCAGAAAGCGAATGGAAAAACTGGA 1426
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1377 AACACTACAGAGAGGTGACAAAGAGGGATTATGCTTCAGAAAGTGAATGGAAAAACTGGA 1436
Query 1427 ACTGGAGATCCGAGAAAGATGTTTTCATGAACAATGCATATTTCAGACAATCTGGAAATC 1486
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1437 ACTGGAGATCCGAGAAAGATGTATTCATGAACAATGCATATTTCAGACAATCTGGAAATC 1496
Query 1487 CTCATTTCAAGTGTTCGCATTCTAGGCAACAGATGATAAAGCCCAAAAATGGTATGGCCG 1546
||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 1497 CTCATTTCAAGTGTTCGCACTCTAGGCAACAGATGATTAAGCCCAAACATGGTGTGGCCG 1556
Query 1547 TTTCTAAGCTTACCAAATACGCCGGAGCATTGGATTGCCGGGTCGGAAAAGCATGCTAAA 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 TTTCTAAGCTTACCAAATACGCCGGAGCATTGGATTGCCGGGTCGGAAAAGCATGCTAAA 1616
Query 1607 AA-TATAACTCACTACTAAATTTTTTCTCTTTGTATCAAAGCCTAT--ATA-A-GAACTG 1661
|| |||||||||||||||| ||||||||||||||||| | |||||| ||| | ||||||
Sbjct 1617 AAATATAACTCACTACTAATTTTTTTCTCTTTGTATCTAGGCCTATCTATATAAGAACTG 1676
Query 1662 ATAAAATCATGGGGTAAAAATGGAAATTAATTATTCTAATTTATGAAAG-G-CTCTGTGT 1719
| ||||||||||||||||| ||||||||| || ||||||||||||| | ||||||||
Sbjct 1677 ACAAAATCATGGGGTAAAA-TGGAAATTA-TT---CTAATTTATGAAAAAGTCTCTGTGT 1731
Query 1720 AAAGAATCTATGCGAACGGCTTGATACTTTGTAACTCTTAAtttgtttgtgtatgttttt 1779
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1732 AAAGAATATATGCGAACGGCTTGATACTTTGTAACTCT-AATTTGTTTGTGTATGTTTTG 1790
Query 1780 ttgtgctcgttaatttgtttttttgCAAGGAT 1811
|||||||||||||| |||||||||||||||||
Sbjct 1791 TTGTGCTCGTTAATCTGTTTTTTTGCAAGGAT 1822
> Ahg488352 jgi|Araly1|488352|fgenesh2_kg.6__1486__AT5G15110.1
Length=1617
Score = 848 bits (459), Expect = 0.0
Identities = 1146/1467 (78%), Gaps = 90/1467 (6%)
Strand=Plus/Plus
Query 171 AAATAAA-ATGGAGACGGCTAGGCTTTTCAAA-TTAG-TGTGTGTGATATGTATTGCCAG 227
||| ||| ||||||| |||||||| | ||||| || | ||| | || | ||||||||| |
Sbjct 191 AAAGAAAGATGGAGATGGCTAGGC-TGTCAAAGTT-GATGTTTATGTTTTGTATTGCC-G 247
Query 228 TT-TGATTCCGACCATACGAGCCAATGTTGCTGATGAGAC-CGATGAGTATTGGGTAAAC 285
|| ||||||||||||| |||| || || | |||| | || ||||||| ||| |
Sbjct 248 TTCTGATTCCGACCATTCGAGGTAACATT--T-CTGAG-CTGGACGAGTATT-GGT-CGC 301
Query 286 AA-G-GCCAATGAAGCTC-GTA-AACAT-ACCCTT-ATGGCTTATCATCCCGACCCTTAT 339
|| | ||| | ||||| | | | || | || ||| | ||||| ||| | || |||||
Sbjct 302 AACGAGCCGACGAAGC-CAG-AGAA-TTCACTCTTCA-AGCTTACCATTCTGATCCTTAC 357
Query 340 GAGATCGTCGACCACTTCCACGAGCGTCATTACGACAACTCGACTGACG-T-CGAGGGGA 397
|| |||||||| ||||| || |||||||| ||||||||||| ||||| | | | | ||
Sbjct 358 GAAATCGTCGATCACTTTCATGAGCGTCACTACGACAACTCTACTGATGTTAC-A-ACGA 415
Query 398 CCGAGGAAGA--G-AAGGCG--GTC-GCTTCCGAGGAAGAGGACG-TCATTGAGATGATT 450
|||||||||| | | ||| | | | |||||| | || | ||||||| ||| |
Sbjct 416 CCGAGGAAGAGGGTGATGCGAAGCCTGAAGAGGAGGAAAAAGA-GTTCATTGAAATGCTC 474
Query 451 TCTAGTC-CGACAAACAGCACAAGGCGGAGCCTAACCGGTAGGGGCAAGGGAAAAGGAAA 509
|| | |||| |||||||| || || || || || | | || ||||| ||
Sbjct 475 GGAAG-CTCGACGAACAGCACCAGACGAAG-CT------TA--AG--A-GGTAAAGGTAA 521
Query 510 AGGAAAATGGAGCAAGCTAACGGGACCTTGCACCGCAAGCAACCCCATCGATAAATGCTG 569
||| |||||||| ||||||| ||||||||| |||||||| ||||| || |||||||| ||
Sbjct 522 AGGCAAATGGAGTAAGCTAAAGGGACCTTGTACCGCAAGTAACCCGATAGATAAATGTTG 581
Query 570 GCGTTGCCAG-CCTGATTGGGC-CAGACGTCGCAAGAAGCTCGTTCAC--TGTGTCCGTG 625
|||||||| | | |||||||| || ||||| |||| ||| | ||| |||||||| |
Sbjct 582 GCGTTGCC-GATCGGATTGGGCTAAG-CGTCGGAAGAGGCT--TACACGTTGTGTCCGAG 637
Query 626 GGTTTGGTTACAGGACCACCGGAGGCAAACGCGGCCGCATCTATGTAGTCACGAGC-CCC 684
|||| ||| ||||||| |||||||| ||||| || |||||||| || || || ||| ||
Sbjct 638 GGTTCGGTCACAGGACGACCGGAGGAAAACGAGGACGCATCTACGTGGTTACAAGCAACC 697
Query 685 AGAGACGATGATATGGTGAACCCTAGACCTGGAACACTACGTCACGCTGTGATCCAGAAA 744
||||| || ||||||||||||| ||| || ||| | ||||| || || || |||||
Sbjct 698 -TCGACGACGACATGGTGAACCCTAAACCCGGGACATTGCGTCATGCCGTAATTCAGAAG 756
Query 745 GAACCTCTATGGATCGTTTTTAAGCACGATATGAGCATTCGGTTAAGCCAAGAGCTGATG 804
|||||||| |||||| |||| ||| | ||||||||||||||||||| ||||||||| |
Sbjct 757 GAACCTCTCTGGATCATTTTCAAGAATGATATGAGCATTCGGTTAAACCAAGAGCTTCTC 816
Query 805 ATTACTAGTGACAAGACAATCGATGCTCGTGGCGCTAACGTGCACATCGCATATGGTGCT 864
|||| ||| ||||||| |||||||| || || || || || || | || |||||||
Sbjct 817 ATTAATAGCCACAAGACTATCGATGCACGAGGAGCCAATGTCCATGTAGCGCATGGTGCA 876
Query 865 GGTATCACGATGCAGTACGTGCACAATATCATCATCCATGGGCTTCACGTCCACCACA-- 922
|| ||||| ||||||| ||| | ||| ||||||||||||| || || | |||||||
Sbjct 877 GGGATCACAATGCAGTTTGTGAAAAATGTCATCATCCATGGACTGCATATTCACCACATT 936
Query 923 TCGTGAAAAGCAGTGGTGGTTTGATAAGAGATTCGATTAACCACTTTGGGCATAGAGGA- 981
|| | | || || |||||| |||| |||| ||| | |||| ||| || || |||||
Sbjct 937 TC-CG-AGAGTAGCGGTGGTATGATCCGAGACTCGGTCGACCA-TTTTGGAAT-GAGGAC 992
Query 982 GAG-GCTGATGGAGATGGTATCTCTATCTT-TGGGGCAACAAACATTTGGCTTGACCACA 1039
|| ||||||||||| ||| | || || || || | | ||||||||||||||||| |
Sbjct 993 TAGAGCTGATGGAGACGGTTTATCGAT-TTACGGTTCGTCTAACATTTGGCTTGACCATA 1051
Query 1040 TTTCTATGTCTAAATGCCAAGATGGACTTATCGACGCTATAATGGGTTCCAC-CGCAATC 1098
|||| ||||||||||| |||||||||||||| || || || | || ||||| || ||
Sbjct 1052 TTTCGATGTCTAAATGTCAAGATGGACTTATTGATGCCATTGTTGGATCCACTGGC-ATT 1110
Query 1099 ACCATCTCTAACTCTCATTTCACCCACCACAACGATGTGATGTTGCTTGGTGCACAAAAC 1158
|| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1111 ACAATCTCCAACTCTCACTTCACTCACCACAACGATGTGATGTTGCTTGGTGCTCAAAAC 1170
Query 1159 AACAACATG--G-ATGACAAGAAGATGCAAGTCACAGTGGCTTACAACCATTTCGGAAAA 1215
| | | ||| | | |||||| | |||||||||||||| ||||| |||||||| || |||
Sbjct 1171 A-CGA-ATGAAGCA-GACAAGCATATGCAAGTCACAGTTGCTTATAACCATTTTGGTAAA 1227
Query 1216 GGACTTGTGCAGAGGATGCCTAGGGTCCGATGGGG-TTTCGTCCACGTTGTCAACAATGA 1274
|||||||| ||||| ||||| ||| |||||||||| ||| || || ||||| ||||||||
Sbjct 1228 GGACTTGTACAGAGAATGCCAAGGATCCGATGGGGATTT-GTTCATGTTGTGAACAATGA 1286
Query 1275 CTACACTCATTGGGAGCTTTACGCGATCGGTGGTAGCCAAGGTCCTACCATTCTCAGCCA 1334
||||||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||||||
Sbjct 1287 CTACACTCACTGGGAGCTTTATGCGATCGGAGGTAGTCAAGGTCCTACGATTCTCAGCCA 1346
Query 1335 TGGAAACCGTTTCATCGCTCCTCCTCACAAACAACACTACAGAGAGGTGACAAAGAGGGA 1394
||||||||| ||||| |||||||| ||||||| || |||||||||||||||||||| ||
Sbjct 1347 TGGAAACCGATTCATAGCTCCTCCACACAAACCTCATTACAGAGAGGTGACAAAGAGAGA 1406
Query 1395 TTATGCTTCAGAA-AGCGAATGGAAAAACTGGAACTGGAGATCCGAGAAAGATGTTTTCA 1453
||||||||| || | || |||||| |||||||||||||||| ||||||||||| ||||
Sbjct 1407 TTATGCTTCGGAGGAT-GAGTGGAAACACTGGAACTGGAGATCTGAGAAAGATGTATTCA 1465
Query 1454 TGAACA-ATGCATATTTCAGACAATCTGGAAATCCTCATTTCAAGTGTTCGCATTCTAGG 1512
||||| | || |||||||||||||||||||||||||| | ||| ||| | || | ||
Sbjct 1466 TGAACGGA-GCTTATTTCAGACAATCTGGAAATCCTCAATACAAATGTGCACACACAAGA 1524
Query 1513 CAACAGATGAT-AAAGCCCAAAAATGGTAT-GGCCGTTTCTAAGCTTACCAAATACGCCG 1570
||||| ||||| ||| || ||| |||| || ||| ||||| ||||| |||||||| ||||
Sbjct 1525 CAACAAATGATCAAA-CCGAAACATGG-ATTGGCTGTTTCAAAGCTGACCAAATATGCCG 1582
Query 1571 GAGCA-TTGGATTGCCGGGTCGGAAAA 1596
||||| ||| ||||| | ||||| |||
Sbjct 1583 GAGCACTTG-ATTGCAGAGTCGGGAAA 1608
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5