BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01280.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477400 jgi|Araly1|477400|fgenesh2_kg.3__101__AT3G01280.1 1620 0.0
> Ahg477400 jgi|Araly1|477400|fgenesh2_kg.3__101__AT3G01280.1
Length=1083
Score = 1620 bits (877), Expect = 0.0
Identities = 988/1041 (95%), Gaps = 10/1041 (1%)
Strand=Plus/Plus
Query 127 TCCTCCAACTTTCTCAGATAAGCAACAATGGTGAAAGGTCCCGGTCTCTACACCGAAATC 186
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCCTCCAACTTTCTCAGATAAGCAACAATGGTGAAAGGTCCTGGTCTCTACACCGAAATC 60
Query 187 GGCAAAAAGGCCAGAGATCTTCTGTACAAAGACCACAACAGTGACCAGAAATTCAGTATC 246
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGCAAAAAAGCCAGAGATCTTCTGTACAAGGACCACAACAGTGACCAGAAATTCAGTATC 120
Query 247 ACCACTTTCTCTCCTGCCGGTGTTGCCATCACCTCAACCGGAACTAAGAAAGGTGACTTA 306
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 ACCACTTTCTCTCCTGCCGGTGTTGCCATCACCTCAACCGGAACTAAGAAAGGCGACTTA 180
Query 307 TTGTTGGGAGATGTCGCTTTTCAGTCGAGGCGAAAGAACATTACTACTGATTTGAAAGTT 366
|||||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct 181 TTGTTGGGAGATGTAGCTTTCCAATCGAGGCAAAAGAACATTACTACTGATTTGAAAGTT 240
Query 367 TGCACTGATTCTACTTTTCTGATCACCGCTACCGTTGATGAGGCTGCACCCGGACTGAGG 426
||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||| |
Sbjct 241 TGCACTGATTCTACTGTTCTGATCACTGCTACGGTTGATGAGGCTGCACCTGGACTGAAG 300
Query 427 TCAATCTTCAGCTTCAAGGTTCCTGACCAAAATTCTGGCAAGGTTGAGCTGCAATACTTG 486
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 TCAATCTTCAGCTTCAAGGTTCCTGACCAAAATTCTGGCAAGATTGAGCTGCAATACTTG 360
Query 487 CATGAGTACGCCGGTATCAGCACAAGCATGGGATTGACTCAGAACCCAACTGTCAACTTC 546
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 361 CATGACTACGCCGGTATCAGCACGAGCATGGGATTGACTCAGAACCCAACTGTCAACTTC 420
Query 547 TCTGGTGTGATTGGCTCCAATGTCTTGGCTGTTGGTACTGATGTTTCATTTGACACCAAG 606
|| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 TCCGGTGTTATTGGCACCAATGTCTTGGCTGTTGGTACTGATGTTTCATTCGACACCAAG 480
Query 607 TCTGGAAATTTCACCAAGATCAATGCTGGTTTAAGCTTCACCAAGGAGGACTTAATTGCC 666
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 481 TCTGGAAATTTCACCAAGATCAATGCTGGTTTAAGCGTCACCAAGGATGACTTAATTGCC 540
Query 667 TCCCTTACTGTGAACGACAAGGGCGATCTATTGAATGCATCTTACTATCACATTGTGAAC 726
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TCCCTTACTGTGAATGAGAAGGGCGATCTATTGAATGCATCTTACTATCAAATTGTGAAC 600
Query 727 CCGCTGTTCAACACTGCGGTTGGAGCCGAAGTGAGCCACAAGTTATCTAGCAAGGACAGC 786
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 601 CCGCTGTTCAACACTGCGGTTGGAGCCGAAGTGAGCCACAAGTTCTCTAGCAAGGACAAC 660
Query 787 ACCATAACTGTTGGAACACAGCACTCGCTTGACCCCTTGACCTCTGTGAAGGCTCGTGTC 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACCATAACTGTTGGAACACAGCACTCGCTTGACCCCTTGACCTCTGTGAAGGCTCGTGTC 720
Query 847 AATAGTGCGGGTATTGCAAGTGCTCTCATTCAACACGAGTGGAAACCCAAGTCATTCTTC 906
|||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 721 AATAGTGCAGGTATTGCAAGTGCGCTCATTCAACACGAGTGGAAGCCCAAGTCGTTCTTC 780
Query 907 ACAATCTCTGGAGAAGTCGACACAAAGTCAATTGACAAGAGTGCTAAAGTTGGATTGGCT 966
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 781 ACAATCTCTGGAGAAGTCGACACAAAGTCCATTGACAAGAGTGCTAAAGTTGGGTTGGCT 840
Query 967 CTCGCACTCAAGCCTTGAAACTGAGATGGAAGAAGAAGTTGCAATAGtttttttAAACTA 1026
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||
Sbjct 841 CTCGCACTCAAGCCTTGAAACTGAGATGGAAGAAGAAGTTGCTATAGCTTTTT-AA-CTA 898
Query 1027 GTTTCTTTCTACGTACTCTGTTTTTTCTCTGCTTGGTTCATGGTTTGA-GTGGGCAACTA 1085
||||||||||||||||||||||||| |||||||||||||||||||| | | ||| ||||
Sbjct 899 GTTTCTTTCTACGTACTCTGTTTTT-CTCTGCTTGGTTCATGGTTTTAAGGGGGGTACTA 957
Query 1086 ---CTGATCTTTCCCATTTTCCT-GCCGGATTTGTAGAAGAATAAAAAGGTTGAAAATG- 1140
|||||||||||||||| | | | |||||||||||||||||||||||||||||| |
Sbjct 958 GTACTGATCTTTCCCATTT-CTTTGTTGGATTTGTAGAAGAATAAAAAGGTTGAAAACGG 1016
Query 1141 ATCATCTTGAGATGGTGATGA 1161
|||||||||||||||||||||
Sbjct 1017 ATCATCTTGAGATGGTGATGA 1037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5