BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01290.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477399 jgi|Araly1|477399|fgenesh2_kg.3__100__AT3G01290.1 1585 0.0
> Ahg477399 jgi|Araly1|477399|fgenesh2_kg.3__100__AT3G01290.1
Length=1108
Score = 1585 bits (858), Expect = 0.0
Identities = 1015/1085 (94%), Gaps = 34/1085 (3%)
Strand=Plus/Plus
Query 1 AAACTTACAGAGAGACAAATACCTATAATAAGCCATTCATAAT-CTTCTTGCTTCTT-GT 58
||||||||| ||||||||||| | | |||| | ||| | | ||||||| ||||| ||
Sbjct 1 AAACTTACACAGAGACAAATA--T-TCATAA-TC-TTC-T--TGCTTCTTG-TTCTTAGT 51
Query 59 TC---AGAA-TAATGGGGAATCTTTTCTGTTGCGTGCTTGTGAAGCAATCAGATGTTGCG 114
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 TCTGAAGAATTAATGGGGAATCTTTTCTGTTGCGTGCTTGTGAAGCAATCAGATGTTGCG 111
Query 115 GTCAAGGAGAGATTTGGCAAATTCCAAAAAGTACTTAATCCAGGTCTCCAATTTGTTCCA 174
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 112 GTCAAGGAGAGATTTGGCAAATTCCAAAAAATACTTAATCCAGGTCTCCAGTTTGTTCCC 171
Query 175 TGGGTCATCGGTGATTACGTCGCCGGTACACTGACCCTTCGTCTTCAGCAACTCGATGTT 234
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 172 TGGGTCATCGGTGATTACGTCGCCGGTACACTGACCCTCCGTCTTCAGCAACTCGATGTT 231
Query 235 CAGTGTGAAACCAAAACAAAGGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATAC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CAGTGTGAAACCAAAACAAAGGACAATGTGTTTGTGACAGTGGTTGCATCCATACAATAC 291
Query 295 AGAGTCTTAGCTGACAAGGCAAGTGATGCTTTTTACAGACTCAGCAATCCAACCACCCAA 354
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 292 AGAGTCTTGGTTGACAAGGCAAGTGATGCTTTTTACCGACTCAGCAATCCAACCACCCAA 351
Query 355 ATCAAAGCCTACGTCTTTGATGTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGAT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 ATCAAAGCCTACGTCTTTGATGTGATCAGAGCATGTGTTCCAAAGCTGAACTTGGACGAT 411
Query 415 GTGTTCGAGCAGAAGAATGAAATTGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATG 474
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 412 GTGTTCGAGCAGAAGAATGAAATCGCCAAATCTGTGGAAGAAGAGCTAGACAAAGCCATG 471
Query 475 ACTGCTTATGGTTACGAAATCCTTCAAACCCTAATTATCGACATTGAGCCTGATCAACAG 534
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 472 ACTGCTTATGGTTACGAGATCCTTCAAACCCTAATCATCGACATCGAGCCTGATCAACAG 531
Query 535 GTTAAACGTGCCATGAACGAAATCAACGCCGCGGCGAGGATGAGAGTGGCAGCGAGCGAA 594
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 532 GTTAAACGTGCCATGAACGAAATCAACGCCGCGGCGAGGATGAGAGTGGCCGCGAACGAA 591
Query 595 AAAGCAGAGGCTGAGAAAATCATTCAGATCAAAAGAGCAGAGGGTGAAGCAGAGTCAAAG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AAAGCAGAGGCTGAGAAAATCATTCAGATCAAAAGAGCAGAGGGTGAAGCAGAGTCAAAG 651
Query 655 TACCTGTCGGGACTCGGAATCGCTCGGCAGAGACAAGCGATCGTGGACGGTCTGAGAGAC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TACCTGTCGGGACTCGGAATCGCTCGGCAGAGACAAGCGATCGTGGACGGTCTGAGAGAC 711
Query 715 AGTGTTCTAGGGTTCGCAGGAAACGTGCCAGGGACGTCAGCGAAGGATGTGTTGGACATG 774
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 712 AGTGTTCTAGGGTTCGCAGGAAACGTGCCAGGGACGTCAGCCAAGGATGTGTTGGACATG 771
Query 775 GTGATGATGACTCAGTACTTTGACACAATGAGAGATATCGGAGCAACTTCTAAATCCTCT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 772 GTGATGATGACTCAGTACTTTGACACAATGAGAGATATCGGAGCAACTTCTAAAGCCTCG 831
Query 835 GCGGTGTTTATCCCTCACGGTCCAGGCGCCGTCTCTGACGTGGCAGCGCAGATTCGAAAT 894
|| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 832 GCCGTGTTTATCCCTCACGGTCCCGGCGCCGTCTCTGACGTGGCAACGCAGATTCGAAAT 891
Query 895 GGATTATTACAGGCCAACAATGCCTCCT------AATCACTCAAGTCAAATTGTCTTGGT 948
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 892 GGATTATTACAGGCCAACAATGCCTCCTCCTCCTAATCACTCAAGTCAAATTGTTTTGGT 951
Query 949 CGTCTCTTTATA-TATTTTTGTATCTTCTT-ATTAAAAA--GGTAAATTTGACTTTTAAT 1004
||||||||| || || ||||||||||| || |||||||| ||||||| | | | | |
Sbjct 952 CGTCTCTTT-TAATACTTTTGTATCTTTTTTATTAAAAAAAGGTAAATAT-A-TAATGGT 1008
Query 1005 ATAATGGT-GTGCTTATTGTGATT-TGTCATT-ATGTTTGTACCTATCTCTTTTGTGAGT 1061
|| || | ||| || | || ||| ||| ||| ||||||||||||||||||| |||||||
Sbjct 1009 GTACTGATTGTGATT-T-GTCATTATGT-ATTTATGTTTGTACCTATCTCTTCTGTGAGT 1065
Query 1062 TGTGT 1066
|||||
Sbjct 1066 TGTGT 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5