BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01300.1
Length=1942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927644 jgi|Araly1|927644|scaffold_300101.1 1744 0.0
Ahg940990 jgi|Araly1|940990|scaffold_601534.1 1308 0.0
Ahg482986 jgi|Araly1|482986|fgenesh2_kg.4__2046__AT2G39660.1 76.8 5e-13
> Ahg927644 jgi|Araly1|927644|scaffold_300101.1
Length=1489
Score = 1744 bits (944), Expect = 0.0
Identities = 1077/1140 (94%), Gaps = 14/1140 (1%)
Strand=Plus/Plus
Query 240 TTTTGGGGGAGATGGGTTTCGATTCTGTTAAAGTTATGGAGAATTGGCAATCCAAGACAT 299
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 12 TTTTGGGGGAGATGGGTTTAGATTCTGTCAAAGTTATGGAGAATTGGCAATCGAAGACAT 71
Query 300 CTAATgagaatgagaagaagaagaagaagcggaggaggaagaagaaCAACAATGTCAGAA 359
||||||||| ||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 72 CTAATGAGAGTGATAAGAAGAAGAAG-A--GGAGGAGGAAGAAGAACAACAATGTCAGAA 128
Query 360 ACAGTGAACAT-T--------ATGAAGAAGAAGCAAATGGGTGTTGGGTCAAATTTAGGT 410
||| ||||||| | | ||||||||||| |||||||||||||||||||||||||
Sbjct 129 ACACTGAACATGTAGACGAAGAAGAAGAAGAAGCTAATGGGTGTTGGGTCAAATTTAGGT 188
Query 411 ATATAGTCTGTTGCGCTTCTTCAACATCAGACGTTGAGACCTCTCTCACTCTCTCTACTA 470
|||||||||||||| ||||||||| ||||||||||| | |||||||| |||||| || |
Sbjct 189 TTATAGTCTGTTGCGTTTCTTCAACTTCAGACGTTGATAGCTCTCTCAGTCTCTCCACAA 248
Query 471 GCACTGTGGGAAGTCAGTCCGCAATTGTGCAATCAAATGACCAACCGGTTGGCCCAGTCT 530
||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 249 GCACTGTGGGAAGTCAGTCCGCAATTGTGAAATCGAATGACCAACCGGTTGGCCCTGTCT 308
Query 531 CTTCTACTACTACAACTAGCAATGCAGAAAGCTCTTTGTCCACTCCTATCATAAGTGAAG 590
||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 309 CTTCTACCACTACAACTAGCAATGCAGAAAGCTCTTTGTCCACTCCAATGATAAGTGAAG 368
Query 591 AACTTAACATCTATTCTCACCTT-AAGAAGTTTTCTTTCATTGATCTCAAGTTGGCTACT 649
||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 369 AACTTAAGATCTATTCTCA-CTTAAAGAAGTTTACTTTCATTGATCTCAAGTTGGCTACT 427
Query 650 AGAAATTTCAGACCTGAAAGCCTTCTCGGAGAAGGTGGCTTTGGTTGTGTCTTCAAAGGC 709
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 428 AGAAATTTCAGACCCGAAAGTCTTCTCGGAGAAGGTGGCTTTGGTTGCGTCTTCAAAGGG 487
Query 710 TGGGTCGAGGAGAACGGAACTGCTCCTGTTAAGCCTGGCACTGGCCTTACTGTTGCCGTC 769
|||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||
Sbjct 488 TGGGTCGAGGAGAACGGAACTGCTCCTGTTAAGCCTGGTACTGGGCTCACTGTAGCCGTC 547
Query 770 AAAACCTTAAATCCTGATGGCCTTCAGGGTCATAAAGAGTGGCTTGCTGAGATTAATTAT 829
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 548 AAAACCTTAAATCCTGACGGACTTCAGGGTCATAAAGAGTGGCTTGCTGAGATTAATTAT 607
Query 830 CTTGGTAATCTTCTCCATCCCAATCTTGTTAAACTGGTGGGTTATTGTATCGAAGATGAT 889
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 CTTGGTAATCTTCTTCATCCCAATCTTGTTAAACTGGTGGGTTATTGTATCGAAGATGAT 667
Query 890 CAAAGGCTGCTTGTATATGAGTTTATGCCTCGAGGAAGTTTGGAGAATCACCTTTTCAGA 949
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 668 CAAAGGCTGCTGGTATATGAGTTTATGCCTCGAGGAAGTTTGGAGAATCACCTTTTTAGA 727
Query 950 AGGTCCTTGCCTCTTCCATGGTCAATTCGGATGAAGATTGCATTAGGTGCTGCAAAGGGT 1009
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 728 AGGTCGTTGCCTCTTCCATGGTCAATTCGGATGAAGATTGCGTTAGGTGCTGCAAAGGGT 787
Query 1010 CTCAGTTTCCTTCACGAAGAAGCTTTAAAGCCGGTCATTTATCGAGATTTCAAAACCTCA 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CTCAGTTTCCTTCACGAAGAAGCTTTAAAGCCGGTCATTTATCGAGATTTCAAAACCTCA 847
Query 1070 AATATTTTACTGGATGGGGAGTACAATGCTAAATTATCAGATTTTGGGCTTGCCAAAGAT 1129
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 AATATTTTACTGGATGCAGAGTACAATGCTAAATTATCAGATTTTGGGCTTGCCAAAGAT 907
Query 1130 GCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGAGTCATGGGCACTTATGGTTACGCT 1189
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 908 GCTCCTGATGAAGGCAAAACTCATGTGTCTACTCGCGTCATGGGCACTTATGGTTACGCT 967
Query 1190 GCCCCCGAGTATGTAATGACCGGTCACTTGACATCAAAAAGCGACGTTTACAGTTTCGGT 1249
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 968 GCTCCCGAGTATGTAATGACCGGTCACTTGACATCAAAAAGCGATGTTTACAGTTTCGGT 1027
Query 1250 GTGGTTCTTCTCGAAATGCTGACTGGTAGAAGATCAATGGACAAAAATCGACCAAACGGT 1309
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1028 GTGGTTCTTCTTGAAATGCTGACTGGTAGAAGATCTATGGACAAAAACCGACCAAACGGT 1087
Query 1310 GAACACAACCTCGTTGAATGGGCGAGACCGCATCTCCTGGACAAAAGAAGATTCTACCGG 1369
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GAACACAACCTTGTCGAATGGGCGAGACCGCATCTCCTGGACAAAAGAAGATTCTACCGG 1147
Score = 527 bits (285), Expect = 1e-148
Identities = 324/342 (95%), Gaps = 6/342 (2%)
Strand=Plus/Plus
Query 1409 GGAGCACAAAAAGTGACTCAGCTTGCAGCACAATGCCTTAGCCGTGACTCCAAAATAAGA 1468
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 GGAGCACAAAGAGTGACTCAGCTTGCAGCACAATGCCTTAGCCGTGACTCCAAAATAAGA 1207
Query 1469 CCCAAAATGAGTGAAGTGGTGGAAGTACTTAAGCCTCTCCCACACCTCAAGGACATGGCT 1528
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1208 CCCAAAATGAGTGAAGTGGTGGAAGTCCTTAAGCCTCTCCCACACCTCAAGGACATGGCT 1267
Query 1529 AGCGCTTCTTACTACTTCCAGACAATGCAAGCTGAACGTTTGAAAGCTGGTTCTGGTTCT 1588
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1268 AGCGCTTCTTACTACTTCCAGACTATGCAAGCTGAACGTTTGAAAGCTGGGTCTGGGTCT 1327
Query 1589 GGTTC-T-GG-TCGTGGATTCGGGTCAAGAAACGGGCAACCA---GTGTTTCGGACATTG 1642
|| || | || |||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1328 GGGTCATCGGGTCGTGGATTCGGATCAAGAAACGGGCAACCACCAGTGTTTCGGACATTG 1387
Query 1643 TCTAGTCCTCATGGTCAAGCTGGTTCGTCGCCTTATCGTCATCAGATTCCGTCTCCTAAG 1702
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1388 TCTAGTCCTCATGGTCAAGCTGGTTCTTCGCCTTATCGTCATCAGATTCCGTCTCCTAAG 1447
Query 1703 CCTAAAGGTGCAACTACTTAGATTGGCTCGCAAGTGTGGACG 1744
||||||||||||||||||||||||||||| | ||||||||
Sbjct 1448 CCTAAAGGTGCAACTACTTAGATTGGCTCTTTATTGTGGACG 1489
> Ahg940990 jgi|Araly1|940990|scaffold_601534.1
Length=1550
Score = 1308 bits (708), Expect = 0.0
Identities = 1272/1536 (83%), Gaps = 71/1536 (5%)
Strand=Plus/Plus
Query 241 TTTGGGGGAGATGGGTTTCGATTCTGTTAAAGTTATGGAGAATTGGCAATCCAAGACATC 300
||| || ||||||||||| ||| ||||||||| || || ||||||| |||| ||| | |
Sbjct 13 TTT-GGTGAGATGGGTTTGGATGCTGTTAAAGCTAAGGGGAATTGGAAATCGGAGAAACC 71
Query 301 TAATgagaatgagaa-ga-ag-aagaag-a-agcgga--g-gaggaagaagaaCAACAAT 352
||| |||| |||||| | || |||||| | ||| | | || | | || ||||| ||
Sbjct 72 TAAAGAGACTGAGAATAAGAGCAAGAAGAATAGC-AATGGTGATG-ATAATAACAA-AA- 127
Query 353 GTCAGA-AACAGTGAACATTATGA-AGAAGAAGCAAATGGGTGTTGGGTCAAATTTAGGT 410
|| ||| | | ||| | | || ||||||||||| |||||||||||| ||||||||||
Sbjct 128 GT-AGAGATGA-CGAAGAAGA-GACAGAAGAAGCAAGTGGGTGTTGGGTTAAATTTAGGT 184
Query 411 ATATAG-TCT-GTTGCGCT-TCTTCAACATCAGACGTTGA-GAC--C-TC-TC-TC-AC- 459
||| | | | ||||| | |||||| ||||||| |||| | | | || || || ||
Sbjct 185 TTAT-GAT-TGGTTGC-ATACCTTCAAAATCAGACCTTGATG-CTTCTTCTTCTTCTACT 240
Query 460 -TC--T--CTCTA-CTAGCACTG-TG--------GGAAGTCAGTCCGCAATTGTGCAATC 504
|| | ||||| || |||||| || | |||| | || |||| || | |||
Sbjct 241 ATCTATGGCTCTACCT-GCACTGTTGCAACAATTGAAAGTAAATCGGCAAATGAGAAATT 299
Query 505 AAATGACCAACC-G--GTTGGCCCAGTCTCTTCTACTACTACAACTAGCAATGCAGAAAG 561
||| || ||||| | | ||| ||||| || || || || ||||||||||||||||||||
Sbjct 300 AAACGATCAACCAGTTGGTGGTCCAGTTTCCTCCACAACAACAACTAGCAATGCAGAAAG 359
Query 562 CTCTTTGTCCACTCCTATCATAAGTGAAGAACTTAACATCTATTCTCACCTTAAGAAGTT 621
||||| || ||||| || || |||||||||||||| || | ||||||||| | ||||||
Sbjct 360 CTCTTCATCTACTCCAATGATCAGTGAAGAACTTAAGATTTCTTCTCACCTCAGGAAGTT 419
Query 622 TTCTTTCATTGATCTCAAGTTGGCTACTAGAAATTTCAGACCTGAAAGCCTTCTCGGAGA 681
| |||||| |||||| ||| | | ||||||||||||||||| || || ||||| |||||
Sbjct 420 TACTTTCAATGATCTTAAGCTATCAACTAGAAATTTCAGACCGGAGAGTCTTCTTGGAGA 479
Query 682 AGGTGGCTTTGGTTGTGTCTTCAAAGGCTGGGTCGAGGAGAACGGAACTGCTCCTGTTAA 741
|||||| |||||||||||||||||||| ||| |||| || ||||||||||||||||||||
Sbjct 480 AGGTGGTTTTGGTTGTGTCTTCAAAGGATGGATCGAAGAAAACGGAACTGCTCCTGTTAA 539
Query 742 GCCTGGCACTGGCCTTACTGTTGCCGTCAAAACCTTAAATCCTGATGGCCTTCAGGGTCA 801
||||| ||||||||||| ||||| || |||||||||||||||||||| ||||| |||||
Sbjct 540 ACCTGGTACTGGCCTTACAGTTGCAGTTAAAACCTTAAATCCTGATGGACTTCAAGGTCA 599
Query 802 TAAAGAGTGGCTTGCTGAGATTAATTAT-CTTGGTAATCTTCTCCATCCCAATCTTGTTA 860
||||| ||||||||||||||||||| | |||||||| ||||||||||| ||||| ||||
Sbjct 600 CAAAGAATGGCTTGCTGAGATTAATT-TCCTTGGTAACCTTCTCCATCCAAATCTAGTTA 658
Query 861 AACTGGTGGGTTATTGTATCGAAGATGATCAAAGGCTGCTTGTATATGAGTTTATGCCTC 920
| ||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 659 AGCTGGTTGGTTATTGCATCGAAGATGATCAAAGGTTGCTTGTGTATGAGTTTATGCCTC 718
Query 921 GAGGAAGTTTGGAGAATCACCTTTTCAGAAGGTCCTTGCCTCTTCCATGGTCAATTCGGA 980
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| || ||||
Sbjct 719 GAGGAAGTTTAGAGAATCACCTTTTCAGAAGGTCGTTGCCTCTTCCTTGGTCTATCCGGA 778
Query 981 TGAAGATTGCATTAGGTGCTGCAAAGGGTCTCAGTTTCCTTCACGAAGAAGCTTTAAAGC 1040
||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 779 TGAAGATTGCATTAGGTGCTGCAAAAGGTCTCAGTTTCCTCCATGAAGAAGCTTTGAAGC 838
Query 1041 CGGTCATTTATCGAGATTTCAAAACCTCAAATATTTTACTGGATGGGGAGTACAATGCTA 1100
| || || ||||||||||||||||| ||||| |||||||| |||| || |||||||| |
Sbjct 839 CTGTTATATATCGAGATTTCAAAACATCAAACATTTTACTTGATGCAGACTACAATGCAA 898
Query 1101 AATTATCAGATTTTGGGCTTGCCAAAGATGCTCCTGATGAAGGCAAAACTCATGTGTCTA 1160
|| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 899 AACTATCAGATTTTGGACTTGCCAAAGATGCTCCTGATGAAGGCAAAACCCATGTTTCTA 958
Query 1161 CTCGAGTCATGGGCACTTATGGTTACGCTGCCCCCGAGTATGTAATGACCGGTCACTTGA 1220
|||| || ||||| || ||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 959 CTCGGGTTATGGGAACATATGGCTATGCTGCTCCCGAATATGTAATGACCGGTCACTTGA 1018
Query 1221 CATCAAAAAGCGACGTTTACAGTTTCGGTGTGGTTCTTCTCGAAATGCTGACTGGTAGAA 1280
||||||| ||||| || || ||||| || |||||||| || |||||||||||||| ||
Sbjct 1019 CATCAAAGAGCGATGTCTATAGTTTTGGGGTGGTTCTGCTGGAAATGCTGACTGGGCGAC 1078
Query 1281 GATCAATGGACAAAAATCGACCAAACGGTGAACACAACCTCGTTGAATGGGCGAGACCGC 1340
|||| ||||||||||| || ||||| ||||| |||||| | || |||||||| ||||| |
Sbjct 1079 GATCTATGGACAAAAACCGCCCAAATGGTGAGCACAACTTAGTGGAATGGGCAAGACCAC 1138
Query 1341 ATCTCCTGGACAAAAGAAGATTCTACCGGTTACTTGATCCGAGGCTGGAGGGTCATTTCT 1400
||||||| ||||||||||| || ||||||||||||||||||||||| ||||| |||||||
Sbjct 1139 ATCTCCTTGACAAAAGAAGGTTTTACCGGTTACTTGATCCGAGGCTTGAGGGCCATTTCT 1198
Query 1401 CAGTTAAAGGAGCACAAAAAGTGACTCAGCTTGCAGCACAATGCCTTAGCCGTGACTCCA 1460
|| | ||||| || ||||| |||||||||||||| ||||| || |||||||||||| |||
Sbjct 1199 CAATCAAAGGTGCTCAAAAGGTGACTCAGCTTGCTGCACAGTGTCTTAGCCGTGACCCCA 1258
Query 1461 AAATAAGACCCAAA-ATGAGTGAAGTGGTGGAAGTACTTAAGCCTCTCCCACACCTCAAG 1519
| || || || ||| |||||||| || || |||| |||||| || || || || |||||
Sbjct 1259 AGATTAGGCC-AAAGATGAGTGATGTTGTCGAAGCACTTAAACCACTTCCGCATCTCAAA 1317
Query 1520 GACATGGCTAGCGCTTCTTACTACTTCCAGACAATGCAAGCTGAACGTTTGAAAGCTGGT 1579
|||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1318 GACATGGCGAGCTCTTCTTACTACTTCCAGACAATGCAAGCGGAACGTTTGAAAAATGGG 1377
Query 1580 TCTGGTTCTGGT-TCTGGTCGT--G-G-ATTCGGGTCAAGAAACGGGCAAC--CA----G 1628
|| ||| | | | || || | | | ||| || |||||||||||||||| || |
Sbjct 1378 TCAGGT-C-GATCTCAGGGAGGAAGCGGATTTGGATCAAGAAACGGGCAACATCAACCCG 1435
Query 1629 TGTTTCGGACATTGTCTAGTCCTCATGGTCAAGC-TGGTTCGTCGCCTTATCGTCATCAG 1687
||||||| ||| |||||||||||||||||||| | |||||| ||||||||||| ||||||
Sbjct 1436 TGTTTCGAACACTGTCTAGTCCTCATGGTCAA-CATGGTTCTTCGCCTTATCGACATCAG 1494
Query 1688 ATTCCGTCTCCTAAGCCTAAAGGTGCAACTACTTAG 1723
||||| ||||| ||||||||||| |||||||| |||
Sbjct 1495 ATTCCTTCTCCAAAGCCTAAAGGAGCAACTACATAG 1530
> Ahg482986 jgi|Araly1|482986|fgenesh2_kg.4__2046__AT2G39660.1
Length=1767
Score = 76.8 bits (41), Expect = 5e-13
Identities = 229/316 (72%), Gaps = 28/316 (9%)
Strand=Plus/Plus
Query 650 AGAAATTTCAGACCTGAAAGCCTTCTCGGAGAAGGTGGCTTTGGTTGTGTCTTCAAAGGC 709
||||| |||||||| || || | |||||||||||||||||||||||||||| ||||||
Sbjct 446 AGAAACTTCAGACCAGATAGTGTGATCGGAGAAGGTGGCTTTGGTTGTGTCTTTAAAGGC 505
Query 710 TGGGTCGAGGAGAACGGAACTG-CTCCTGT-TAAGCCTGGCACTGGCCTTACTGT-T-GC 765
||| | || |||| | || |||| | ||| ||||| || || || | | | ||
Sbjct 506 TGGTTAGATGAGACCACT-CTCACTCC-GACTAAACCTGGAACCGGT-TTGGT-TATCGC 561
Query 766 CGTCAAAAC-CTTAAATCCT-GATGGCCTTCAGGGTCATAAAGAGTGGCTTG-CTGAGAT 822
||| |||| ||||| || || || |||| ||||| || ||||| | | |||||
Sbjct 562 CGTTAAAAAGCTTAA--CCAAGAAGGTTTTCAAGGTCACCGTGAATGGCT-GACAGAGAT 618
Query 823 TAATTATCTTGGT--AATCTTC-TCCATCCCAA-TCTTGTTAAACTGGT-GGGTTATTG- 876
||||| ||||| ||| | || | ||||| ||| || ||||| | |||| ||||
Sbjct 619 CAATTA-CTTGGGGCAAT-TGAGTC-A-CCCAAATCTAGTCAAACTAATCGGGT-ATTGC 673
Query 877 TATCGAAGATGATCAAAGGCTGCTTGTATATGAGTTTATGCCTCGAGGAAGT-TTGGAGA 935
| | || ||||| || | || ||||| || |||||||||| ||||||| ||| |||
Sbjct 674 T-TAGAGGATGAACACCGTCTTCTTGTCTACGAGTTTATGCAAAAAGGAAGTCTTG-AGA 731
Query 936 ATCACCTTTTCAGAAG 951
|||| || ||||||||
Sbjct 732 ATCATCTATTCAGAAG 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72980909420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5