BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01311.1
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902963 jgi|Araly1|902963|Al_scaffold_0003_91 1243 0.0
> Ahg902963 jgi|Araly1|902963|Al_scaffold_0003_91
Length=912
Score = 1243 bits (673), Expect = 0.0
Identities = 815/883 (92%), Gaps = 12/883 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATATTTAGAAAGGCAACGATTGTACGTCTCCGTAGCCACAACGACAAATACCTA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGATATTTAGAAAGGCAGCGATTGTACGTCTCCGTAGCCACAACGACAAATACCTA 60
Query 61 AGTGCCGATGAAGATCAAGAATCCGTTCATCAAGATCGTCGCGGCACAACAAAAAACACT 120
| |||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 61 GGCGCCGATGAAGATCAAGAATCCGTTCACCAAGATCGTCGCGGTACAACTAAAAACACC 120
Query 121 AGATGGACGGTTGAGATCGTACCTGGATCCAATGTGATCCGTCTTCAAAGCTGTTACGGC 180
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 121 AGATGGACGGTTGAGATCGTACCTGGATCCAATGTGATCCGTCTCCAAAGTTGTTACGGC 180
Query 181 AAATACCTTACCGCCACTAATATTCATTTCCTCCTTGGAGCCACCGGCGAAAAGGTACTT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 AAATACCTTACCGCCACTAATATTCATTTCCTCCTTGGAGCCACCGGTAAAAAGGTACTT 240
Query 241 CAAACTCTACCCGAAAAGTTGGATTCATCTGCGGAGTGGGAGCCGCTATCAGACGATGGT 300
||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 241 CAAACTCTACCGGGAAAGTTGGATTCATCTGCGGAATGGGAGCCGATATCAGACGATGGT 300
Query 301 GTACACGTACGGTTCAAGAGTCGCTACGGACAATATCTGAGGGCAAACAAAGGTGTACCA 360
|||||||||||||||||||||| |||||||||||||| ||||| ||||| || ||||||
Sbjct 301 ATACACGTACGGTTCAAGAGTCGGTACGGACAATATCTAAGGGCGAACAAGGGAGTACCA 360
Query 361 CCGTGGAGAAACTCTATCACACACGATATTCCTAGTCGTACGGTCACACAAGATTGGGTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 CCGTGGAGAAACTCTATCACACACGATATTCCTAGTCGTACGGTCACACAAGATTGGATC 420
Query 421 ATGTGGACTGTTGACGTTCTTCAGATTCGAGTTATCAAAGATGATGCAG-AGTCTACCCA 479
||||||| |||||| ||||| ||||||||||||| |||||||||||||| | ||||||||
Sbjct 421 ATGTGGAGTGTTGATGTTCTCCAGATTCGAGTTACCAAAGATGATGCAGGA-TCTACCCA 479
Query 480 CAGTTCTTCCACTTTTTCACGGATTGAGTCAGATGATTCGTTTATTGTGAGTTTACCACT 539
|||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 480 TAGTTCTTCCACTTTTTCACGGATTGAGTCAGATGATTCATTTACTGTGAGTTTGCCACT 539
Query 540 CAAGTCCGAAGGAAGGCTAATATATTACGAGACCGGAGATGATAGTGGGAACATAAATAA 599
|| ||||||||||| |||||| ||||||||| |||||||||| ||||||||||||||||
Sbjct 540 GAAATCCGAAGGAAGACTAATAAATTACGAGATCGGAGATGATTGTGGGAACATAAATAA 599
Query 600 GGAAATAGGAGAAAAATCATTGATATTCCATGGAAGCGAGTTGATAGAACTAAAGAAGA- 658
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGAAATGGGAGAAAAATCATTGATATTCCATGGAAGCGAGTTGATAGAACTAAAGAAGAG 659
Query 659 AGCTTGAGGAAGAAACAGAGATGGAAGATGTTATGATTTGGTGTAGAAATCCTTTGAACG 718
| |||||||||||||||||||||||||| |||||||| || |||||||||||| |||| |
Sbjct 660 A-CTTGAGGAAGAAACAGAGATGGAAGAAGTTATGATCTGCTGTAGAAATCCTCTGAATG 718
Query 719 AAAAGCTTTGTCCTCTTCAATTGCATCTTCCTCCTAACAACGCAACTATGCACATCATCG 778
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 719 AAAAGCTTTGTCCTCTTCAATTGCATCTTCCTCCAAACAACGCAACTATGCATATCATCG 778
Query 779 TCTTTCCTTCTTCTTGCGGTACTAAACTTACCTCCTTCTTCAT-T-GTTACCA-TTATC- 834
|||| |||||||||| |||||||||||| ||||||||| || | |||| || |||||
Sbjct 779 TCTTCCCTTCTTCTTTCGGTACTAAACTCACCTCCTTCAAAATATTGTTAGCAGTTATCG 838
Query 835 TATAATCAAAATA-T-TGTTTAT-GCATTCCTAAtttttttCA 874
| |||| | ||| | ||||||| ||||| ||||||| |||||
Sbjct 839 T-TAATTATAATTGTATGTTTATAGCATTTCTAATTTCTTTCA 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32556971118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5