BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01320.1
Length=4615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477381 jgi|Araly1|477381|fgenesh2_kg.3__82__AT3G01320.1 6517 0.0
Ahg488346 jgi|Araly1|488346|fgenesh2_kg.6__1480__AT5G15020.1 1951 0.0
> Ahg477381 jgi|Araly1|477381|fgenesh2_kg.3__82__AT3G01320.1
Length=4580
Score = 6517 bits (3529), Expect = 0.0
Identities = 4266/4608 (93%), Gaps = 105/4608 (2%)
Strand=Plus/Plus
Query 38 AGGGAATTTTGATCCTCTGCTTCGTTAATTAACTTGT-GATGAAGCGGATAAGAGATGAT 96
||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||
Sbjct 22 AGGGAATTTTGATCCTCTGCTACGTTAATTAACTT-TAGATGAAGCGGATAAGAGATGAT 80
Query 97 GTATATGCCTCTGGGTCTCAATTTAGACGTCCTCTTGGTTCTTCTCGAGGCCAATTATGT 156
|| |||||||||||||||| | | | | ||||||||||| ||||||| |
Sbjct 81 GTCTATGCCTCTGGGTCTC----T-G--G----C----TTCTTCTCGAGCCCAATTACAT 125
Query 157 GGACAATCTCCGGTCCACGGCAGTGGTGACACCGAA-GAAGAAGAAGAA-GGAGGGAGCC 214
|||||||||||||||| ||||||||||||||||||| || || | |||| || || |
Sbjct 126 GGACAATCTCCGGTCCCCGGCAGTGGTGACACCGAACGAGGAGGGAGAATGGCTGGTG-G 184
Query 215 GGAGAGT-C-TCTCAGAAATTGACAACCAATGATGCGTTGTCGTACCTGAGGGAAGTAAA 272
||| | | | | |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 185 GGAAATTACTTGTCAGAAATTGACAACCAATGATGCCTTGTCGTACCTGAGGGAAGTAAA 244
Query 273 AGAGATGTTTCAAGATCAACGCGAGAAATATGACAGGTTCCTCGAGGTTATGAAAGATTT 332
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGAGATGTTTCAAGATCAACGGGAGAAATATGACAGGTTCCTCGAGGTTATGAAAGATTT 304
Query 333 TAAGGCTCAAAGAACCGACACAGGCGGTGTGATCGCAAGAGTTAAGGAATTGTTTAAGGG 392
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 305 TAAGGCTCAAAGAACCGACACAGGCGGTGTCATTGCAAGAGTTAAGGAATTGTTTAAGGG 364
Query 393 ACATAATAATTTGATTTATGGATTCAACACCTTTTTGCCTAAGGGATATGAAATTACGCT 452
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 365 ACATAATAATTTGATATATGGATTCAACACCTTTTTGCCTAAGGGATATGAAATAACGCT 424
Query 453 TATT---GAGGAAGACGACGCTCTGCCAAAGAAGACTGTTGAATTCGAACAAGCCATCAA 509
|||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 425 TATTGAGGAGGAAGACCATGCTCTGCCAAAGAAGACTGTTGAATTCGAAGAAGCCATCAA 484
Query 510 TTTTGTGAATAAAATTAAGATGCGATTCAAGCACGATGAACATGTCTATAAATCTTTCTT 569
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 485 TTTTGTCAATAAAATTAAGAAGCGATTCAAGCACGATGAACATGTCTATAAATCTTTCTT 544
Query 570 GGAAATCTTGAATATGTACCGAAAGGAGAACAAGGAAATTAAAGAGGTGTACAACGAGGT 629
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 545 GGAAATCTTGAATATGTACCGCAAGGAGAACAAGGAAATTAGTGAGGTGTACAACGAGGT 604
Query 630 ATCTATTCTTTTTCAAGGCCACTTGGATTTGCTTGAACAGTTTACTAGGTTTTTGCCAGC 689
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 605 ATCTATTCTTTTTGAAGGCCACTTGGATTTGCTTGAAGAGTTTACTAGGTTTCTGCCAGC 664
Query 690 GTCTTTGCCATCTCATTCAGCAGCGCAGCATAGCCGGAGTCAGGCTCAACAGTACAGCGA 749
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 665 GTCTTTGCCCTCTCATTCAGCAGCGCAGCATAGCCGGAGTCAGGCTCAACGGTACAACTA 724
Query 750 CCGAGGATCAGACCCTCCTCTACTTCATCAAATGCAAGTGGAAAAGGAACGCCGACGAGA 809
| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 725 CGGAGGATCAGGCCCTCCTCTAATTCATCAAATGCAAGTGGAAAAGGAACGCCGACGAGA 784
Query 810 AAGGGCTGTTGC-TCTCCGCGGTGATTATAGTGTTGAACGTTATGACCTTAATGATGATA 868
|||||||||||| || |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 785 AAGGGCTGTTGCTTC-CCGCGGGGATTATAATGTTGAACGTTATGACCTTAATGATGATA 843
Query 869 AAACGATGGTGAAGATTCAAAGAGAGCAGCGGAAGCGCCTTGATAAGGAGAACAGGGCAA 928
|||| ||||||||||| |||||||||||||||||||| ||||||||||| | |||||||
Sbjct 844 AAACAATGGTGAAGATGCAAAGAGAGCAGCGGAAGCGTTTTGATAAGGAGGATAGGGCAA 903
Query 929 GGAGAGGCCGTGATTTGGACGATAGAGAAGCAG-GTCAAGATAACCTACACCATTTTCCA 987
|||| ||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 904 GGAGGGGCTGTGATTTGGACGATAGAGAAGCAGAG-CAAGATAACCTACACCATTTTCCA 962
Query 988 GAGAAAAGAAAGTCGTCCAGAAGAGCTGAAGCTCTTGAAGCATATTCTGGTTCTGCTTCA 1047
|| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 963 GAAAAAAGGAAGTCGTCCAGAAGAGCTGAAGGTCTTGAAGCATATTCTGGTTCTGCTTCA 1022
Query 1048 CATTCTGAGAAAGACAATTTGAAAAGTATGTACAAACAAGCATTCGTTTTCTGTGAGAAA 1107
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1023 CATTCTGAGAAAGACAATTTGAAAAGTATGTACAACCAAGCATTCGTTTTCTGTGAGAAA 1082
Query 1108 GTCAAGGATAGACTATGCAGCCAAGATGATTATCAGACATTCTTGAAGTGCCTCAATATT 1167
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GTCAAGGAGCGACTATGCAGCCAAGATGATTATCAGACATTCTTGAAGTGCCTCAATATT 1142
Query 1168 TTTAGCAATGGAATAATCCAAAGGAAGGATCTGCAAAACTTGGTTTCTGATCTTCTTGGG 1227
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1143 TTTAGCAATGGAATAATCCAAAGGAATGATCTGCAAAATTTGGTTTCTGATCTTCTTGGG 1202
Query 1228 AAATTTCCTGATCTGATGGATGAGTTCAACCAGTTCTTCGAGCGGTGTGAGAGTATTACT 1287
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1203 AAATTTCCTGATCTAATGGATGAGTTCAACCAGTTCTTCGAGCGGTGTGAGAGTA-T--T 1259
Query 1288 GATGGATTTCAGCGTCTTGCTGGTGTTATGAGCAAAAAATTATTTAGCAGCGAAGAACAG 1347
||||||||||| | ||||||||||||||||||||||||| |||||||| | |||| |
Sbjct 1260 GATGGATTTCAACACCTTGCTGGTGTTATGAGCAAAAAATCATTTAGCA--G-TGAACTG 1316
Query 1348 TTATCCAGGCCAATGAAGGTGGAAGAGAAAGAAAGTGAACACAAGCCTGAACTCGAGGCT 1407
|||||||| ||| |||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1317 TTATCCAGACCAGTGAAGGTGGAAGAGAAAGAAAGTGAACATAAACCTGACCTCGAGGCT 1376
Query 1408 GTGAAGGAAACTGAGCAATGCAAGAAGGAGTACATGGGAAAATCTATTCAAGAGCTCGAT 1467
|| |||||||| ||||||| |||| ||||||||||||||||||||||||| ||||| |||
Sbjct 1377 GTTAAGGAAACCGAGCAATACAAGGAGGAGTACATGGGAAAATCTATTCATGAGCTTGAT 1436
Query 1468 CTCTCTGATTGCGAGTGTTGCACTCCTAGCTACCGGCTTCTGCCTGCGGATTATCCGATA 1527
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1437 CTCTCTGATTGCGAGTGTTGCACTCCTAGCTACCGGCTTCTCCCTGCTGATTATCCGATA 1496
Query 1528 CCAATTGCGAGTCAGAGATCGGAGCTAGGAGCTGAGGTTTTAAATGATCATTGGGTATCT 1587
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1497 CCAACTGCGAGTCAGAGATCGGAGCTAGGAGCTGAGGTTTTAAATGATCATTGGGTGTCT 1556
Query 1588 GTCACTTCCGGAAGTGAAGATTATTCTTTTAAGCACATGCGCAGAAACCAATATGAAGAG 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GTCACTTCCGGAAGTGAAGATTATTCTTTTAAGCACATGCGCAGAAACCAATATGAAGAG 1616
Query 1648 AGCTTGTTCAGATGCGAAGATGATAGATTTGAGTTGGACATGTTGCTGGAATCTGTGAGC 1707
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1617 AGCTTGTTCAGATGCGAAGATGATAGATTTGAGTTGGATATGTTGCTGGAATCTGTGAGC 1676
Query 1708 TCTGCGGCCAGAAGTGCAGAAAGTTTGTTGAACATCATCACAGAGAAGAAAATAAGTTTT 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TCTGCGGCCAGAAGTGCAGAAAGTTTGTTGAACATCATCACAGAGAAGAAAATAAGTTTT 1736
Query 1768 TCTGGCTCCTTCAGGATCGAAGACCATTTTACGGCCCTAAATTTAAGGTGTATTGAGCGA 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1737 TCTGGCTCCTTCAGGATCGAAGACCATTTTACGGCCCTAAATTTAAGGTGTATTGAGAGA 1796
Query 1828 CTTTATGGCGACCATGGTCTTGACGTGATAGACATATTAAATAAGAATCCAGCCACTGCA 1887
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1797 CTTTATGGCGACCATGGTCTTGACGTGATAGACATATTACATAAGAATTTAGCCACTGCA 1856
Query 1888 CTTCCTGTAATCCTAACTCGTTTAAAGCAGAAACAAGGTGAATGGAAGAAATGCCGTGAC 1947
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1857 CTTCCTGTAATCCTAACTCGTTTAAAGCAGAAACAAGATGAATGGAAGAAATGCCGTGAA 1916
Query 1948 GATTTTGATAAGGTCTGGGCGAACGTATATGCAAAAAACCATTACAAGTCACTTGATCAC 2007
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1917 GATTTTGATAAGGTCTGGGCGAACGTATATGCGAAAAACCATTACAAGTCACTTGATCAC 1976
Query 2008 CGCAGCTTCTACTTCAAGCAACAAGATTCAAAGAACTTGAGTGCAAAATCATTGTTGGCT 2067
||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1977 CGCAGCTTCTACTTCAAACAACAAGATTCAAAGAACTTGAATGCAAAATCATTGGTGGCT 2036
Query 2068 GAAATTAAGGAGCTGAAAGAGAAGTCTCAGAATGATGATGATGTTCTGTTGTCTATTTCT 2127
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2037 GAAATTAAGGAGCTGAAAGCGAAGTCTCAGAATGAGGATGATGTTCTGTTGTCTATTTCT 2096
Query 2128 GCTGGTTACAGACAACCTATAAATCCTAATCTTGAATATGAGTATTTGAACAGAGCTATT 2187
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2097 GCTGGTTACAGACAACCCATAAATCCTAATCTTGAATATGAGTATTTCAACAGAGCTATT 2156
Query 2188 CATGAAGACATGTTCAAAGTAGTCCAGTTTTCATGTGAGGAGTTATGTTCTACAAAAGAA 2247
||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2157 CATGAAGACCTGTACAAACTAGTCCAGTTTTCATGTGAGGAGTTATGTTCTACAAAGGAA 2216
Query 2248 CAGCTCAGTAAAGTTCTGAGGCTTTGGGAAAATTTCCTGGAGGCAGTGCTGGGTGTTCCT 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 CAGCTCAGTAAAGTTCTGAGGCTTTGGGAAAATTTCCTGGAGGCAGTGCTGGGTGTTCCT 2276
Query 2308 CCCAGGGCCAAGGGCACAGATCTTGTTGAAGATGTTGTAATAAACCCCAAGACTCTCGAT 2367
|||||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2277 TCCAGGGACAAGGGCGCAGATCTTGTTGAAGATGTTGTGATAAAACCCAAGACTCTCGAT 2336
Query 2368 GTGAATCACAGCACATCTCCTAACGGGGAGGCTGCTGTGAGTTCTGGAGGAGACACAGCA 2427
||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct 2337 GTGAATCACAGTACATCTACTAACGGGGAGTCTGCTGTGAGTTCTGGAGCAGACACAGCA 2396
Query 2428 AGGTTGGCTTCTAGGAAACTTAAATCTGCTGCCAATGGAGATGAGAATTCTTCATCTGGG 2487
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2397 AGGTTGGCTTCTAGGAAACTAAAATCTGCTGCCAATGGAGATGAGAATGCTTCATCTGGG 2456
Query 2488 ACA-TTCAAACATGG-G--ATAGGTTTGTTAAATAAAGATTCGACAGGGAAAGAAAATCT 2543
|| || |||||||| | ||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 2457 CCAATT-AAACATGGTGGCATAGGTTTGGTAAATAAGGATTCGACAGGAAAAGAAAATCT 2515
Query 2544 TGAAGATGTTGAAATAGCTAACAGAGATGGTGTTGCCTGCTCTGCTGTGAAACCTCAGAA 2603
| |||||| ||| | ||| ||||||||||||| |||| |||||||||||||| |||||
Sbjct 2516 TAAAGATGCTGATACAGCCAACAGAGATGGTGACACCTGTTCTGCTGTGAAACCCCAGAA 2575
Query 2604 AGAACAAGAAACTGGAAATGAAGCCGAGAAAAG-GTTTGGAAAACCTATCCCAATGGATA 2662
||||| ||| ||||||||||||||||| ||||| ||| | ||| |||||||| |||||||
Sbjct 2576 AGAACGAGAGACTGGAAATGAAGCCGATAAAAGAGTT-GTAAAGCCTATCCCGATGGATA 2634
Query 2663 TTAGCGAAAGAGCAGCCATCTCGAGTATATCAATCCCAAGTGG-GGCAGAAAACAATCAT 2721
|| | ||||||||||||| ||||||| |||||||||||||||| || |||||||| ||||
Sbjct 2635 TTTGTGAAAGAGCAGCCACCTCGAGTTTATCAATCCCAAGTGGAGG-AGAAAACAGTCAT 2693
Query 2722 TGTGTAGTAGGCAAGGAAGTTTTGCCAGGTGCACATGAGATTCAAGCCAAACCAAGCGAC 2781
||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||| ||
Sbjct 2694 TGTGTAGTAGGAAAGGAAGATTTGGCAGGTTCACATGAGATTCAAGCCAAACCAAGCAAC 2753
Query 2782 ACCCTCACTGATATTCATCATGATGTAGATAGCATTGAAACTGTTCATTCGACTCAGGGA 2841
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2754 ACCTTCACTGATATTCATCATGATGTAGATAGCATTGAAACGGTTCATTCGACTCAGGGA 2813
Query 2842 GGTGATGTTGGCAATTCGATAGTTTTGGCAAATGGATTAAGGTCAGATTCTTCTAAAGGT 2901
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2814 GGTGATGTTGGCAAGTCGATAGTTTTGGCAAATGGATTAAGGTCAGATTCTTCTAAAGGT 2873
Query 2902 ACTAGGAATTCTGATGATCCCGAAGGTCCCTCCAGAAATGAGAAAGAGGAAGGTGAACTG 2961
||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||||||
Sbjct 2874 ACTAGGAATTCTGATGAACCCGAAGGTTCCTCCAGAATTGAGAAGGAGGAAGGTGAACTC 2933
Query 2962 TCACCTAATGGTGATTTTGAAGACAACTTTGGTGTTTACAAAGATCATGGGGTGAAGTCC 3021
||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||||
Sbjct 2934 TCACCTAATGGTGATTTTGAAGACAACTTTGGTGTGTACGAAGATCTTGAGGTGAAGTCC 2993
Query 3022 ACATCCAAACCAGAGAATTCAGCAGAGGCTGAAGTAGAGGCAGATGCTGAAGTAGAGAAT 3081
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 2994 ACATCCAAACCAGAGAATTCAGCAGATGCTGAAGTAGAGGCAGATGCTGAAATAGAGAAT 3053
Query 3082 GAGGACGATGCTGACGATGTTGATAGTGAAAATGCTTCCGAGG------------CATCT 3129
||||| ||| ||||||||| |||| |||||||||||||||||| |||||
Sbjct 3054 GAGGATGATACTGACGATGATGATGGTGAAAATGCTTCCGAGGGTGGTGAGGATGCATCT 3113
Query 3130 GGAACTGAATCTGGTGGCGACGTATGTTCTCAGGACGAAGATAGAGAGGAGGAGAATGGT 3189
|||||||||||||||||| | | |||||| ||||||||| | ||||||||||||||||||
Sbjct 3114 GGAACTGAATCTGGTGGCAATGAATGTTCCCAGGACGAAAACAGAGAGGAGGAGAATGGT 3173
Query 3190 GAGCATGATGAGATCGATGGTAAAGCTGAGAGTGAAGGAGAAGCGGAGGGAATGGATCCA 3249
||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3174 GAGGATGATGAGATTGATGGTAAAGCTGAGAGTGAAGGGGAAGCGGAGGGAATGGATCCA 3233
Query 3250 CATCTCTTAGAAGGAGAAAGTGAGCTGCTTCCACAGTCAGAACGTGTTCTCTTATCCGTC 3309
||||||||||||| ||| |||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 3234 CATCTCTTAGAAGAAGACAGTGAGTTGCTTCCTCAGTCAGAACATGTTCTCTTATCCGTC 3293
Query 3310 AGACCCCTTTCAAAGCATGTCGCAGCAGTTTTATGCGATGAGAGAACAAAAGATCTCCAA 3369
|||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| |
Sbjct 3294 AGACCCCTTTCAAAGCATGTAACAGCAGTTTTACGCGATGAGAGGACAAAAGATCTCCGA 3353
Query 3370 GTTTTCTATGGGAATGACGACTTTTATGTTCTTTTTAGGCTTCACCAAATCCTGTACGAG 3429
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 3354 GTTTTCTATGGGAATGACGATTTTTATGTTCTTTTTAGGCTTCACCAAATCCTGTATGAG 3413
Query 3430 AGAATTTTGTATGCAAAAAGGAATTGCTCAGGCGGTGAACTGAAATCGAAAAACTTAAAG 3489
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 3414 AGAATTTTGTCTGCAAAAAGGAATTGTTCAGGCGGTGAACTGAAATCGAAAAACTCAAAG 3473
Query 3490 GATACCAATGCCGGAGATCCTTATGCGAGGTTTATGAGGGTTTTGTATGGTTTGCTAGAT 3549
||||||||| || |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 3474 GATACCAATTCCCAAGATCCTTATGCGAGGTTTATGAGGGTTTTGTATCGTTTGCTTGAT 3533
Query 3550 GGATCAGCTGAAAATACCAAGTTTGAGGATGAGTGCAGAGCTATAATTGGAAACCAATCA 3609
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 3534 GGATCAGCTGAAAATACCAAGTTTGAGGATGAGTGCAGAGCTACAATTGGAAATCAATCA 3593
Query 3610 TATGTGTTATTCACGTTGGACAAACTGATTTACAGATTGGTTAAGCAGCTTCAAGCTATT 3669
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 3594 TATGTGTTATTCACGTTGGACAAACTGATATACAAATTGGTTAAGCAGCTTCAAGCTATT 3653
Query 3670 GTAGCCGATGAAATGGACAACAAGCTGCTTCAGTTGTATGAGTATGAGAAATCCCGGAAA 3729
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3654 GTAGCTGATGAAATGGACAACAAGCTACTTCAGTTGTATGAGTATGAGAAATCCCGGAAA 3713
Query 3730 -CCAGGAAGGGTTATCGACTCAGTGTATTATGAAAATGTTAGGGTCCTCGTTCACGAGGA 3788
|| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 3714 TCC-GGAAGGGTTATCGACTCAGTGTATTATGAAAATGCCAGGGTCCTCCTTCACGAGGA 3772
Query 3789 AAATATTTACCGGTTGGAATGTTCATCCTTGCCTTCACGTTTATCTATCCAGCTTATGGA 3848
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3773 AAATATTTACCGGTTGGAATGTTCATCCTTGCCATCACGTTTATCTATCCAGCTTATGGA 3832
Query 3849 TAACATAATCGAGAAGCCAGAAGCATATGCAGTTTCTATGGATCCCACATTTGCAAGTTA 3908
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3833 TAACATAATAGAGAAGCCAGAAGCATATGCAGTTTCTATAGATCCCACATTTGCAAGTTA 3892
Query 3909 TATGCAAACTGAGTTGCTTTCCGTCTCATCAGGAAAGAAAGAGGAGGGACATGACATTGT 3968
|||||||| ||||| |||||| ||| ||||||||||||||| ||||||||||||||||
Sbjct 3893 TATGCAAAAGGAGTTTCTTTCCACCTCGTCAGGAAAGAAAGAGCAGGGACATGACATTGT 3952
Query 3969 ATTACAAAGGAACCT-C----A--C-C-GGGTTGTATGATCT--C-----T--GTAAAGC 4010
||||||||||||||| | | | | |||||| ||||||| | | |||||||
Sbjct 3953 ATTACAAAGGAACCTGCGTCCATACACCGGGTTGCATGATCTTGCAGCACTCTGTAAAGC 4012
Query 4011 TATGGAAGGTGTCGAAGTAGTAAATGGCTTGGAATGCAAGATGTCTTGCTCTTCTTACAA 4070
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4013 TATGGAAGGTGTCGAAGTAGTAAATGGCTTGGAATGCAAGATGTCTTGCTCTTCGTACAA 4072
Query 4071 GATCGCGTACGTATTGGACACAGAGGATTACTTCCACAGGAAGAAGAAGAAAAAGAAGAC 4130
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4073 GATCTCATACGTATTGGACACAGAGGATTACTTCCACAGGAAGAAGAAGAAAAAGAAGAC 4132
Query 4131 TGAACAGTTATGGCAACGTAACAAGGTGAGAGTAGAAAGGTTCCATAGGTTTCTCTCAGC 4190
|||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 4133 TGAACAGTCACCGCAACGTAACAAAGTTAGAGTAGAAAGGTTCCATAGGTTTCTCTCAGC 4192
Query 4191 TTAAAGATGACCACAACAAAGTTTCCTCTTGGGTTTTCTTCTTTCCTTCAAACCAACAAC 4250
||||||||| ||||||||||||||||||||||| |||| || | | || |
Sbjct 4193 TTAAAGATGGCCACAACAAAGTTTCCTCTTGGGGTTTC-----------AA-C-A-CA-C 4237
Query 4251 ACACAAGAAAAAGGTAAAACTGACAAAGTCGCACAAGTAAAGTTCTCTGCAACAATTCCC 4310
| | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 4238 A-A---GAAAAAGGTAAAACTGACAAAGTTGCACAAGTAAAGTTCTCTGCAACAAGTCCC 4293
Query 4311 AACTTTGGTCTTCA-AGTTTCTTACTATGCTGATTATAAGATGAGATATAGAGAGATGCA 4369
||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4294 AACTTTGGTTTTCAGA-TTTCTTACTATGCTGATTATAAGATGAGATATAGAGAGATGCA 4352
Query 4370 CAAAG-G-A-A-CAAAACCATAAGAAGAACAATGGTGGTTTAGAGTTACTGTGTGTATCT 4425
||||| | | | ||||||||||||||||||||||||||||||| ||| || |||||||||
Sbjct 4353 CAAAGTGGAGAACAAAACCATAAGAAGAACAATGGTGGTTTAGTGTTTCTATGTGTATCT 4412
Query 4426 TTAGGTTTCAAGTGCCAAGTCTGTTAGTGTTACATGTAGTGTGT--GTCTGTGCTCT-TT 4482
|||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || ||
Sbjct 4413 TTAGGTTTCAAGTGTCAAGTCTGTTAGTGTTAAATGTAGTGTGTATGTGTGTGCACTCTT 4472
Query 4483 -AGGAGAATGTTGTTGTAAATATGGGAAAGCACTTGAAGATGCCTTGGTTAATAGATAGA 4541
|||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||| |
Sbjct 4473 GAGGAGATTGTTGTTGTAAATTTGGGAAAGCCCTTGAAAATGCCTTGGTTAATAGATTTA 4532
Query 4542 TAGGCCCAAAAGAAAAATTATTATTATATGCTTCAAATTTCAAGATTA 4589
|| ||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 4533 TAAGCCCAAAGGAAAAATTATTTTTATATGCTTCCAATTTCAAGATTA 4580
> Ahg488346 jgi|Araly1|488346|fgenesh2_kg.6__1480__AT5G15020.1
Length=4684
Score = 1951 bits (1056), Expect = 0.0
Identities = 2114/2612 (81%), Gaps = 123/2612 (5%)
Strand=Plus/Plus
Query 76 ATGAAGCGGATAAGAGATGATGTATATGCCTCTGGGTCTCAATTTAGACGTCCTCTT-GG 134
|||||||| || || |||||| | || || ||||||||||||||| ||||||| || ||
Sbjct 310 ATGAAGCGAATTAGGGATGATATTTACGCAACTGGGTCTCAATTTAAACGTCCT-TTGGG 368
Query 135 TTCTTCTCGAGGCCAATTATGTGGACAATCTCCGGTCCAC-GGCAGTGGTGACACC-GAA 192
|||||||| ||| ||| || ||| ||||| || ||| | || | |||| ||| ||
Sbjct 369 GTCTTCTCGTGGCGAATCATATGGGCAATCACCAATCC-CTGGAAACGGTGGTACCGGAG 427
Query 193 GAAGAAGAAGAAG-GAGGGAGCCGGAGAGT--CTCTCAGAAA-TTGACAACCAATGATGC 248
| | || | | || || | ||| | | | |||| ||| ||||| ||| |||||||
Sbjct 428 GTGGGAGCATTGGTGACGG-G--GGA-ATTAACACTCA-AAAGTTGACTACCGATGATGC 482
Query 249 GTTGTCGTACCTGAGGGAAGTAAAAGAGATGTTTCAAGATCAACGCGAGAAATATGACAG 308
||| | ||| | | ||||||||| |||||||||||||||||| | || |||||||| |
Sbjct 483 TTTGACCTACTTAAAGGAAGTAAAGGAGATGTTTCAAGATCAAAGGGATAAATATGATAT 542
Query 309 GTTCCTCGAGGTTATGAAAGATTTTAAGGCTCAAAGAACCGACACAGGC-GGTGTGATCG 367
|||||| |||||||||||||| |||||||| ||| | | ||| ||| || ||||||||
Sbjct 543 GTTCCTTGAGGTTATGAAAGACTTTAAGGCACAATGGATCGATACA-GCTGGTGTGATTT 601
Query 368 CAAGAGTTAAGGAATTGTTTAAGGGACATAATAATTTGATTTAT-GGATTCAACACCTTT 426
|| |||| ||| | |||||||||| ||||| |||||||||| | || || |||||||||
Sbjct 602 CACGAGTGAAGCAGCTGTTTAAGGGGCATAACAATTTGATTT-TCGGGTTTAACACCTTT 660
Query 427 TTGCCTAAGGGATATGAAATTACGCTTATTGAGGAAGACGACGCTCTGCCAAAGAAGACT 486
||||||||||| | |||||| |||| |||| ||||| || |||| |||||||| |||
Sbjct 661 TTGCCTAAGGGGTTTGAAATAACGC---TTGATGAAGAAGAAGCTCCACCAAAGAAAACT 717
Query 487 GTTGAATTCGAACAAGCCATCAA-TTTTGTGAATAAAATTAAGATGCGATTCAAGCACGA 545
||| |||| ||| ||||||| || ||||| ||||||||||||| || ||| |||||||
Sbjct 718 GTTAAATTTGAAGAAGCCAT-AAGCTTTGTTAATAAAATTAAGACACGGTTCCAGCACGA 776
Query 546 TGAACATGTCTATAAATCTTTCTTGGAAATCTTGAATATGTACCGAAAGGAGAACAAGGA 605
||||| ||||||||| |||||| |||||||||| |||||||| || ||||| || |||||
Sbjct 777 TGAACTTGTCTATAAGTCTTTCCTGGAAATCTTAAATATGTATCGGAAGGATAATAAGGA 836
Query 606 AATTAAAGAGGTGTACAACGAGGTATCTATTCTTTTTCAAGG-CCACTTGGATTTGCTTG 664
|| | ||||| ||||| |||||||||| ||||||| ||| ||||| |||||||||||
Sbjct 837 CATCACTGAGGTTTACAATGAGGTATCTACTCTTTTT-GAGGACCACTCGGATTTGCTTG 895
Query 665 AACAGTTTACTAGGTTTTTGCCAG-CGTCTTTGCCATCTCATTCAGCAGCGCAGCATAGC 723
|| |||| ||||||||||| || | | || ||| | ||||| ||| ||| ||| || |
Sbjct 896 AAGAGTTCACTAGGTTTTTACCGGAC-TCGTTGGCGCCTCATACAGAAGCCCAG-TTA-C 952
Query 724 --CGGAGTCAGGCTCAACAGTACAG-CGACCGAGGATCAGACCCTCCTCTACTTCATCAA 780
|||||||| || |||| ||| | ||||||||||||| ||||||||| | | || |
Sbjct 953 TTCGGAGTCAAGCCCAACGGTA-TGATGACCGAGGATCAGGCCCTCCTCTTGTACGTCGA 1011
Query 781 ATG-CAAGTGGAAAAGGAACGCCGACGAGAAAGGGCTGTTGC-TCTCCGCGGTGA---T- 834
||| | |||| ||||| ||||||||||||||| ||||||| ||| || ||||| |
Sbjct 1012 ATGTTTA-TGGAGAAGGATCGCCGACGAGAAAGGACTGTTGCTTCT-CGGGGTGACCGTG 1069
Query 835 -T-ATAGTGTTGAACGTTATGACCTTAATGATGATAAAACGATGGTGAAGATTCAAAGAG 892
| |||||||||| |||| ||||||||||||||||||| | ||||| ||||| || ||||
Sbjct 1070 ATCATAGTGTTGACCGTTCTGACCTTAATGATGATAAATCAATGGTTAAGATGCACAGAG 1129
Query 893 AGCAGCGGAAGCGCCTTGATAAGGAGAACAGGGCAAGGAGAGGCCGTGATTTGGACGATA 952
| ||| |||| || |||||||||| || || | ||||||| ||||||||||||| |||
Sbjct 1130 ATCAGAGGAAACGTGTTGATAAGGATAATAGAGAAAGGAGAAGCCGTGATTTGGAAGATG 1189
Query 953 GAGAAGCAG-GTCAAGATAACCTACACCA-TTTTCCAGAGAAAAGAAAGTCGTCCAGAAG 1010
||||||||| | ||||||||| | || || |||| |||||||||| ||||| || |||||
Sbjct 1190 GAGAAGCAGAG-CAAGATAACTTGCAACACTTTT-CAGAGAAAAGGAAGTCATCGAGAAG 1247
Query 1011 AGCT-GA-AGCTCTTGAAGCATATTCTGGTTCTGCTTCACATTCTGAGAAAGACAATTTG 1068
| | || | | ||||||| || |||||| |||||||||||||||||||| ||||| |
Sbjct 1248 A-ATGGAGGGGT-TTGAAGCTTACTCTGGTCCTGCTTCACATTCTGAGAAAAACAATCTA 1305
Query 1069 AAAAGTATGTACAAACAAGCATTCGT-TTTCTGTGAGAAAGTCAAGGATAGACTATGCAG 1127
|||||||||||||| |||||||| | ||| ||||||||||| ||||| ||| |||||||
Sbjct 1306 AAAAGTATGTACAACCAAGCATTTATGTTT-TGTGAGAAAGTTAAGGAGAGATTATGCAG 1364
Query 1128 CCAAGATGATTATC-AGACATTCTTGAAGTGCCTCAATATTTTTAGCAATGGAATAATCC 1186
|||||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1365 CCAAGATGATTATCAAG-CATTCTTGAAGTGTCTCAATATTTTTAGCAATGGAATTATCC 1423
Query 1187 AAAGGAAGGATCTGCAAAACTTGGTTTCTGATCTTCTTGGGAAATTTCCTGATCTGATGG 1246
||||||| |||||||| || |||||||| ||| | ||||| ||||| |||||||| ||||
Sbjct 1424 AAAGGAAAGATCTGCAGAATTTGGTTTCCGATGTGCTTGGAAAATTCCCTGATCTCATGG 1483
Query 1247 ATGAGTTCAACCAGTTCTTCGAGCGGTGTGAGAGTATTACTGATGGATTT-CAGCGTCTT 1305
|||||||||| |||||||||||||| |||||||||| | |||||| ||| |||| ||
Sbjct 1484 ATGAGTTCAATCAGTTCTTCGAGCGTTGTGAGAGTA-T--TGATGG-TTTCCAGCACCTC 1539
Query 1306 GCTGGTGTTATGAGCAAAAAATTATTTAGCAGCGAAGAACAGTTATCCAGGCCAATGAAG 1365
|||||||||||||||||||||| | |||| || |||||| | ||||| || |||| |||
Sbjct 1540 GCTGGTGTTATGAGCAAAAAATCACTTAGTAGTGAAGAAAATTTATCTAGATCAATTAAG 1599
Query 1366 GTGGAAGAGAAAGAAAGTGAACACAAGCCTGAACTCGAGGCTG-TGAAGGAAACTGAGCA 1424
| ||| || |||||||| |||||||| | ||| || ||||||| | ||||||| ||||
Sbjct 1600 GGGGAGGAAAAAGAAAGAGAACACAAACGTGACCTTGAGGCTGCT-AAGGAAAAAGAGCG 1658
Query 1425 ATGCAAGAAGGAGTACATGGGAAAATCTATTCAAGAGCTCGATCTCTCTGATTGCGAGTG 1484
|| |||| | |||||||||| ||||||||||||||||| ||||| |||||||||||| |
Sbjct 1659 ATCCAAGGACAAGTACATGGGGAAATCTATTCAAGAGCTTGATCTATCTGATTGCGAGCG 1718
Query 1485 TTGCACTCCTAGCTACCGGCTTCTGCCTGCGGATTATCCGATACCAAT-TGCGAGTCAGA 1543
|||||||||||||||||||||||| ||| | |||||||| || || | || | | || |
Sbjct 1719 TTGCACTCCTAGCTACCGGCTTCTCCCTCCAGATTATCCAAT-CCCGTCTGTGCGCCACA 1777
Query 1544 GATCGGAGCT-AGGAGCTGAGGTTTTAAATGATCATTGGGTATCTGTCACTTCCGGAAGT 1602
|| | || | |||||||| || ||||||||||| ||||| ||||||||||| ||||||
Sbjct 1778 GA-CAGAAATCAGGAGCTGCTGTCTTAAATGATCACTGGGTTTCTGTCACTTCTGGAAGT 1836
Query 1603 GAAGATTATTCTTTTAAGCACATGCGCAGAAACCAATATGAAGAGAGCTTGTTCAGATGC 1662
||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1837 GAAGACTACTCTTTTAAGCACATGCGCAGAAACCAATATGAAGAAAGCTTGTTTAGATGT 1896
Query 1663 GAAGATGATAGATTTGAGTTGGACATGTTGCTGGAATCTGTGAGCTCTGCGGCCAGAAGT 1722
||||||||||||||||||||||||||| || ||||||||||| | ||||| |||| ||||
Sbjct 1897 GAAGATGATAGATTTGAGTTGGACATGCTGTTGGAATCTGTGGGATCTGCTGCCAAAAGT 1956
Query 1723 GCAGAA-AGTTTGTTGAACATCATCACAGAGAAGAAAATAAGTTTTTCTGGCTCCTTCAG 1781
|||||| | || |||||| || |||| |||||||||||||||||| ||||||||| |
Sbjct 1957 GCAGAAGAATT-GTTGAATATTATCATTGAGAAGAAAATAAGTTTTGAGGGCTCCTTCCG 2015
Query 1782 GATCGAAGACCATTTTACGGCCCTAAATTTAAGGTGTATTGAGCGACTTTATGGCGACCA 1841
||| ||||||||||| || || |||||||||||||| || ||| |||||||||| |||||
Sbjct 2016 GATTGAAGACCATTTCACAGCACTAAATTTAAGGTGCATAGAGAGACTTTATGGAGACCA 2075
Query 1842 TGGTCTTGACGTGATAGACATATTAAATAAGAATCCAGCCACTGCACTTCCTGTAATCCT 1901
|||||||||||||| ||| || || |||||||||||| |||||||||||||||| ||
Sbjct 2076 TGGTCTTGACGTGACGGACTTAATACGTAAGAATCCAGCTGCTGCACTTCCTGTAATTCT 2135
Query 1902 AACTCGTTTAAAGCAGAAACAAGGTGAATGGA-AGAAATGCCGTGACGATTTTGATAAGG 1960
|||||| || ||||||||||||| |||||||| | ||||| ||||| | |||| || ||
Sbjct 2136 AACTCGATTGAAGCAGAAACAAGATGAATGGACA-AAATGTCGTGAAGGTTTTAATGTGG 2194
Query 1961 TCTGGGCGAACGTATATGCAAAAAACCATTACAAGTCACTTGATCACCGCAGCTTCTACT 2020
|||||||| | || ||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 2195 TCTGGGCGGATGTGTATGCGAAAAACCATTACAAATCACTTGATCACCGCAGCTTCTATT 2254
Query 2021 TCAAGCAACAAGATTCAAAGAACTTGAGTGCAAAATCATTGTTGGCTGAAATTAAGGAGC 2080
| || || |||||||| ||||| |||||||||||| | || || ||||||| ||||| |
Sbjct 2255 TTAAACAGCAAGATTCTAAGAATTTGAGTGCAAAAGCGCTGGTGTCTGAAATCAAGGA-C 2313
Query 2081 TGAAA-GAGAAGTCTCAGAATGATGATGATGTTCTGT-TGTCTATTTCTGCTGGTTACAG 2138
| ||| |||||||||||||| || || |||||| | | ||||||||||||||||||||||
Sbjct 2314 TTAAAAGAGAAGTCTCAGAAAGAAGACGATGTTGT-TCTGTCTATTTCTGCTGGTTACAG 2372
Query 2139 ACAACCTATAAATCCTAATCTTGAATATGAGTATTT-GAACAGAGCTATTCATGAAGACA 2197
|||||| |||| |||| | || || ||||| ||| | || |||| ||||||||||||||
Sbjct 2373 ACAACCGATAATTCCTCACCTCGAGTATGAATATCTCGA-CAGAACTATTCATGAAGACC 2431
Query 2198 TGTTCAAAGTAGTCCAGTTTTCATGTGAGGAGTTATGTTCTACAAAAGAACAGCTCAGTA 2257
| |||||| ||||||||||||| ||||||||| |||||||||||||||| ||| | |||
Sbjct 2432 TTTTCAAACTAGTCCAGTTTTCTTGTGAGGAGATATGTTCTACAAAAGAGCAGATTGGTA 2491
Query 2258 AAGTTCTGAGGCTTTGGGAAAATTTCCTGGAGGCAG-TGCTGGGTGTTCCTCCCAGGGCC 2316
||||||||||||| |||| ||||| ||||| | | |||| |||||| | |||||||||
Sbjct 2492 AAGTTCTGAGGCTCTGGGCTAATTTTTTGGAG-CTGATGCTTGGTGTTGCACCCAGGGCC 2550
Query 2317 AAGGGCACAGAT-CTTGTTGAAGATGTTGTAATAAACCCCAAGACTCTCGATGTGAATCA 2375
||||| ||||| || ||||||||||||||| ||||| ||| | || ||
Sbjct 2551 AAGGGGTCAGATTCT-GTTGAAGATGTTGTAG-AAACC--AAG-C-----AT------CA 2594
Query 2376 CAGCACATCT-CCTAACGGGGAGGCTGCTGTGAGTTCTGGAGGAGACACAGCAAGGTTGG 2434
||| ||| | || | |||||||||| ||||||||||| | | || || ||||
Sbjct 2595 CAGTGCATTTACC-AGCGGGGAGGCTAATGTGAGTTCTG-ACGCGATT-AGT----TTGG 2647
Query 2435 CTTCTAGGAAACTTAAATCTGCTGCCAATGGAGATGAGAATTCTTCATCTGGGA-CATTC 2493
||| ||| ||| |||| |||| |||||||||||||| || ||||||||||| | | |
Sbjct 2648 TTTCCAGGCAACCAAAATTTGCTACCAATGGAGATGAGCATGCTTCATCTGGGGTC-TCC 2706
Query 2494 AAACATGG-G--A-TAGGT-TTGTTAAATAAAGATTCGACAGGGAAAGAAAATCT-TGAA 2547
|||||||| | | | ||| || || |||| ||||| |||||||||||||| | | ||
Sbjct 2707 AAACATGGTGGGACT-GGTATT-TTGAATAGGGATTCTTCAGGGAAAGAAAAT-TGT-AA 2762
Query 2548 G-ATGTTGAAA-TAGCTAACAGAGATGGTGTTGCCTGCTCTGCTGTGAAACCTC-AGAAA 2604
| ||| ||| | |||| | ||||| | | ||| || ||||| ||||| | | |||
Sbjct 2763 GGATGGTGATCCTT-CTAATAAAGATG-T-T-GCCACCTGTGCTGA-AAACCCCCAAAAA 2817
Query 2605 GAACAAGAAACTGGAAATGAAGCCGAGAAAAG 2636
|| ||||||| |||||||| |||||| |||||
Sbjct 2818 GATCAAGAAATTGGAAATGGAGCCGATAAAAG 2849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 174608144924
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5