BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01345.1 Length=1612 Score E Sequences producing significant alignments: (Bits) Value Ahg932458 jgi|Araly1|932458|scaffold_400446.1 1062 0.0 Ahg893687 jgi|Araly1|893687|Al_scaffold_0006_1683 1061 0.0 Ahg926111 jgi|Araly1|926111|scaffold_201672.1 749 0.0 > Ahg932458 jgi|Araly1|932458|scaffold_400446.1 Length=1702 Score = 1062 bits (575), Expect = 0.0 Identities = 974/1160 (84%), Gaps = 54/1160 (5%) Strand=Plus/Plus Query 261 CTAGTTCTCCCCTT-ATCTTCTTTGCGACCTC-CGTGGTTTATCCCTCTCCTCGGCTCCC 318 |||||||||| ||| | ||| || |||| || ||||| | |||||||| |||||||| | Sbjct 58 CTAGTTCTCCTCTTAACCTT-TTCGCGA-TTCTCGTGGATGATCCCTCTTCTCGGCTCTC 115 Query 319 CTTGAAGTCAATACCGGCATCTCCCTATTCCCCTCTGGATCGGAGCTTTGCTTTGACGCC 378 ||||||||||| | | |||||||| | |||| | ||||| |||||| ||| | |||||| Sbjct 116 CTTGAAGTCAAGATCAGCATCTCCTTGTTCCTCGATGGATGGGAGCTCTGCCTCGACGCC 175 Query 379 GGAGCTGTTGAAG-AGCTTTACCTTGGAAG-ATCCAACTTCTGCAGACCGAGCCTCATCG 436 |||||||| |||| | | ||| ||| | || ||||||||||||||||||| |||| Sbjct 176 GGAGCTGTGGAAGCATC-AAACCATGGGCGAAT-CAACTTCTGCAGACCGAGCTTCAT-- 231 Query 437 CAAAC-AAAC-TTCGTTTGGTTAGATCTTGTCTCT-GACGCCCTCAATTCGGCAGCTGTA 493 || | | | || | |||| |||||||||||| | || |||| ||| |||| || | | Sbjct 232 CATCCGCATCTTTTGATTGGGTAGATCTTGTCT-TAGAAGCCCCCAAATCGGTTGCGGGA 290 Query 494 -AACCCTAAGTCCGTTTTGCCGTCGCCGTCGTCGTTGGTGACAAAGAGAAGATGCGCTTG 552 | ||| || |||||| ||||| ||||| | | ||||||| | ||||||| | | | Sbjct 291 CAGCCC-AAATCCGTTCTGCCGCCGCCG-C-T-TTTGGTGAGGATGAGAAGAAGAACCT- 345 Query 553 GCGGCTAAACCTAATGCTGCCTCAGGGTTTTCGCATTGGGCCCAACCCAAGCCCCTTCTG 612 | || ||||||||||| |||||| | || ||||||| | |||||| ||||| || Sbjct 346 G-GG-TAAACCTAATGGTGCCTC---G--TT----TTGGGCCTAGCCCAAGTCCCTTTTG 394 Query 613 TCCTCC-CCCTAACCCATTACCTAAACTATT-AAAGCCCATGAAGCCTTCTGCTGGGTTA 670 |||||| || | ||||||||| ||||| || |||||||||||| |||| ||||||||| Sbjct 395 TCCTCCTTCC-AGCCCATTACCCAAACT-TTCGAAGCCCATGAAGACTTCCGCTGGGTTA 452 Query 671 AGCCCATATCCTCTAAGGCCCAGGTCTG-TTTTCAAATCTGTTTTACAAAGCCCAAATTT 729 ||||||| || ||||||||||||||||| |||| || ||||||||||||||||||||||| Sbjct 453 AGCCCATGTCTTCTAAGGCCCAGGTCTGATTTT-AATTCTGTTTTACAAAGCCCAAATTT 511 Query 730 TTTGATGTTGTTATCATTTAGGGAGAGTAATGGACGCTTTCCTGTGATGGTGATGATGGA 789 | ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 512 TCTGAAGTTGTTATCGTTTAGGGAGAGTAATGAACGCTTTCCTGTGATGGTGATGATGGA 571 Query 790 TTTAGCTTGGATTAGTAGCTCTCTCTCACAAAACCTAGTTGATAGTCTATCTCGTTTGGT 849 |||||||||||||||||| ||||| || |||||||| || |||||| ||||||||||||| Sbjct 572 TTTAGCTTGGATTAGTAGTTCTCTTTCCCAAAACCTGGTCGATAGTTTATCTCGTTTGGT 631 Query 850 CCGTTTTCTTCAGT-GTTTGAGTCTAGTCTTGAATCGTTTGGAGCTATTTTCTCTTTGGA 908 |||||| ||||| | |||||||||| ||||||| |||||||||| || |||||||||||| Sbjct 632 CCGTTTGCTTCA-TCGTTTGAGTCTGGTCTTGATTCGTTTGGAGTTAATTTCTCTTTGGA 690 Query 909 AGTGTCCTAGAGTGTTGCTGCCCACACCAAGTATCGTTAATTTACTATCGAGTTCCCTCC 968 ||||||||||||||||||| ||| |||||||| ||||||| ||||| |||||||||| Sbjct 691 AGTGTCCTAGAGTGTTGCTTCCCGTGCCAAGTATTATTAATTTCCTATCAAGTTCCCTCC 750 Query 969 TTTTAGCACCCTCTACCTCTGT-TTGGGCTGGTAATGGACGCCTTGCTATCAGAATAGTG 1027 |||||||||||||| |||||| |||| ||||||||||||||| |||| |||| || || Sbjct 751 CTTTAGCACCCTCTAACTCTGTCTTGG-CTGGTAATGGACGCCACGCTAACAGAGTAATG 809 Query 1028 GTTTGTTTAGG-TGGGAATGGTAGTTACCATTGTCGAGATAAGATGTTAAGTTTTCTTTG 1086 |||||||| || ||| || |||||||| |||||||||| ||||| ||||||| ||||| Sbjct 810 GTTTGTTTGGGCTGGCT-TGATAGTTACCTTTGTCGAGATCAGATGCTAAGTTTACTTTG 868 Query 1087 GACCCTATCCGAGACTC-CTTTACCCACCCATAGGCAAATGGCCTTTAGAGTTAAGAGGA 1145 ||| |||||| |||||| ||| ||||| |||||||||| |||||||||||||||||| || Sbjct 869 GACTCTATCCAAGACTCTCTT-ACCCAACCATAGGCAATTGGCCTTTAGAGTTAAGAAGA 927 Query 1146 TCGGCATTATGACCCTGTCTCTACCGAGTAGGTGTTACCGAAGCCTTGAAAACTCTCAAC 1205 ||||||||||||||||||||||| ||||||||||||||||||| || ||||||| || Sbjct 928 CCGGCATTATGACCCTGTCTCTACGGAGTAGGTGTTACCGAAGCTTTTTCAACTCTCTAC 987 Query 1206 TTATCCACTCACCATTTATCGCGCTCATTCATGTCATGTTAATCTATTGCTTGGATAATT 1265 || ||| |||||| |||||| | ||| |||||| ||||||||||||||||||||||| Sbjct 988 CTACCCATTCACCAATTATCGAGTTCAGTCATGT---GTTAATCTATTGCTTGGATAATT 1044 Query 1266 TGCAATCT-CTTGACATGTTGAAAAAGTACGGCATTATGACCATGTCTTCAAGAAGTGGT 1324 |||||||| || | | |||| |||||||||||||||||||||||||||||||| ||||| Sbjct 1045 TGCAATCTTCTGGT-AGGTTGGAAAAGTACGGCATTATGACCATGTCTTCAAGAGGTGGT 1103 Query 1325 TACCGTCT-TTTTCTCAACCTCGTTAACCCGTCAGCCTCCTCAACGGAGCACTTCTTC-A 1382 |||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||| | Sbjct 1104 TACCGTCTCTTTT-TCAACCTCGTTAACCCGTCAGCCTCCTCCGCGGAGCACTT-TTCCA 1161 Query 1383 AAAGCTCGGATGCATTGTTT 1402 |||||||||||||||||||| Sbjct 1162 AAAGCTCGGATGCATTGTTT 1181 > Ahg893687 jgi|Araly1|893687|Al_scaffold_0006_1683 Length=1920 Score = 1061 bits (574), Expect = 0.0 Identities = 1114/1362 (82%), Gaps = 87/1362 (6%) Strand=Plus/Plus Query 75 CGGCACCGGTAGAGCCGTTT-GCTCGCCGGTGCCGGGAGCTATCGTTC-CCTTGTCGCTC 132 |||||||||||||| | ||| |||| ||||||||||||||| || | | ||| |||| || Sbjct 111 CGGCACCGGTAGAG-C-TTTCGCTCACCGGTGCCGGGAGCTTTC-TCCTCCTCGTCGATC 167 Query 133 T-CTTCTCAATGGCTATGTCATCTGGTGT-TCT-CTATTCTCCCGTGTTCC--CATGTTT 187 | | |||||| || | | | |||||| | ||| | |||||| || |||| | ||||| Sbjct 168 TAC-TCTCAAAGGTTTTATTTTCTGGT-TATCTGC-ATTCTCTTGT-TTCCTTC-TGTTT 222 Query 188 C-GCTTGTCTTTTCT-CCCTTTGTATCC--AAAG-ATTACCTTGACCACCA-TACC-TCT 240 | || | |||| || |||||| ||||| |||| ||| ||||| || |||| || Sbjct 223 CGGC-TCTCTTCCCTCCCCTTT-TATCCAAAAAGCTTTA---TGACC-GCATTACCTTC- 275 Query 241 GAACACGTTCACTT-CTT-GTGCTAGTTCTCCCCTT-ATCTTCTTTGCGACCTC-CGTGG 296 || | | | | ||| || || |||||||||| ||| | ||| || |||| || ||||| Sbjct 276 GAGC-C-TGCTCTTATTTGGTACTAGTTCTCCTCTTAACCTT-TTCGCGA-TTCTCGTGG 331 Query 297 TTTATCCCTCTCCTCGGCTCCCCTTGAAGTCAATACCGGCATCTCCCTATTCCCCTCTGG 356 | |||||||| |||||||| |||||||||||| | | |||||||| | |||| | ||| Sbjct 332 ATGATCCCTCTTCTCGGCTCTCCTTGAAGTCAAGATCAGCATCTCCTTGTTCCTCGATGG 391 Query 357 ATCGGAGCTTTGCTTTGACGCCGGAGCTGTTGAAG-AGCTTTACCTTGGAAG-ATCCAAC 414 || |||||| ||| | |||||||||||||| |||| | | ||| ||| | || |||| Sbjct 392 ATGGGAGCTCTGCCTCGACGCCGGAGCTGTGGAAGCATC-AAACCATGGGCGAAT-CAAC 449 Query 415 TTCTGCAGACCGAGCCTCATCGCAAAC-AAAC-TTCGTTTGGTTAGATCTTGTCTCTGAC 472 ||||||||||||||| |||| || | | | || | |||| |||||||| |||| || Sbjct 450 TTCTGCAGACCGAGCTTCAT--CATCCGCATCTTTTGATTGGGTAGATCTTTTCTCAGAA 507 Query 473 GCCCTCAATTCGG-CAGCTGTA-AACCCTAAGTCCGTTTTGCCGTCGCCGTCGTCGTTGG 530 |||| ||| |||| | || | | | ||| || |||||| ||||| ||||| | | |||| Sbjct 508 GCCCCCAAATCGGTC-GCCGGACAGCCC-AAATCCGTTCTGCCGCCGCCG-C-T-TTTGG 562 Query 531 TGACAAAGAGAAGATGCGCTTGGCGGCTAAACCTAATGCTGCCTCAGGGTTTTCGCATTG 590 ||| | ||||||| | | | |||||||||||||| |||||| | || ||| Sbjct 563 TGAGGATGAGAAGAAGAACCT---GGCTAAACCTAATGGTGCCTC---G--TT----TTG 610 Query 591 GGCCCAACCCAAGCCCCTTCTGTCCTCC-CCCTAACCCATTACCTAAACTATT-AAAGCC 648 |||| | |||||| ||||| |||||||| || | | ||||||| ||||| || ||||| Sbjct 611 GGCCTAGCCCAAGTCCCTTTTGTCCTCCTTCC-AGCACATTACCCAAACT-TTCGAAGCC 668 Query 649 CATGAAGCCTTCTGCTGGGTTAAGCCCATATCCTCTAAGGCCCAGGTCTG-TTTTCAAAT 707 || |||| |||| |||||||||||| ||| || ||||||||||||||||| |||| || | Sbjct 669 CACGAAGACTTCCGCTGGGTTAAGCTCATGTCATCTAAGGCCCAGGTCTGATTTT-AATT 727 Query 708 CTGTTTTACAAAGCCCAAATTTTTTGATGTTGTTATCATTTAGGGAGAGTAATGGACGCT 767 |||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||||| Sbjct 728 ATGTTTTACAAAGCCCAAATTTTCTGAAGTTGTTATTGTTTAGGGAGAGTAATGAACGCT 787 Query 768 TTCCTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGCTCTCTCTCACAAAACCTAG 827 |||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | Sbjct 788 TTCCTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGTTCTCTTTCCCAAAACCTGG 847 Query 828 TTGATAGTCTATCTCGTTTGGTCCGTTTTCTTCAGT-GTTTGAGTCTAGTCTTGAATCGT 886 | |||||| ||||||||||||||||||| ||||| | |||||||||||||||||| |||| Sbjct 848 TCGATAGTTTATCTCGTTTGGTCCGTTTGCTTCA-TCGTTTGAGTCTAGTCTTGATTCGT 906 Query 887 TTGGAGCTATTTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCACACCAAGTATCGTT 946 |||||| || ||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 907 TTGGAGGTAATTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCGTGCCAAGTATTATT 966 Query 947 AATTTACTATCGAGTTCCCTCCTTTTAGCACCCTCTACCTCTGT-TTGGGCTGGTAATGG 1005 ||||| ||||| |||||||||| |||||||||||| | |||||| |||| |||||||||| Sbjct 967 AATTTCCTATCAAGTTCCCTCCCTTTAGCACCCTCCAACTCTGTCTTGG-CTGGTAATGG 1025 Query 1006 ACGCCTTGCTATCAGAATAGTGGTTTGTTTAGG-TGGGAATGGTAGTTACCATTGTCGAG 1064 ||||| |||| |||| || |||||||||| || ||| || |||||||| |||||||| Sbjct 1026 ACGCCACGCTAACAGAGTAATGGTTTGTTTGGGCTGGCT-TGATAGTTACCTTTGTCGAG 1084 Query 1065 ATAAGATGTTAAGTTTTCTTTGGACCCTATCCGAGACTC-CTTTACCCACCCATAGGCAA 1123 || ||||| ||||||| |||||||| |||||| |||||| ||| ||||| ||||| |||| Sbjct 1085 ATCAGATGCTAAGTTTACTTTGGACTCTATCCAAGACTCTCTT-ACCCAACCATATGCAA 1143 Query 1124 ATGGCCTTTAGAGTTAAGAGGATCGGCATTATGACCCTGTCTCTACCGAGTAGGTGTTAC 1183 |||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 1144 TTGGCCTTTAGAGTTAAGAAGACCGGCATTATGACCCTGTCTCTACGGAGTAGGTGTTAC 1203 Query 1184 CGAAGCCTTGAAAACTCTCAACTTATCCACTCACCATTTATCGCGCTCATTCATGTCATG 1243 |||||| || ||||||| || || ||| |||||| |||||| | ||| |||||| | Sbjct 1204 CGAAGCTTTTTCAACTCTCTACCTACCCATTCACCAATTATCGAGTTCAGTCATGT---G 1260 Query 1244 TTAATCTATTGCTTGGATAATTTGCAATCT-CTTGACATGTTGAAAAAGTACGGCATTAT 1302 |||||||||||||||||||||||||||||| || | | |||| |||||||||||||||| Sbjct 1261 TTAATCTATTGCTTGGATAATTTGCAATCTTCTGGT-AGGTTGGAAAAGTACGGCATTAT 1319 Query 1303 GACCATGTCTTCAAGAAGTGGTTACCGTCT-TTTTCTCAACCTCGTTAACCCGTCAGCCT 1361 |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1320 GACCATGTCTTCAAGAGGTGGTTACCGTCTCTTTT-TCAACCTCGTTAACCCGTCAGCCT 1378 Query 1362 CCTCAACGGAGCACTTCTTC-AAAAGCTCGGATGCATTGTTT 1402 |||| |||||||| | ||| ||||||||||||||||||||| Sbjct 1379 CCTCTGCGGAGCACCT-TTCCAAAAGCTCGGATGCATTGTTT 1419 > Ahg926111 jgi|Araly1|926111|scaffold_201672.1 Length=1166 Score = 749 bits (405), Expect = 0.0 Identities = 574/654 (88%), Gaps = 17/654 (3%) Strand=Plus/Plus Query 756 GTAATGGACGCTTTCCTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGCTCTCTCT 815 |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1 GTAATGAACGCTTTCTTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGTTCTCTTT 60 Query 816 CACAAAACCTAGTTGATAGTCTATCTCGTTTGGTCCGTTTTCTTCAGT-GTTTGAGTCTA 874 | |||||||| || |||||| ||||||||||||||||||| ||||| | |||||||||| Sbjct 61 CCCAAAACCTGGTCGATAGTTTATCTCGTTTGGTCCGTTTGCTTCA-TCGTTTGAGTCTG 119 Query 875 GTCTTGAATCGTTTGGAGCTATTTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCACA 934 ||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 120 GTCTTGATTCGTTTGGAGTTAATTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCGTG 179 Query 935 CCAAGTATCGTTAATTTACTATCGAGTTCCCTCCTTTTAGCACCCTCTACCTCTGT-TTG 993 |||||||| ||||||| ||||| |||||||||| |||||||||||||| |||||| ||| Sbjct 180 CCAAGTATTATTAATTTCCTATCAAGTTCCCTCCCTTTAGCACCCTCTAACTCTGTCTTG 239 Query 994 GGCTGGTAATGGACGCCTTGCTATCAGAATAGTGGTTTGTTTAGG-TGGGAATGGTAGTT 1052 | ||||||||||||||| |||| |||| || |||||||||| || ||| || ||||| Sbjct 240 G-CTGGTAATGGACGCCACGCTAACAGAGTAATGGTTTGTTTGGGCTGGCT-TGATAGTT 297 Query 1053 ACCATTGTCGAGATAAGATGTTAAGTTTTCTTTGGACCCTATCCGAGACTC-CTTTACCC 1111 ||| |||||||||| ||||| ||||||| |||||||| |||| | |||||| ||| |||| Sbjct 298 ACCTTTGTCGAGATCAGATGCTAAGTTTACTTTGGACTCTATACAAGACTCTCTT-ACCC 356 Query 1112 ACCCATAGGCAAATGGCCTTTAGAGTTAAGAGGATCGGCATTATGACCCTGTCTCTACCG 1171 | |||||||||| |||||||||||||||||| || ||||||||||||||||||||||| | Sbjct 357 AACCATAGGCAATTGGCCTTTAGAGTTAAGAAGACCGGCATTATGACCCTGTCTCTACGG 416 Query 1172 AGTAGGTGTTACCGAAGCCTTGAAAACTCTCAACTTATCCACTCACCATTTATCGCGCTC 1231 |||||||||||||||||| || ||||||| || || ||| |||||| |||||| | || Sbjct 417 AGTAGGTGTTACCGAAGCTTTTTCAACTCTCTACCTACCCATTCACCAATTATCGAGTTC 476 Query 1232 ATTCATGTCATGTTAATCTATTGCTTGGATAATTTGCAATCT-CTTGACATGTTGAAAAA 1290 | |||||| ||||||||||||||||||||||||||||||| || | | |||| |||| Sbjct 477 AGTCATGT---GTTAATCTATTGCTTGGATAATTTGCAATCTTCTGGT-AGGTTGGAAAA 532 Query 1291 GTACGGCATTATGACCATGTCTTCAAGAAGTGGTTACCGTCT-TTTTCTCAACCTCGTTA 1349 |||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| Sbjct 533 GTACGGCATTATGACCATGTCTTCAAGAGGTGGTTACCGTCTCTTTT-TCAACCTCGTTA 591 Query 1350 ACCCGTCAGCCTCCTCAACGGAGCACTTCTTC-AAAAGCTCGGATGCATTGTTT 1402 |||||||||||||||| |||||||| | ||| ||||||||||||||||||||| Sbjct 592 ACCCGTCAGCCTCCTCCGCGGAGCACCT-TTCCAAAAGCTCGGATGCATTGTTT 644 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60411128570 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5