BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01345.1
Length=1612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932458 jgi|Araly1|932458|scaffold_400446.1 1062 0.0
Ahg893687 jgi|Araly1|893687|Al_scaffold_0006_1683 1061 0.0
Ahg926111 jgi|Araly1|926111|scaffold_201672.1 749 0.0
> Ahg932458 jgi|Araly1|932458|scaffold_400446.1
Length=1702
Score = 1062 bits (575), Expect = 0.0
Identities = 974/1160 (84%), Gaps = 54/1160 (5%)
Strand=Plus/Plus
Query 261 CTAGTTCTCCCCTT-ATCTTCTTTGCGACCTC-CGTGGTTTATCCCTCTCCTCGGCTCCC 318
|||||||||| ||| | ||| || |||| || ||||| | |||||||| |||||||| |
Sbjct 58 CTAGTTCTCCTCTTAACCTT-TTCGCGA-TTCTCGTGGATGATCCCTCTTCTCGGCTCTC 115
Query 319 CTTGAAGTCAATACCGGCATCTCCCTATTCCCCTCTGGATCGGAGCTTTGCTTTGACGCC 378
||||||||||| | | |||||||| | |||| | ||||| |||||| ||| | ||||||
Sbjct 116 CTTGAAGTCAAGATCAGCATCTCCTTGTTCCTCGATGGATGGGAGCTCTGCCTCGACGCC 175
Query 379 GGAGCTGTTGAAG-AGCTTTACCTTGGAAG-ATCCAACTTCTGCAGACCGAGCCTCATCG 436
|||||||| |||| | | ||| ||| | || ||||||||||||||||||| ||||
Sbjct 176 GGAGCTGTGGAAGCATC-AAACCATGGGCGAAT-CAACTTCTGCAGACCGAGCTTCAT-- 231
Query 437 CAAAC-AAAC-TTCGTTTGGTTAGATCTTGTCTCT-GACGCCCTCAATTCGGCAGCTGTA 493
|| | | | || | |||| |||||||||||| | || |||| ||| |||| || | |
Sbjct 232 CATCCGCATCTTTTGATTGGGTAGATCTTGTCT-TAGAAGCCCCCAAATCGGTTGCGGGA 290
Query 494 -AACCCTAAGTCCGTTTTGCCGTCGCCGTCGTCGTTGGTGACAAAGAGAAGATGCGCTTG 552
| ||| || |||||| ||||| ||||| | | ||||||| | ||||||| | | |
Sbjct 291 CAGCCC-AAATCCGTTCTGCCGCCGCCG-C-T-TTTGGTGAGGATGAGAAGAAGAACCT- 345
Query 553 GCGGCTAAACCTAATGCTGCCTCAGGGTTTTCGCATTGGGCCCAACCCAAGCCCCTTCTG 612
| || ||||||||||| |||||| | || ||||||| | |||||| ||||| ||
Sbjct 346 G-GG-TAAACCTAATGGTGCCTC---G--TT----TTGGGCCTAGCCCAAGTCCCTTTTG 394
Query 613 TCCTCC-CCCTAACCCATTACCTAAACTATT-AAAGCCCATGAAGCCTTCTGCTGGGTTA 670
|||||| || | ||||||||| ||||| || |||||||||||| |||| |||||||||
Sbjct 395 TCCTCCTTCC-AGCCCATTACCCAAACT-TTCGAAGCCCATGAAGACTTCCGCTGGGTTA 452
Query 671 AGCCCATATCCTCTAAGGCCCAGGTCTG-TTTTCAAATCTGTTTTACAAAGCCCAAATTT 729
||||||| || ||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 453 AGCCCATGTCTTCTAAGGCCCAGGTCTGATTTT-AATTCTGTTTTACAAAGCCCAAATTT 511
Query 730 TTTGATGTTGTTATCATTTAGGGAGAGTAATGGACGCTTTCCTGTGATGGTGATGATGGA 789
| ||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 512 TCTGAAGTTGTTATCGTTTAGGGAGAGTAATGAACGCTTTCCTGTGATGGTGATGATGGA 571
Query 790 TTTAGCTTGGATTAGTAGCTCTCTCTCACAAAACCTAGTTGATAGTCTATCTCGTTTGGT 849
|||||||||||||||||| ||||| || |||||||| || |||||| |||||||||||||
Sbjct 572 TTTAGCTTGGATTAGTAGTTCTCTTTCCCAAAACCTGGTCGATAGTTTATCTCGTTTGGT 631
Query 850 CCGTTTTCTTCAGT-GTTTGAGTCTAGTCTTGAATCGTTTGGAGCTATTTTCTCTTTGGA 908
|||||| ||||| | |||||||||| ||||||| |||||||||| || ||||||||||||
Sbjct 632 CCGTTTGCTTCA-TCGTTTGAGTCTGGTCTTGATTCGTTTGGAGTTAATTTCTCTTTGGA 690
Query 909 AGTGTCCTAGAGTGTTGCTGCCCACACCAAGTATCGTTAATTTACTATCGAGTTCCCTCC 968
||||||||||||||||||| ||| |||||||| ||||||| ||||| ||||||||||
Sbjct 691 AGTGTCCTAGAGTGTTGCTTCCCGTGCCAAGTATTATTAATTTCCTATCAAGTTCCCTCC 750
Query 969 TTTTAGCACCCTCTACCTCTGT-TTGGGCTGGTAATGGACGCCTTGCTATCAGAATAGTG 1027
|||||||||||||| |||||| |||| ||||||||||||||| |||| |||| || ||
Sbjct 751 CTTTAGCACCCTCTAACTCTGTCTTGG-CTGGTAATGGACGCCACGCTAACAGAGTAATG 809
Query 1028 GTTTGTTTAGG-TGGGAATGGTAGTTACCATTGTCGAGATAAGATGTTAAGTTTTCTTTG 1086
|||||||| || ||| || |||||||| |||||||||| ||||| ||||||| |||||
Sbjct 810 GTTTGTTTGGGCTGGCT-TGATAGTTACCTTTGTCGAGATCAGATGCTAAGTTTACTTTG 868
Query 1087 GACCCTATCCGAGACTC-CTTTACCCACCCATAGGCAAATGGCCTTTAGAGTTAAGAGGA 1145
||| |||||| |||||| ||| ||||| |||||||||| |||||||||||||||||| ||
Sbjct 869 GACTCTATCCAAGACTCTCTT-ACCCAACCATAGGCAATTGGCCTTTAGAGTTAAGAAGA 927
Query 1146 TCGGCATTATGACCCTGTCTCTACCGAGTAGGTGTTACCGAAGCCTTGAAAACTCTCAAC 1205
||||||||||||||||||||||| ||||||||||||||||||| || ||||||| ||
Sbjct 928 CCGGCATTATGACCCTGTCTCTACGGAGTAGGTGTTACCGAAGCTTTTTCAACTCTCTAC 987
Query 1206 TTATCCACTCACCATTTATCGCGCTCATTCATGTCATGTTAATCTATTGCTTGGATAATT 1265
|| ||| |||||| |||||| | ||| |||||| |||||||||||||||||||||||
Sbjct 988 CTACCCATTCACCAATTATCGAGTTCAGTCATGT---GTTAATCTATTGCTTGGATAATT 1044
Query 1266 TGCAATCT-CTTGACATGTTGAAAAAGTACGGCATTATGACCATGTCTTCAAGAAGTGGT 1324
|||||||| || | | |||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1045 TGCAATCTTCTGGT-AGGTTGGAAAAGTACGGCATTATGACCATGTCTTCAAGAGGTGGT 1103
Query 1325 TACCGTCT-TTTTCTCAACCTCGTTAACCCGTCAGCCTCCTCAACGGAGCACTTCTTC-A 1382
|||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||| |
Sbjct 1104 TACCGTCTCTTTT-TCAACCTCGTTAACCCGTCAGCCTCCTCCGCGGAGCACTT-TTCCA 1161
Query 1383 AAAGCTCGGATGCATTGTTT 1402
||||||||||||||||||||
Sbjct 1162 AAAGCTCGGATGCATTGTTT 1181
> Ahg893687 jgi|Araly1|893687|Al_scaffold_0006_1683
Length=1920
Score = 1061 bits (574), Expect = 0.0
Identities = 1114/1362 (82%), Gaps = 87/1362 (6%)
Strand=Plus/Plus
Query 75 CGGCACCGGTAGAGCCGTTT-GCTCGCCGGTGCCGGGAGCTATCGTTC-CCTTGTCGCTC 132
|||||||||||||| | ||| |||| ||||||||||||||| || | | ||| |||| ||
Sbjct 111 CGGCACCGGTAGAG-C-TTTCGCTCACCGGTGCCGGGAGCTTTC-TCCTCCTCGTCGATC 167
Query 133 T-CTTCTCAATGGCTATGTCATCTGGTGT-TCT-CTATTCTCCCGTGTTCC--CATGTTT 187
| | |||||| || | | | |||||| | ||| | |||||| || |||| | |||||
Sbjct 168 TAC-TCTCAAAGGTTTTATTTTCTGGT-TATCTGC-ATTCTCTTGT-TTCCTTC-TGTTT 222
Query 188 C-GCTTGTCTTTTCT-CCCTTTGTATCC--AAAG-ATTACCTTGACCACCA-TACC-TCT 240
| || | |||| || |||||| ||||| |||| ||| ||||| || |||| ||
Sbjct 223 CGGC-TCTCTTCCCTCCCCTTT-TATCCAAAAAGCTTTA---TGACC-GCATTACCTTC- 275
Query 241 GAACACGTTCACTT-CTT-GTGCTAGTTCTCCCCTT-ATCTTCTTTGCGACCTC-CGTGG 296
|| | | | | ||| || || |||||||||| ||| | ||| || |||| || |||||
Sbjct 276 GAGC-C-TGCTCTTATTTGGTACTAGTTCTCCTCTTAACCTT-TTCGCGA-TTCTCGTGG 331
Query 297 TTTATCCCTCTCCTCGGCTCCCCTTGAAGTCAATACCGGCATCTCCCTATTCCCCTCTGG 356
| |||||||| |||||||| |||||||||||| | | |||||||| | |||| | |||
Sbjct 332 ATGATCCCTCTTCTCGGCTCTCCTTGAAGTCAAGATCAGCATCTCCTTGTTCCTCGATGG 391
Query 357 ATCGGAGCTTTGCTTTGACGCCGGAGCTGTTGAAG-AGCTTTACCTTGGAAG-ATCCAAC 414
|| |||||| ||| | |||||||||||||| |||| | | ||| ||| | || ||||
Sbjct 392 ATGGGAGCTCTGCCTCGACGCCGGAGCTGTGGAAGCATC-AAACCATGGGCGAAT-CAAC 449
Query 415 TTCTGCAGACCGAGCCTCATCGCAAAC-AAAC-TTCGTTTGGTTAGATCTTGTCTCTGAC 472
||||||||||||||| |||| || | | | || | |||| |||||||| |||| ||
Sbjct 450 TTCTGCAGACCGAGCTTCAT--CATCCGCATCTTTTGATTGGGTAGATCTTTTCTCAGAA 507
Query 473 GCCCTCAATTCGG-CAGCTGTA-AACCCTAAGTCCGTTTTGCCGTCGCCGTCGTCGTTGG 530
|||| ||| |||| | || | | | ||| || |||||| ||||| ||||| | | ||||
Sbjct 508 GCCCCCAAATCGGTC-GCCGGACAGCCC-AAATCCGTTCTGCCGCCGCCG-C-T-TTTGG 562
Query 531 TGACAAAGAGAAGATGCGCTTGGCGGCTAAACCTAATGCTGCCTCAGGGTTTTCGCATTG 590
||| | ||||||| | | | |||||||||||||| |||||| | || |||
Sbjct 563 TGAGGATGAGAAGAAGAACCT---GGCTAAACCTAATGGTGCCTC---G--TT----TTG 610
Query 591 GGCCCAACCCAAGCCCCTTCTGTCCTCC-CCCTAACCCATTACCTAAACTATT-AAAGCC 648
|||| | |||||| ||||| |||||||| || | | ||||||| ||||| || |||||
Sbjct 611 GGCCTAGCCCAAGTCCCTTTTGTCCTCCTTCC-AGCACATTACCCAAACT-TTCGAAGCC 668
Query 649 CATGAAGCCTTCTGCTGGGTTAAGCCCATATCCTCTAAGGCCCAGGTCTG-TTTTCAAAT 707
|| |||| |||| |||||||||||| ||| || ||||||||||||||||| |||| || |
Sbjct 669 CACGAAGACTTCCGCTGGGTTAAGCTCATGTCATCTAAGGCCCAGGTCTGATTTT-AATT 727
Query 708 CTGTTTTACAAAGCCCAAATTTTTTGATGTTGTTATCATTTAGGGAGAGTAATGGACGCT 767
|||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||||
Sbjct 728 ATGTTTTACAAAGCCCAAATTTTCTGAAGTTGTTATTGTTTAGGGAGAGTAATGAACGCT 787
Query 768 TTCCTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGCTCTCTCTCACAAAACCTAG 827
|||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
Sbjct 788 TTCCTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGTTCTCTTTCCCAAAACCTGG 847
Query 828 TTGATAGTCTATCTCGTTTGGTCCGTTTTCTTCAGT-GTTTGAGTCTAGTCTTGAATCGT 886
| |||||| ||||||||||||||||||| ||||| | |||||||||||||||||| ||||
Sbjct 848 TCGATAGTTTATCTCGTTTGGTCCGTTTGCTTCA-TCGTTTGAGTCTAGTCTTGATTCGT 906
Query 887 TTGGAGCTATTTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCACACCAAGTATCGTT 946
|||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 907 TTGGAGGTAATTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCGTGCCAAGTATTATT 966
Query 947 AATTTACTATCGAGTTCCCTCCTTTTAGCACCCTCTACCTCTGT-TTGGGCTGGTAATGG 1005
||||| ||||| |||||||||| |||||||||||| | |||||| |||| ||||||||||
Sbjct 967 AATTTCCTATCAAGTTCCCTCCCTTTAGCACCCTCCAACTCTGTCTTGG-CTGGTAATGG 1025
Query 1006 ACGCCTTGCTATCAGAATAGTGGTTTGTTTAGG-TGGGAATGGTAGTTACCATTGTCGAG 1064
||||| |||| |||| || |||||||||| || ||| || |||||||| ||||||||
Sbjct 1026 ACGCCACGCTAACAGAGTAATGGTTTGTTTGGGCTGGCT-TGATAGTTACCTTTGTCGAG 1084
Query 1065 ATAAGATGTTAAGTTTTCTTTGGACCCTATCCGAGACTC-CTTTACCCACCCATAGGCAA 1123
|| ||||| ||||||| |||||||| |||||| |||||| ||| ||||| ||||| ||||
Sbjct 1085 ATCAGATGCTAAGTTTACTTTGGACTCTATCCAAGACTCTCTT-ACCCAACCATATGCAA 1143
Query 1124 ATGGCCTTTAGAGTTAAGAGGATCGGCATTATGACCCTGTCTCTACCGAGTAGGTGTTAC 1183
|||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1144 TTGGCCTTTAGAGTTAAGAAGACCGGCATTATGACCCTGTCTCTACGGAGTAGGTGTTAC 1203
Query 1184 CGAAGCCTTGAAAACTCTCAACTTATCCACTCACCATTTATCGCGCTCATTCATGTCATG 1243
|||||| || ||||||| || || ||| |||||| |||||| | ||| |||||| |
Sbjct 1204 CGAAGCTTTTTCAACTCTCTACCTACCCATTCACCAATTATCGAGTTCAGTCATGT---G 1260
Query 1244 TTAATCTATTGCTTGGATAATTTGCAATCT-CTTGACATGTTGAAAAAGTACGGCATTAT 1302
|||||||||||||||||||||||||||||| || | | |||| ||||||||||||||||
Sbjct 1261 TTAATCTATTGCTTGGATAATTTGCAATCTTCTGGT-AGGTTGGAAAAGTACGGCATTAT 1319
Query 1303 GACCATGTCTTCAAGAAGTGGTTACCGTCT-TTTTCTCAACCTCGTTAACCCGTCAGCCT 1361
|||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1320 GACCATGTCTTCAAGAGGTGGTTACCGTCTCTTTT-TCAACCTCGTTAACCCGTCAGCCT 1378
Query 1362 CCTCAACGGAGCACTTCTTC-AAAAGCTCGGATGCATTGTTT 1402
|||| |||||||| | ||| |||||||||||||||||||||
Sbjct 1379 CCTCTGCGGAGCACCT-TTCCAAAAGCTCGGATGCATTGTTT 1419
> Ahg926111 jgi|Araly1|926111|scaffold_201672.1
Length=1166
Score = 749 bits (405), Expect = 0.0
Identities = 574/654 (88%), Gaps = 17/654 (3%)
Strand=Plus/Plus
Query 756 GTAATGGACGCTTTCCTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGCTCTCTCT 815
|||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 GTAATGAACGCTTTCTTGTGATGGTGATGATGGATTTAGCTTGGATTAGTAGTTCTCTTT 60
Query 816 CACAAAACCTAGTTGATAGTCTATCTCGTTTGGTCCGTTTTCTTCAGT-GTTTGAGTCTA 874
| |||||||| || |||||| ||||||||||||||||||| ||||| | ||||||||||
Sbjct 61 CCCAAAACCTGGTCGATAGTTTATCTCGTTTGGTCCGTTTGCTTCA-TCGTTTGAGTCTG 119
Query 875 GTCTTGAATCGTTTGGAGCTATTTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCACA 934
||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 120 GTCTTGATTCGTTTGGAGTTAATTTCTCTTTGGAAGTGTCCTAGAGTGTTGCTGCCCGTG 179
Query 935 CCAAGTATCGTTAATTTACTATCGAGTTCCCTCCTTTTAGCACCCTCTACCTCTGT-TTG 993
|||||||| ||||||| ||||| |||||||||| |||||||||||||| |||||| |||
Sbjct 180 CCAAGTATTATTAATTTCCTATCAAGTTCCCTCCCTTTAGCACCCTCTAACTCTGTCTTG 239
Query 994 GGCTGGTAATGGACGCCTTGCTATCAGAATAGTGGTTTGTTTAGG-TGGGAATGGTAGTT 1052
| ||||||||||||||| |||| |||| || |||||||||| || ||| || |||||
Sbjct 240 G-CTGGTAATGGACGCCACGCTAACAGAGTAATGGTTTGTTTGGGCTGGCT-TGATAGTT 297
Query 1053 ACCATTGTCGAGATAAGATGTTAAGTTTTCTTTGGACCCTATCCGAGACTC-CTTTACCC 1111
||| |||||||||| ||||| ||||||| |||||||| |||| | |||||| ||| ||||
Sbjct 298 ACCTTTGTCGAGATCAGATGCTAAGTTTACTTTGGACTCTATACAAGACTCTCTT-ACCC 356
Query 1112 ACCCATAGGCAAATGGCCTTTAGAGTTAAGAGGATCGGCATTATGACCCTGTCTCTACCG 1171
| |||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 357 AACCATAGGCAATTGGCCTTTAGAGTTAAGAAGACCGGCATTATGACCCTGTCTCTACGG 416
Query 1172 AGTAGGTGTTACCGAAGCCTTGAAAACTCTCAACTTATCCACTCACCATTTATCGCGCTC 1231
|||||||||||||||||| || ||||||| || || ||| |||||| |||||| | ||
Sbjct 417 AGTAGGTGTTACCGAAGCTTTTTCAACTCTCTACCTACCCATTCACCAATTATCGAGTTC 476
Query 1232 ATTCATGTCATGTTAATCTATTGCTTGGATAATTTGCAATCT-CTTGACATGTTGAAAAA 1290
| |||||| ||||||||||||||||||||||||||||||| || | | |||| ||||
Sbjct 477 AGTCATGT---GTTAATCTATTGCTTGGATAATTTGCAATCTTCTGGT-AGGTTGGAAAA 532
Query 1291 GTACGGCATTATGACCATGTCTTCAAGAAGTGGTTACCGTCT-TTTTCTCAACCTCGTTA 1349
|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct 533 GTACGGCATTATGACCATGTCTTCAAGAGGTGGTTACCGTCTCTTTT-TCAACCTCGTTA 591
Query 1350 ACCCGTCAGCCTCCTCAACGGAGCACTTCTTC-AAAAGCTCGGATGCATTGTTT 1402
|||||||||||||||| |||||||| | ||| |||||||||||||||||||||
Sbjct 592 ACCCGTCAGCCTCCTCCGCGGAGCACCT-TTCCAAAAGCTCGGATGCATTGTTT 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60411128570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5