BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01420.1
Length=2254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317048 jgi|Araly1|317048|fgenesh1_pm.C_scaffold_3000064 3001 0.0
Ahg902948 jgi|Araly1|902948|Al_scaffold_0003_76 97.1 5e-19
> Ahg317048 jgi|Araly1|317048|fgenesh1_pm.C_scaffold_3000064
Length=1920
Score = 3001 bits (1625), Expect = 0.0
Identities = 1823/1921 (95%), Gaps = 4/1921 (0%)
Strand=Plus/Plus
Query 112 ATGAAAGTAATTACTTCCCTAATCTCTTCTATTTTGCTTAAATTCATCCACAAAGACTTC 171
||||||| ||||||||| |||||||||||| ||||||||||||| |||||| |||||||
Sbjct 1 ATGAAAGCAATTACTTCTCTAATCTCTTCTGTTTTGCTTAAATTTATCCACGAAGACTTT 60
Query 172 CATGAGATTTA-TGCAAGAATGTCCCTCCTCGATCGGTTTCTTCTTCTTATCGTGCATGG 230
||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 61 CATGAGATTTACT-CAAGAATGTCCCTCCTCGATCGTTTTCTACTTCTTATCGTGCATGC 119
Query 231 AGTGGATAAGATGGTTCCATGGCATAAGCTTCCAGTATTCTTGGGGTTAACCTATCTTGA 290
||||||||||||||||||||||||||||||||| || |||||||| ||| ||||||||||
Sbjct 120 AGTGGATAAGATGGTTCCATGGCATAAGCTTCCGGTTTTCTTGGGTTTAGCCTATCTTGA 179
Query 291 AGTACGAAGACATCTTCACCAACAATACAATCTTCTCAACGTCGGTCAAACTCCGACTGG 350
|||||| ||||||||||||||| ||||||||||| ||||||| ||||||| |||| |||
Sbjct 180 AGTACGTAGACATCTTCACCAAGAATACAATCTTATCAACGTGGGTCAAAGTCCGGTTGG 239
Query 351 GATCCGGTTTGATCCTGCTAATTATCCGTACCGGACTGCTGACGGAAAATTCAATGATCC 410
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 GACCCGGTTTGATCCTGCTAATTATCCGTACCGGACTGCTGACGGAAAGTTCAATGATCC 299
Query 411 CTTTAATGAAGGCGTCGGCAGTCAAAATAGTTTTTTCGGGAGAAATTGTCCCCCCGTCGA 470
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 300 GTTTAATGAAGGCGTCGGCAGTCAAAATAGCTTCTTCGGAAGAAATTGTCCCCCCGTCGA 359
Query 471 TCAGA-AATCAAAGTTACGGAGGCCAGACCCCATGGTGGTGGCGACAAAACTATTAGGAA 529
||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 TCAGATAA-CAAAGTTACTGAGGCCAGACCCCATGGTGGTGGCGTCAAAACTATTAGGAA 418
Query 530 GGAAAAAGTTTATCGACACGGGAAAACAATTCAACATGATTGCAGCTTCTTGGATTCAGT 589
||| ||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |
Sbjct 419 GGAGAAAGTTTATTGACACAGGAAAACAATTCAATATGATCGCAGCTTCTTGGATTCAAT 478
Query 590 TCATGATCCATGATTGGATTGATCATCTTGAAGACACTCACCAAATCGAACTTGTCGCTC 649
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||
Sbjct 479 TCATGATCCATGATTGGATTGATCATCTTGAAGATACTCGCCAAATCGAGCTTGTGGCTC 538
Query 650 CAAAAGAAGTAGCGAGCAAGTGTCCCTTAAGCTCCTTTAGGTTCTTAAAGACCAAGGAAG 709
| ||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 539 CGAAAGAAGTAGCGAACAAGTGTCCCTTAAGCTCCTTTAGCTTCTTCAAGACAAAGGAAG 598
Query 710 TCCCTACCGGTTTCTTCGAAATCAAGACTGGCTCGCAAAATATCCGTACACCTTGGTGGG 769
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 599 TCCCTACCGGTTTCTTCGAAATCAAGACTGGTTCGCTAAATATCCGTACACCTTGGTGGG 658
Query 770 ATTCGAGCGTCATCTATGGAAGCAACTCGAAAACATTGGATAGAGTAAGAACTTACAAAG 829
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 659 ATTCGAGCGTCATCTATGGAAGCAACTCGAAAATATTGGATAGAGTAAGAACTTACAAAG 718
Query 830 ACGGGAAACTAAAGATATCGGAGGAGACGGGTCTCCTTCTCCATGACGAAGACGGTTTAG 889
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 ATGGGAAACTGAAGATATCGGAGGAGACGGGTCTCCTTCTCCATGACGAAGACGGGTTAG 778
Query 890 CTATCTCCGGCGACATTCGTAACAGTTGGGCTGGTGTCTCCGCTTTGCAAGCTCTCTTCA 949
||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 779 CTATCTCCGGCGATATTCGTAACAGTTGGGTTGGCGTCTCCGCTTTGCAAGCTCTCTTCA 838
Query 950 TCAAAGAGCACAACGCCGTATGCGACGCCCTCAAGGATGAGGATGATGATTTGGAAGACG 1009
|||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||
Sbjct 839 TCAAAGAGCACAACGCTGTATGCGACGCCCTCAAGGATGAGGATAAGGATTTGGAAGACG 898
Query 1010 AAGATTTGTACCGGTACGCTAGGCTAGTGACCTCAGCCGTGGTAGCCAAGATTCACACCA 1069
||||||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 899 AAGATTTGTACCGGTACGCGAGGCTAGTGACTTCAGCGGTGATAGCCAAGATTCACACCA 958
Query 1070 TAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGCGAGCAAATT 1129
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 TAGATTGGACAGTCCAGCTTCTCAAAACCGACACTTTACTTGCTGGGATGAGAGCAAATT 1018
Query 1130 GGTACGGACTACTAGGAAAGAAGTTTAAAGATTCTTTCGGACATGCAGGCAGTTCGATCT 1189
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1019 GGTACGGACTACTAGGAAAGAAGTTTAAAGATTCTTTCGGACATGCAGGAAGTTCGATCT 1078
Query 1190 TGGGAGGTGTCGTGGGAATGAAGAAACCGCAAAATCATGGGGTCCCTTACTCTCTAACTG 1249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1079 TGGGAGGTGTCGTGGGAATGAAGAAACCGCAAAATCATGGGGTCCCTTACTCTCTAACCG 1138
Query 1250 AAGATTTCACCAGCGTCTATCGAATGCATTCTCTCTTACCTGATCAACTCCATATACTTG 1309
| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| || | ||
Sbjct 1139 AGGATTTCACTAGCGTCTATCGAATGCACTCTCTCTTACCTGATCATCTCCAGATGCGTG 1198
Query 1310 ACATTGATGATGTACCAGGAACTAATAAATCACTACCGTTGATTCAAGAGATTTCTATGA 1369
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 ACATTGATGATGTATCAGGAACTAATAAATCACTACCGTTGATTAAAGAGATTTCTATGG 1258
Query 1370 GAGATTTGATTGGTCGCAAGGGAGAAGAAACCATGTCTCACATTGGATTCACTAAGCTAA 1429
|| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1259 GAAATTTGATTGGTCGTAAGGGAGAAGAAACCATGTCTCAGATTGGATTCACTAAGCTAA 1318
Query 1430 TGGTCTCAATGGGTCACCAAGCAAGTGGTGCCCTTGAACTGATGAATTATCCGATGTGGT 1489
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1319 TGGTCTCAATGGGTCACCAAGCAAGTGGTGCCCTTGAACTGATGAATTATCCAATGTGGT 1378
Query 1490 TAAGAGACATTGTTCCCCACGACCCCAACGGCCAAGCTCGTCCAGACCACGTCGACTTAG 1549
||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 1379 TAAGAGACATTGTTCCCCAAGACCCCAACGGCCAAGATCGTCCGGACCACGTCGACTTAG 1438
Query 1550 CTGCTTTAGAGATCTACAGGGACAGGGAGAGGAGCGTCCCACGGTACAACGAGTTCAGGA 1609
|||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1439 CTGCTTTAGAGATCTATAGGGACAGGGAGAGGAACGTCCCACGGTACAACGATTTCAGGA 1498
Query 1610 GATCTATGTTTATGATTCCGATAACCAAGTGGGAAGATCTAACGGAGGATGAGGAAGCTA 1669
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1499 GATCTATGTTTATGATTCCGATAACCAAGTGGGAAGATCTAACGGATGATGAGGAAGCTA 1558
Query 1670 TTGAAGTGTTGGATGACGTGTACGATGGTGATGTGGAGGAGCTTGATCTTCTCGTGGGAC 1729
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TTAAAGTGTTGGATGACGTGTACGATGGTGATGTGGAGGAGCTTGATCTTCTCGTGGGAC 1618
Query 1730 TTATGGCAGAGAAGAAAATCAAAGGTTTTGCTATCAGTGAGACTGCTTTTTACATTTTCC 1789
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TTATGGCAGAGAAGAAAATCAAAGGTTTTGCTATCAGTGAGACTGCTTTTTACATTTTCA 1678
Query 1790 TCATCATGGCCACAAGGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAA 1849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TCATCATGGCCACAAGGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAA 1738
Query 1850 CGATTTACACGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGATGTGA 1909
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 CGATTTATTCGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGATGTGT 1798
Query 1910 TTGATCGTCATTATCCTGATATGACAGACAAATGGATGAACTCTGAAAGTGCATTTTCAG 1969
||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |
Sbjct 1799 TTGATCGTCATTATCCTGAAATGACTGATAAATGGATGAACTCTGAAAGTGCATTTTCGG 1858
Query 1970 TATGGGATTCACCTCCACTTACCAAAAATCCAATCCCTCTCTATCTCCGAATTCCCTCTT 2029
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1859 TATGGGATTCACCTCCAGTTACCAAAAATCCAATCCCTCTCTATCTCCGAATTCCTTCTT 1918
Query 2030 A 2030
|
Sbjct 1919 A 1919
> Ahg902948 jgi|Araly1|902948|Al_scaffold_0003_76
Length=447
Score = 97.1 bits (52), Expect = 5e-19
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 676 TTAAGCTCCTTTAGGTTCTTAAAGACCAAGGAAGTCCCTACCGGTTTCTTCGAAATCAAG 735
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 447 TTAAGCTCCTTTAGCTTCTTCAAGACAAAGGAAGTCCCTACCGGTTTCTTCGAAATCAAG 388
Query 736 A 736
|
Sbjct 387 A 387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84865065860
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5