BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01430.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927622 jgi|Araly1|927622|scaffold_300079.1 811 0.0
> Ahg927622 jgi|Araly1|927622|scaffold_300079.1
Length=577
Score = 811 bits (439), Expect = 0.0
Identities = 538/584 (92%), Gaps = 13/584 (2%)
Strand=Plus/Plus
Query 91 GTTTCTGT-T-TCTCTCTGAGAATGAGTCATCAATCGCCGCCGATCGCTGAAGTTGATGC 148
|||||| | | ||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1 GTTTCTCTCTATCTCTCTGAGAATGAGTCACCAATCGCCGCCGATCTCTGAAGTTGATGC 60
Query 149 CACCGACGATATGCACGAGGCGTTGTTCGCGAAGCGAGGTTGTTGTTTCCTCATGCCCTG 208
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 61 CACCGACGATATGCACGAAGCGTTGTTCGCGAAGCGAGGCTGTTGTTTCCTTATGCCATG 120
Query 209 CCTTGCCTCATCTCAGCCATCAACTCGCGGCGGATCTGTGTGGTGGCAACGGATCACGAC 268
||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTAGCCTCATCTCAGCCGTCCACTCGCGGCGGATCTGTGTGGTGGCAACGGATCACGAC 180
Query 269 CGTCGACAAACTCGAACCCGACGAGCGATGGTGGATCCGAGGGTGGCGGAGGATGAGGGA 328
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCGACAAACTCGAACCCGACGAACGATGGTGGATCCGAGGGTGGCGGAGGATGAGGGA 240
Query 329 GTGGTCGGAGCTCGTCGCTGGACCTAGATGGAAGACGTATATCCGCCGGTTCGGACGCAG 388
|||||||||||| ||||| || |||||||||||||| | ||||||||| ||||||||||
Sbjct 241 GTGGTCGGAGCTTGTCGCCGGTCCTAGATGGAAGACTTTTATCCGCCGATTCGGACGCAA 300
Query 389 CAACTGCTGTGGAGGAGGAGGAGGGAGAGTCGGAAACAGCAGCGGAGGATGCGGAGGTGG 448
| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 301 CCACTGCTGCGGAGGAGGAGGAGGGAGAGTCGGAAACAGTAGCGGAGGATGC------GG 354
Query 449 TGCAATGCCTAACCGGTCATCGGATCAGGGTAAATTCCGGTACGATCAGTTGAGCTACTC 508
||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 355 TGCAATGACTAACCGG---TCGGATCAGGGTAAATTCCGGTACGATCCGTTGAGCTACTC 411
Query 509 GTTAAATTTCGATGACGGAAATCAAACCGGACATTTTGACGACGAGTTCCCGTACCGAGA 568
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATTAAATTTCGATGACGGGAAGCAAACCGGACATTTTGACGACGAGTTCCCGTACCGAGA 471
Query 569 TTACTCGATGAGATTCGCTGCGCCTTCCTTACCGGTTTCCACTAAATGCTCAATTGATTT 628
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 472 TTACTCGATGAGATTCGCTGCGCCATCGTTACCGGTTTCCACTAAATGCTCAATCGATTT 531
Query 629 CGATAGCGACATTGATA-ACAAGTGAAAGCCACGCGCTCGACTT 671
|||||||||||| ||| | ||||||| | ||||||||||||||
Sbjct 532 CGATAGCGACAT-GATGGATAAGTGAATGTCACGCGCTCGACTT 574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5