BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01440.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477379 jgi|Araly1|477379|fgenesh2_kg.3__80__AT3G01440.1 1118 0.0
> Ahg477379 jgi|Araly1|477379|fgenesh2_kg.3__80__AT3G01440.1
Length=862
Score = 1118 bits (605), Expect = 0.0
Identities = 713/765 (93%), Gaps = 8/765 (1%)
Strand=Plus/Plus
Query 1 ACAAGAACAGAGGCTGACACCTAAAGCTTA--CTCT--CTAACTGCAATGGCTCACTTCA 56
|||||||| | ||||| |||||||||||| |||| |||||| ||||||||||||||
Sbjct 1 ACAAGAACCGGGGCTGGTACCTAAAGCTTACTCTCTAGCTAACTACAATGGCTCACTTCT 60
Query 57 TAGACCTCAACAGTCTCACCAACACTTTACCGTCT-CTTCCGAAACTACCCGAGAGTCGT 115
||||||||||||||||||||||||||| ||||| | || |||||||| |||||| ||||
Sbjct 61 TAGACCTCAACAGTCTCACCAACACTTCACCGT-TGATTACGAAACTATCCGAGAATCGT 119
Query 116 AAAACCGGGAAATCCAGCGGGTTTGCTTGCAGGAGAACTGAAGAATTTCAAGAACCGGAT 175
|||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 120 AAAACCGGGAAATCTGGCGGGTTTGTTTGCAGGAGAAGTGAAGAATTTCAAGAACCGGAT 179
Query 176 TCGGTACAGATCACAAGACGGATGACATTAGGATTTGCTGTCTCAATAGGTCTTACCGGA 235
|| | || ||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 180 TCACTTCATTTCACAAGACGGATGACATTGGGATTTGCTGTCTCGATAGGTCTAACCGGA 239
Query 236 ATTCTCGGCGAAAATAATGTTTCCTTGGCACAAGACAATGGGTTTTGGATTGATGGTCCT 295
||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 240 ATTTTCGGCGAAAATAATGTTTCCTTGGCACAAGACAACGGGTTTTGGATCGATGGCCCT 299
Query 296 CTTCCAATTCCTCCTATTTACAACAATATCGTGAATGAGAAGACGGGAACGAGAACATTC 355
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 CTTCCAATTCCTCCTATTTACAACAATATCGTGAATGAGAAGACGGGAACAAGAACATTC 359
Query 356 ATAAAGAAAGGAGTGTATGTAGCGGATATCGGGACGAAAGGAAGAATGTATAGAGTTAAA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATAAAGAAAGGAGTGTATGTAGCGGATATCGGGACGAAAGGAAGAATGTATAGAGTTAAA 419
Query 416 AAGAATGCTTTTGATCTCTTGGCAATGGAGGATTTGATCGGACCAGATACTTTAAACTAT 475
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGAATGCTTTTGATCTGTTGGCAATGGAGGATTTGATCGGACCAGATACTTTAAACTAT 479
Query 476 GTGAAAAAGTACTTGAGGCTTAAATCCACATTTTTGTTTTACGATTTCGACAATCTCATC 535
|| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||
Sbjct 480 GTTAAAAAGTACTTGAGGCTTAAATCCACCTTTTTGTTCTACGATTTTGACAATCTTATC 539
Query 536 TCTGCTGCTGCCTCTGAAGACAAGCAACCTCTCACTGATTTAGCCAACAGATTGTTCGAC 595
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 TCTGCTGCTGCCTCTGAAGACAAGCAACCTCTCACTGATTTAGCCAACAGGTTGTTCGAC 599
Query 596 AATTTCGAAAAGCTTGAAGATGCAGCTAAGACGAAGAACTTAGCAGAGACGGAATCGTGT 655
||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||
Sbjct 600 AATTTTGAAAAGCTTGAAGATGCAGCTAAGAAGAAGAACTTAGCAGGGACAGAATCATGT 659
Query 656 TATAAAGATACAAAGTTTCTTCTTCAAGAGGTAATGACCAGAATGGCATGATCCTGGTTC 715
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TATAAAGATACAAAGTTTCTTCTTCAAGAGGTAATGACCAGAATGGCATGAACCTGGTTC 719
Query 716 GGTTTAT-ACCGGTTTACTTGCTATTGATGATCCTACATGGTTGA 759
||||| | |||||||||||||||||||| |||| | |||||||||
Sbjct 720 GGTTT-TCACCGGTTTACTTGCTATTGAAGATCATTCATGGTTGA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5