BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01472.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477377 jgi|Araly1|477377|fgenesh2_kg.3__78__AT3G01470.1 1341 0.0
> Ahg477377 jgi|Araly1|477377|fgenesh2_kg.3__78__AT3G01470.1
Length=1263
Score = 1341 bits (726), Expect = 0.0
Identities = 943/1040 (91%), Gaps = 46/1040 (4%)
Strand=Plus/Plus
Query 349 TTTTATTTCTGTTGATCAAAAATGGAATCCAATTCGTTTTTCTTCGATCCATCTGCTTCA 408
||||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TTTTATTTCTGTT-A--ATAAATGGAATCCAATTCGTTTTTCTTCGGTCCATCTGCTTCA 296
Query 409 CACGG---CAACAGCATGTTCTTCCTTGGGAATCTCAATCCCGTCGTCCAAGGAGGAGGA 465
|| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CATGGCAACAACAACATGTTCTTCCTTGGGAATCTCAATCCCGTCGTCCAAGGAGGAGGA 356
Query 466 GCAAGATCGATGATGAACATGGAGGAAACTTCGAAGCGAAGGCCCTTCTTTAGCTCCCCT 525
|||||||| | ||||||||||| || |||||||||||||||||||||||||||
Sbjct 357 GCAAGATC------G---ATGGAGGAAACATCAAAGCGAAGGCCCTTCTTTAGCTCCCCT 407
Query 526 GAGGATCTCTACGACGATGACTTTTACGACGACCAGTTGCCTGAAAAGAAGCGTCGCCTC 585
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 408 GAGGATCTCTACGACGACGACTATTACGACGACCAGTTGCCCGAAAAGAAGCGTCGCCTC 467
Query 586 ACTACCGAACAAGTGCATCTGCTGGAGAAAAGCTTCGAGACAGAGAACAAGCTAGAGCCT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 468 ACTACCGAACAAGTGCATCTGCTGGAGAAAAGCTTCGAGACAGAGAACAAGCTGGAGCCA 527
Query 646 GAACGCAAGACTCAGCTTGCCAAGAAGCTTGGTCTACAGCCAAGGCAAGTGGCTGTCTGG 705
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GACCGCAAGACTCAGCTTGCCAAGAAGCTTGGTCTACAGCCAAGGCAAGTGGCTGTCTGG 587
Query 706 TTTCAGAATCGCCGAGCTCGTTGGAAAACAAAACAGCTTGAGAGAGACTACGATCTTCTC 765
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 588 TTTCAGAATCGCAGAGCTCGTTGGAAAACAAAACAGCTCGAGAGAGACTACGATCTTCTC 647
Query 766 AAGTCCACTTACGACCAACTTCTTTCTAACTACGACTCCATCGTCATGGACAACGATAAG 825
|||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 648 AAGTCCACTTACGATCAACTTCTCTCTAACTACGACTCCATCGTCAAGGACAACGATAAG 707
Query 826 CTCAGATCCGAGGTTACTTCCCTGACCGAAAAGCTTCAGGGCAAACAAGAGACAGCTAAT 885
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 708 CTCAGATCCGAGGTTACTTCCCTGACCGAAAAGCTCCAGGGCAAAGAAGAGACAGCTAAT 767
Query 886 GAACCACCTGGTCAAGTGCCCGAACCAAACCAACTTGATCCGGTTTACATTAATGCGGCA 945
|||||||| |||| ||||||||||||||||||||| ||| |||| ||||| || |||||
Sbjct 768 GAACCACCGGGTCTAGTGCCCGAACCAAACCAACTCGATACGGTATACATAAACCCGGCA 827
Query 946 GCAATCAAAACCGAGGACCGGTTAAGTTCAGGGAGCGTTGGGAGCGCGGTACTAGACGAC 1005
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 828 GCAATCAAAACCGAGGACCGGTTAAGTTCAGGGAGTGTTGGGAGCGCGGTACTAGACGAA 887
Query 1006 GACGCACCTCAACTACTAGACAGCTGTGACTCTTACTTCCCAAGCATCGTACCCATCCAA 1065
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 888 GACGCACCTCAACTACTAGACAGTTGTGACTCTTACTTCCCAAGCATCGTACCCATCCAA 947
Query 1066 GACAACAGCAACGCCAGTGATCATGACAATGACCGGAGCTGTTTCGCCGACGTCTTTGTG 1125
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 948 GACA-C--CAACGCCAGTGATAATGACAATGACCGGAGCTGTTTCGCCGACGTCTTTGTG 1004
Query 1126 CCCACCACTTCACCGTCGCACGATCATCACGGTGAATCATTGGCTTTCTGGGGATGGCCT 1185
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1005 CCCACCACTTCACCGTCGCACGATCA-C--GGTGAATCATTGGCTTTCTGGGGATGGCCT 1061
Query 1186 TAGAAAACCACTCTGATAATAAATGTGTGTTTATTTAAGTTCAAGAGTCATCTTCTTGTT 1245
|| |||| || | | | | ||||| |||||| |||| ||| |||| |||| |||
Sbjct 1062 TA-AAAA--AC-C--A-A-TG--TGTGT-TTTATT-AAGTACAACAGTCGTCTT---GTT 1106
Query 1246 GTTTCCATGTTGACGATAATTGTTGACTCGTGGAATAATTCCGCTGTTCAACGGTATTTT 1305
|||||||||||||||||||| || |||||||||||||||||||| ||||||| |||||||
Sbjct 1107 GTTTCCATGTTGACGATAATCGTGGACTCGTGGAATAATTCCGCAGTTCAACAGTATTTT 1166
Query 1306 TATCAGTTGCATTATATGCTTTTATGAAATCAAGT-CAATGCAGTGTTCTGATTTGAAGT 1364
||| | | | || |||| | | | | | || ||||||||||||| | ||| ||||
Sbjct 1167 TAT-A-T-G--TT-TATGAAATCACGTCCT-A-GTTCAATGCAGTGTTCAGTTTTAAAGT 1218
Query 1365 TAAAAAGATTGATCTTCTTC 1384
| ||| ||||||||||||||
Sbjct 1219 TGAAA-GATTGATCTTCTTC 1237
Score = 204 bits (110), Expect = 2e-51
Identities = 212/257 (82%), Gaps = 24/257 (9%)
Strand=Plus/Plus
Query 4 ACGCTCACATTGCAAAAACAAAACCAACAAGGAACTTGtctctctctctggctctctttc 63
|||||| |||||||| |||||||||||||||||||| ||||||||||||| | | |
Sbjct 1 ACGCTCGCATTGCAAGTACAAAACCAACAAGGAACTTCTCTCTCTCTCTGGAT-T-ATGA 58
Query 64 tctTAACGTGATCATAACGTG-ATTCGAAAATTGG-ATATAGAT-AGGTTTCTTGTTGGA 120
|| | | |||| | || | ||| |||||||| | |||||| ||||||||| |||||
Sbjct 59 TC-TGA-TTGAT--TGGCGGGTTTTCCAAAATTGGAAAATAGATAAGGTTTCTTCTTGGA 114
Query 121 ---TCTTGATCCCTCTGGAAAAGGAGGGGAGAATAGCAGTTCATGATGGGATTTTGTATC 177
||||||||||||||| || ||| || | | | ||||||||||||||||||
Sbjct 115 TCTTCTTGATCCCTCTGGTAACGGA--GG-G----G-A----ATGATGGGATTTTGTATC 162
Query 178 TGCCCGTTGGAGTCACCTGCGAGATTACTATGGAGTACAAGCTTCTTCCGCCATAAGATC 237
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 163 TGCCCGTTGGAGTCACCGGCGAGATTACTATGGAGTACAAGCTTCTTCCGTCATAAGATC 222
Query 238 ATGATCTTCTAATCCTT 254
|||||||||||||||||
Sbjct 223 ATGATCTTCTAATCCTT 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5