BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01480.1
Length=1676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477375 jgi|Araly1|477375|fgenesh2_kg.3__76__AT3G01480.1 2305 0.0
> Ahg477375 jgi|Araly1|477375|fgenesh2_kg.3__76__AT3G01480.1
Length=1574
Score = 2305 bits (1248), Expect = 0.0
Identities = 1448/1542 (94%), Gaps = 23/1542 (1%)
Strand=Plus/Plus
Query 56 TTTCTCATGTTCTTTTCGGACAGAAC-AAAACTCCCTAATCCAAATGTCAATTCCTTTGG 114
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 23 TTTCTCATGTTCTTTTCGGACAGAACAAAAACTCCCTAATCC-AATGTCAATTCCTTTGG 81
Query 115 TCTCTCTCTGAATAATCATCTCTCTTCAAACCC-TATTCAATTTTAACTATCGATCTTCG 173
||| |||||||| |||||||||||| ||||||| | |||||||||||| | | ||
Sbjct 82 TCTGTCTCTGAAAAATCATCTCTCTCCAAACCCTTTTTCAATTTTAAC--T--A---TC- 133
Query 174 GCTAAGTCTCCAATGGCGGCGGCGTTTGCCTCTCTTCCCACATTTAGTGTCGTCAATTCC 233
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 G---A-TCTCCAATGGCGGCGGCGTTTGCCTCTCTTCCCACATTTAGTGTCGTCAATTCC 189
Query 234 TCCAGATTTCCCAGAAGAAGAATCGGTTTTTCTTGCTCCAAAAAGCCCCTCGAAGTTCGT 293
||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||
Sbjct 190 TCCAGATTTCCCAGAAGAAGAATCGATTTTTCTTGCTCCAAAAAACCCCTCCAAGTTCGT 249
Query 294 TGTTCTTCCGGCAATACTCGTTACACTAAGCAGAGAGGGGCATTTACATCACTGAAAGAA 353
| || ||||||||| |||||| | | ||||||||||||| ||||| ||||| ||||||||
Sbjct 250 TCTTGTTCCGGCAACACTCGTGAAAATAAGCAGAGAGGGACATTTGCATCATTGAAAGAA 309
Query 354 TGTGCGATTTCATTAGCTTTATCGGTTGGTTTAATGGTTTCAGTACCTTCGATTGCTTTG 413
||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |
Sbjct 310 TGTGCCATTTCATTAGCTTTATCGGTTGGTTTAATAGCTTCAGTACCTTCGATTGCTTCG 369
Query 414 CCTCCCAATGCTCACGCAGTGGCGAATCCAGTGATTCCAGATGTTTCAGTGTTGATCTCC 473
|||||||||||| |||||||| ||||||||| ||||||||||||||| |||||||||||
Sbjct 370 CCTCCCAATGCTTACGCAGTGACGAATCCAGCGATTCCAGATGTTTCGGTGTTGATCTCT 429
Query 474 GGTCCTCCGATTAAAGATCCGGAAGCTTTACTAAGATATGCATTGCCTATTGACAACAAA 533
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 430 GGTCCTCCGATTAAAGATCCAGAAGCTTTACTAAGATATGCATTGCCTATTGACAATAAA 489
Query 534 GCCATCAGGGAAGTGCAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGC 593
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GCCATCAGAGAAGTACAGAAGCCTCTTGAGGATATCACTGATAGCCTCAAGATTGCTGGC 549
Query 594 GTTAAGGCTCTAGATTCTGTTGAACGGAATGTGAGGCAGGCAAGTAGAACATTGCAGCAA 653
||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 550 GTTAAGGCTCTCGATTCTGTTGAACGGAATGTGAGGCAGGCAAATAGATCATTGCAGCAA 609
Query 654 GGGAAAAGTATAATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATG 713
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GGGAAAACTATGATTGTGGCAGGTTTTGCTGAATCGAAGAAGGATCATGGTAATGAAATG 669
Query 714 ATTGAAAAGTTGGAAGCTGGGATGCAAGATATGCTTAAGATAGTGGAAGATCGAAAAAGA 773
|| ||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 670 ATCGAAAAGTTGGAAGCTGGTATGCAAGATATGCTAAAGATTGTGGAAGATCGTAAAAGA 729
Query 774 GACGCAGTTGCTCCAAAACAGAAAGAAATTCTCAAATATGTTGGCGGAATAGAAGAGGAT 833
|| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GATGCGGTTGCTTCAAAACAGAAAGAAATTCTCAAATATGTTGGCGGAATAGAAGAGGAT 789
Query 834 ATGGTTGATGGCTTTCCATATGAAGTGCCGGAAGAGTATCGGAACATGCCTCTCCTCAAG 893
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 790 ATGGTTGATGGCTTCCCATATGAAGTGCCGGAAGAGTATCGGAACATGCCTCTTCTCAAA 849
Query 894 GGAAGAGCTAGTGTGGACATGAAGGTCAAGATCAAGGACAATCCCAACATCGAGGACTGT 953
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 GGAAGAGCCAGTGTGGACATGAAGGTCAAGATCAAGGACAATCCCAACATCGAGGACTGT 909
Query 954 GTGTTCCGCATTGTTCTTGATGGTTATAACGCCCCTGTTACCGCCGGAAACTTTGTGGAC 1013
||||||||||||||||||||||||||||||||||||||||| || || || |||||||||
Sbjct 910 GTGTTCCGCATTGTTCTTGATGGTTATAACGCCCCTGTTACTGCGGGGAATTTTGTGGAC 969
Query 1014 TTGGTAGAGAGGCATTTCTACGATGGCATGGAGATCCAGAGATCTGATGGATTTGTGGTA 1073
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 970 TTGGTAGAGCGGCATTTCTATGATGGCATGGAGATCCAGAGATCTGATGGATTTGTGGTA 1029
Query 1074 CAAACGGGAGATCCAGAGGGTCCTGCGGAAGGATTTATCGATCCAAGCACAGAGAAAACG 1133
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CAAACAGGAGATCCAGAGGGTCCTGCGGAAGGATTTATCGATCCAAGCACAGAGAAAACG 1089
Query 1134 AGGACGGTTCCTCTAGAGATTATGGTGACTGGAGAGAAAACGCCTTTTTACGGCTCAACT 1193
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1090 CGGACGGTTCCTCTAGAGATTATGGTGACTGGAAAGAAAACGCCTTTTTACGGCTCAACT 1149
Query 1194 CTTGAAGAACTTGGTCTTTACAAGGCTCAGGTTGTGATTCCTTTCAACGCTTTTGGGACA 1253
||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1150 CTTGAAGAACTGGGTCTTTACAAGGCTCAGGTTGTGCTTCCTTTCAACGCATTTGGGACA 1209
Query 1254 ATGGCAATGGCAAGAGAAGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 ATGGCAATGGCAAGAGAAGAGTTTGAGAATGACTCAGGATCAAGCCAAGTGTTTTGGCTG 1269
Query 1314 CTAAAAGAGAGTGAGCTGACACCAAGCAATTCCAACATCTTGGATGGTCGTTACGCTGTC 1373
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1270 CTAAAAGAGAGCGAGCTGACTCCAAGCAATTCCAACATCTTGGACGGTCGTTACGCTGTC 1329
Query 1374 TTTGGTTACGTTACTGATAACGAAGATTTTCTAGCTGATCTTAAAGTTGGTGATGTTATC 1433
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1330 TTTGGTTACGTTACTGACAACGAAGATTTTCTTGCTGATCTTAAAGTTGGTGATGTTATT 1389
Query 1434 GAATCCATTCAAGTTGTCTCCGGTTTAGAGAACCTCGCTAACCCGAGTTACAAAATCGCC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 GAATCCATTCAAGTTGTCTCCGGTTTAGAGAACCTCGCTAACCCGAGTTACAAAATCGCC 1449
Query 1494 GGTTAACTCCTCTTATCTTTTTCCTTTTCTTGGTTC---GTAATTAATACTCTGTTTATT 1550
|||||||| | ||||| ||| |||||||||||||| |||| ||||||||||||||||
Sbjct 1450 GGTTAACTTCGCTTATATTTC-CCTTTTCTTGGTTCATAGTAAGTAATACTCTGTTTATT 1508
Query 1551 TT-AATTTTGTGAGAGTATATT-AAA-GGTGCATGTCTTTTT 1589
|| ||||||||||||||| ||| ||| ||||||| ||||||
Sbjct 1509 TTTAATTTTGTGAGAGTA-ATTTAAAAGGTGCATCACTTTTT 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62848904250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5