BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01490.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902937 jgi|Araly1|902937|Al_scaffold_0003_65 2050 0.0
> Ahg902937 jgi|Araly1|902937|Al_scaffold_0003_65
Length=1236
Score = 2050 bits (1110), Expect = 0.0
Identities = 1194/1236 (97%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 280 ATGAAGGAGAAGGCGGAGAGTGGTGGAGGAGTAGGATACGTGAGAGCAGATCAGATAGAT 339
|||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGAAGGAGAAGTCGGAGAGTGGCGGAGGAGTAGGTTACGTGAGAGCAGATCAGATAGAT 60
Query 340 TTAAAGAGTCTGGACGAGCAATTGCAGAGACACTTAAGTAAAGCATGGACGATGGAGAAG 399
|| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTGAAGAGTCTGGACGAGCAACTGCAGAGACACTTAAGCAAAGCATGGACGATGGAGAAG 120
Query 400 AGGAAGAGTTTGAGTGATGGTGAAGATAACGTCAATAACACCCGACATAACCAGAACAAC 459
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 AGGAAGAGTTTGAGTGATGGTGAAGACAACGTCAATAACACCCGACATAACCAGAACAAC 180
Query 460 TTCGGACATCGACAGCTTGTGTTTCAGAGGCCGCTTCTTGGTGGTGGATATAGCAACAAC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCGGACATCGACAGCTTGTGTTTCAGAGGCCGCTTCTTGGTGGTGGATATAGCAACAAC 240
Query 520 AACAACAGCAGCAAGAACGACATAATTAGGTCGACCGAGGTTGAGAAGTCGAGGAGAGAG 579
||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 241 AACAACAACAGCAAGAACGACATAATTAGGTCGACCGAGGTTGGGAGGTCGAGAAGAGAG 300
Query 580 TGGGAGATTGATCCTTCTAAGCTTATAATCAAAAGTGTGATTGCTAGAGGTACTTTTGGT 639
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGGAAATTGATCCTTCTAAGCTTATAATCAAAAGTGTGATTGCTAGAGGTACTTTTGGT 360
Query 640 ACGGTTCACCGTGGAATCTACGATGGTCAAGATGTCGCCGTAAAACTACTAGACTGGGGA 699
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 ACGGTGCACCGTGGAATCTACGATGGTCAAGATGTCGCCGTGAAACTACTAGACTGGGGA 420
Query 700 GAAGAGGGGCACAGGTCAGACGCAGAGATAGCTTCGCTTAGAGCTGCTTTCACTCAAGAA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGAGGGGCACAGGTCAGACGCAGAGATAGCTTCGCTTAGAGCTGCTTTCACTCAAGAA 480
Query 760 GTTGCTGTGTGGCATAAGCTCGACCATCCCAATGTCACCAAGTTCATAGGAGCGGCGATG 819
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTGCTGTTTGGCATAAGCTTGACCATCCCAATGTCACCAAGTTCATAGGAGCGGCGATG 540
Query 820 GGGACATCGGAGATGAGCATACAAACGGAAAACGGGCAAATGGGAATGCCGAGTAACGTT 879
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 GGGACATCGGAGATGAGCATACAAACGGAAAACGGGCAGATGGGAATGCCGAGTAACGTT 600
Query 880 TGCTGTGTCGTGGTTGAGTATTGCCCCGGCGGCGCTCTCAAGTCATTCCTCATCAAAACT 939
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 TGCTGCGTCGTGGTTGAGTATTGCCCCGGCGGCGCTCTCAAGTCTTTCCTCATCAAAACT 660
Query 940 CGCCGCCGCAAACTCGCCTTCAAAGTCGTTATCCAACTCTCCCTTGATCTTGCTCGCGGG 999
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 CGCCGCCGCAAACTCGCTTTCAAAGTTGTTATCCAACTCTCCCTTGATCTTGCTCGCGGG 720
Query 1000 TTGAGTTACTTGCACTCTCAGAAGATTGTGCATAGAGACGTGAAAACGGAGAACATGCTT 1059
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTAAGTTATTTGCACTCTCAGAAGATTGTGCATAGAGACGTGAAAACGGAGAACATGCTT 780
Query 1060 TTAGATAAGTCACGCACCTTAAAGATTGCAGATTTTGGTGTGGCTCGTCTAGAGGCTTCA 1119
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 TTAGACAAGTCACGCACCTTAAAGATTGCAGATTTTGGTGTGGCTCGTCTCGAGGCTTCA 840
Query 1120 AACCCTAACGACATGACCGGTGAGACCGGAACCTTGGGCTATATGGCTCCTGAGGTGCTA 1179
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 841 AACCCTAACGACATGACCGGTGAGACCGGAACCTTGGGCTACATGGCTCCAGAGGTGCTA 900
Query 1180 AACGGGAGTCCCTACAACAGAAAGTGCGATGTGTATAGCTTTGGGATATGTCTTTGGGAG 1239
|| |||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 901 AATGGGAGTCCGTACAACAGAAAATGCGATGTGTATAGCTTTGGGATATGCCTGTGGGAG 960
Query 1240 ATTTACTGTTGCGACATGCCTTATCCTGACCTCAGCTTCTCCGAAGTAACCTCCGCCGTC 1299
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 961 ATTTACTGTTGCGACATGCCATATCCTGACCTTAGCTTCTCCGAAGTCACCTCCGCCGTC 1020
Query 1300 GTCCGCCAGAATTTGAGACCAGAGATACCTAGATGTTGTCCAAGCTCGCTGGCGAACGTG 1359
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1021 GTCCGCCAGAATTTGAGACCGGAGATACCTAGATGTTGTCCAAGCTCCCTGGCGAACGTA 1080
Query 1360 ATGAAGAGGTGTTGGGATGCGAATCCGGAGAAGCGGCCGGAGATGGAGGAAGTTGTGGCT 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1081 ATGAAGAGGTGTTGGGATGCGAATCCGGAGAAGCGGCCGGAGATGGAGGAAGTGGTGGCG 1140
Query 1420 ATGTTGGAGGCTATTGATACTTCCAAAGGCGGAGGAATGATTCCTCCTGACCAACAACAA 1479
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1141 ATGTTGGAGGCTATTGATACTTCTAAAGGCGGAGGAATGATACCTCCTGACCAACAACAA 1200
Query 1480 GGCTGTTTCTGTTTCCGCCGACACCGAGGCCCATGA 1515
||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGCTGTTTCTGTTTCCGCCGACACCGAGGCCCATGA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5