BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01500.2
Length=1319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477371 jgi|Araly1|477371|fgenesh2_kg.3__72__AT3G01500.2 2169 0.0
Ahg488319 jgi|Araly1|488319|fgenesh2_kg.6__1453__AT5G14740.2 778 0.0
> Ahg477371 jgi|Araly1|477371|fgenesh2_kg.3__72__AT3G01500.2
Length=1314
Score = 2169 bits (1174), Expect = 0.0
Identities = 1273/1320 (96%), Gaps = 9/1320 (1%)
Strand=Plus/Plus
Query 1 ATGAGACTCCGTTCTTTTAAACTCCCAAATCTTTCAACCAATCCCATTATTCACTTAAGT 60
|||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGACTCCATTCTTTTAAACTCTCAAATCTTTCAACCAATCCCATAATTCACTTAAGT 60
Query 61 ATATAGTAGCTTCCATAAGAG-TCTTAGTTCTAACTATAAATACACAT-ATCTCACTCTC 118
||||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||
Sbjct 61 ATATAGTAGCTTCCACAAGAGATCTTAGTTATAACTATAAATACAC-TGATCTCACTCTC 119
Query 119 TCTGATCTCCGCTTCTCTTCGCCAACAAATGTCGACCGctcctctctccggcttctttct 178
||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 120 ACTGATCTCCACTTCTCTTCACCAGCAAATGTCGACCGCTCCTCTCTCCGGCTTCTTCCT 179
Query 179 cacttcactttctccttctcaatcttctctccagaaactctctcttcgtacttcttcCAC 238
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CACTTCCCTTTCTCCTTCTCAATCTTCTCTCCAGAAACTCTCTCTTCGTACTTCTTCCAC 239
Query 239 CGTCGCTTGCCTCCCAC-CCGCCTCTTCTTCTTCCTCATCTTCCTCCTCCTCGTCTTCCC 297
||||||||||||||| | || ||||||||||||||||| |||||||||||||||||||
Sbjct 240 CGTCGCTTGCCTCCC-CTCCTCCTCTTCTTCTTCCTCA---TCCTCCTCCTCGTCTTCCC 295
Query 298 GTTCCGTTCCAACGCTTATCCGTAACGAGCCAGTTTTTGCCGCTCCTGCTCCTATCATTG 357
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 296 GTTCCGTTCCAACCCTTATCCGTAACGAGCCCGTTTTTGCCGCTCCTGCTCCTATCATTG 355
Query 358 CCCCTTATTGGAGTGAAGAGATGGGAACCGAAGCATACGACGAGGCTATTGAAGCTCTCA 417
||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 356 CCCCTTATTGGAGCGAAGAGATGGGAAGCGACGCATACGAAGAGGCTATTGAAGCTCTCA 415
Query 418 AGAAGCTTCTCATCGAGAAGGAAGAGCTAAAGACGGTTGCAGCGGCAAAGGTGGAGCAGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AGAAGCTTCTCATCGAGAAGGAAGAGCTAAAGACGGTTGCAGCGGCAAAGGTGGAGCAGA 475
Query 478 TCACAGCGGCTCTTCAGACAGGTACTTCATCCGACAAGAAAGCTTTCGACCCCGTCGAAA 537
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 476 TCACGGCGGCGCTTCAGACAGGTACTTCGTCCGACAAGAAAGCTTTCGACCCCGTTGAAA 535
Query 538 CCATTAAGCAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ACATTAAGCAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGT 595
Query 598 ACGGTGAGCTCGCAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCTTGTTCAGACTCAC 657
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 596 ACGGTGAGCTCGCAAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCGTGTTCGGACTCAC 655
Query 658 GTGTGTGTCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACA 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTGTGTGTCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACA 715
Query 718 TAGCCAACATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TAGCCAACATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTG 775
Query 778 AATACGCGGTCTTACACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTG 837
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AATACGCGGTCTTGCACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTG 835
Query 838 GTGGGATCAAAGGGCTTATGTCTTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GTGGGATCAAAGGGCTTATGTCTTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAG 895
Query 898 AGGACTGGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGATT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AGGACTGGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGATT 955
Query 958 CAGCCTTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCGGTGAATGTTTCACTAGCAA 1017
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 956 CAGCCTTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCAGTGAATGTTTCATTAGCAA 1015
Query 1018 ACCTATTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACCTATTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGG 1075
Query 1078 GAGGCTACTATGACTTCGTCAAGGGTGCTTTTGAGCTTTGGGGACTTGAATTTGGCCTCT 1137
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 GAGGCTACTATGACTTCATTAAGGGTGCTTTTGAGCTTTGGGGACTTGAATTTGGCCTCT 1135
Query 1138 CCGAAACTAGCTCTGTTAAAGATGTGGCTACCATACTACATTGGAAGCTGTAGGAAACTC 1197
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1136 CCGAAACTAGCTCTGTGAAAGATGTGGCTACCATACTACATTGGAAGCTGTAGGAA-CTC 1194
Query 1198 TTTGAAGCCTTACCCGATTTCACATTGTCAATTCAATAACACCAAGTTGTTGTTTACATG 1257
|||||||||||||||||||||||||| ||||||||||||||||||||| || ||| ||||
Sbjct 1195 TTTGAAGCCTTACCCGATTTCACATTTTCAATTCAATAACACCAAGTTATTCTTTTCATG 1254
Query 1258 CAGATCTTGATGAAACTGGTTTTTGATTTTACAGAATTAAAATCTTGGGGGACAGAAATT 1317
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1255 TAGATCTTGATGAAAGTGGTTTTTGATTTTACAGAATTAAAATCTTGGGGGACAAAAATT 1314
> Ahg488319 jgi|Araly1|488319|fgenesh2_kg.6__1453__AT5G14740.2
Length=1407
Score = 778 bits (421), Expect = 0.0
Identities = 652/762 (86%), Gaps = 21/762 (3%)
Strand=Plus/Plus
Query 372 GAAGAGATGGGAACCGAAGCATACGACGAGGCTATTGAAGCTCTCAAGAAGCTTCTCATC 431
|||| |||||||| |||| |||| || || || || |||||||||||||||||||||||
Sbjct 401 GAAG-GATGGGAAACGAATCATATGAAGACGCCATCGAAGCTCTCAAGAAGCTTCTCATT 459
Query 432 GAGAAGGAAGAGCT-AAAGACGGTTGCAGCGG-CAAAGGTGGAGCAGATCACAGCGGCTC 489
|||||||| ||||| || || || || |||| |||| ||| | ||||||| |||| |
Sbjct 460 GAGAAGGATGAGCTGAAGGA-TGTAGCTGCGGCCAAA-GTGAAAAAGATCACCGCGGAGC 517
Query 490 TTCAGACAGGTACT--TCATCCGACAAGAAAG-CTTTCGACCCCGTCGAAAC-CATTAAG 545
|||||||| || || || |||||||| ||| ||||||| ||||||| ||| ||||||
Sbjct 518 TTCAGACA-GT-CTCGTCGTCCGACAA-CAAGTCTTTCGATCCCGTCG-AACGAATTAAG 573
Query 546 CAGGGCTTCATCAAATTCAAGAAGGAGAAATACGAAACCAACCCTGCTTTGTACGGTGAG 605
| |||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 574 GAAGGCTTCGTCACCTTCAAGAAGGAGAAATACGAGACCAATCCTGCTTTGTACGGTGAG 633
Query 606 CTCGC-AAAGGGTCAAAGTCCTAAGTACATGGTGTTTGCTTGTTCAGACTCACGTGTGTG 664
||||| ||| |||||||| || ||||||||||||||||||||||| ||||| || |||||
Sbjct 634 CTCGCTAAA-GGTCAAAGCCCAAAGTACATGGTGTTTGCTTGTTCGGACTCGCGAGTGTG 692
Query 665 TCCATCACACGTTCTGGACTTTCAGCCAGGAGATGCCTTCGTGGTCCGTAACATAGCCAA 724
|||||||| || || |||| || || ||||||||||||||||| ||||| || |||||
Sbjct 693 CCCATCACATGTACTAAACTTCCATCCTGGAGATGCCTTCGTGGTTCGTAATATCGCCAA 752
Query 725 CATGGTTCCTCCTTTCGACAAGGTCAAATACGGTGGCGTTGGAGCAGCCATTGAATACGC 784
|||||||||||||| |||||||||||||| | || |||||||| ||||||||||| ||
Sbjct 753 TATGGTTCCTCCTTTTGACAAGGTCAAATATGCAGGAGTTGGAGCCGCCATTGAATATGC 812
Query 785 GGTCTTACACCTTAAGGTGGAGAACATTGTGGTGATAGGACACAGTGCATGTGGTGGGAT 844
||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 813 TGTCTTGCACCTTAAGGTGGAAAACATTGTGGTGATAGGGCACAGTGCATGTGGTGGCAT 872
Query 845 CAAAGGGCTTATGTC-TTTCCCCTTAGATGGAAACAACTCCACTGACTTCATAGAGGACT 903
||| ||||||||||| ||||| ||| || ||||||||||| ||||| ||||||||||| |
Sbjct 873 CAAGGGGCTTATGTCATTTCCTCTT-GACGGAAACAACTCTACTGATTTCATAGAGGATT 931
Query 904 GGGTCAAAATCTGTTTACCAGCCAAGTCAAAGGTTATATCAGAACTTGGAGA-TTCAGCC 962
|||| ||||||||||||||||| |||||||| ||| | ||||| | || | ||||||
Sbjct 932 GGGTGAAAATCTGTTTACCAGCAAAGTCAAAAGTTTTGGCAGAAAGT-GAAAGTTCAGCA 990
Query 963 TTTGAAGATCAATGTGGCCGATGTGAAAGGGAGGCGGTGAATGTTTCACTAGCAAACCTA 1022
||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 991 TTTGAGGACCAATGTGGCCGATGCGAAAGGGAGGCAGTGAATGTATCACTAGCAAACCTA 1050
Query 1023 TTGACATATCCATTTGTGAGAGAAGGACTTGTGAAGGGAACACTTGCTTTGAAGGGAGGC 1082
||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 1051 TTGACATATCCATTTGTGAGAGAAGGAGTCGTGAAAGGAACACTTGCTTTGAAGGGAGGC 1110
Query 1083 TACTATGACTTCGTCAAGGG-TGCTTTTGAGCTTTGGGGACT 1123
|||||||| || || || || | |||| |||||||||| |||
Sbjct 1111 TACTATGATTTTGTTAATGGCTCCTTT-GAGCTTTGGGAACT 1151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49331054598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5