BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01510.1
Length=2012
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340294 jgi|Araly1|340294|fgenesh1_pg.C_scaffold_3000057 2939 0.0
> Ahg340294 jgi|Araly1|340294|fgenesh1_pg.C_scaffold_3000057
Length=2298
Score = 2939 bits (1591), Expect = 0.0
Identities = 1734/1803 (96%), Gaps = 10/1803 (1%)
Strand=Plus/Plus
Query 37 AAAAATCTCTATTGGATCGGTTTAATGGCGTTTCTTCAACAAATCTCCGGTTTAGGAGCT 96
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 503 AAAAATCTCTATTGGATCGGTTT-ATGGCGTTTCTTCAACAAATCTCCGGTTTAGGAGCT 561
Query 97 CTCGAACGATCTTGTCCGTCAATTATGATCGGATCTTCATTCCGGAGCGGTAATGGCCGT 156
||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 562 CTCGAACGATCTTCTCCGTCAATTTTGAACGGATCTTCATTCCGGAGCGGTAATGGCCGT 621
Query 157 GTATTCGACGGAAGAGGAATTGCGTACTTGGGTTCGAGGGAAAA-GTTCGGATTCAACAG 215
|||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 622 CTATTCGACGGAAGAGGAATTGCGTACTTGGGTTCCAGGGAAAACG-TCGGATTCAACAG 680
Query 216 ACGAAGAAGAGTCGTTCTTAGAGTTGTTGCGATGTCGTCTTCTTCTA-CTCCGTTCAAAA 274
|||||| ||| ||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 681 ACGAAGCAGACTCGTTCTTAGAGTTGTTGCGATGTCTTCTTCTTC-ATCTCCGTTCAAAA 739
Query 275 TGAATTTGAATGAGTATATGGTCACTCTCGAGAAGCCCCTCGGGATTCGCTTCGCACTTT 334
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 740 TGAATTTGAATGAGTATATGGTCACTCTTGAGAAGCCTCTCGGGATTCGCTTCGCACTTT 799
Query 335 CAGCAGATGGCAAGATCTTCGTCCACGCCATCAAAAAAGGGAGCAATGCGGAGAAGGCGA 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CAGCAGATGGCAAGATCTTCGTCCACGCCATCAAAAAAGGGAGCAATGCGGAGAAGGCGA 859
Query 395 GAATCATCATGGTAGGAGATACACTCAAGAAGGCTAGTGATTCTTCTGGTGGTACTCTTG 454
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 860 GAATCATCATGGTAGGAGATACACTCAAGAAGGCTAGTGATTCTTCTGGTGGTAGTCTTG 919
Query 455 TGGAAATCAAGGATTTTGGTGATACCAAGAAGATGCTGGTAGAGAAAACTGGATCCTTTA 514
||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 920 TGGAAATCAGGGATTTTGGTGATACCGAGAAGATGCTGGTAGAGAAAACAGGATCCTTTA 979
Query 515 GCCTTGTTCTTGAAAGACCATTCTCTCCCTTTCCCATTCAGTATCTGCTTCATTTGAGCG 574
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 980 GCCTTGTTCTTGAAAGACCTTTCTCTCCCTTTCCAATTCAGTATCTGCTTCATTTGAGCG 1039
Query 575 ACCTTGATTTGCTCTATAACAGAGGGCGTGTGTCTTTTGTTACTTGGAACAAAAACCTCT 634
|||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 1040 ACCTTGATATGCTCTATAACAGAGGGCGTGTCTCCTTTGTTACTTGGAACAGAAACCTCT 1099
Query 635 TATCATCGAATCTCAGAGCATCATCACAAGGCAGTGGTAACTCTGGCTATGCTGCGTTTT 694
|||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||
Sbjct 1100 TATCATCGAATCTCAGAGCATC-TCA-A-GGCAGTGGGAACTCTGGCTATGCTGCATTTT 1156
Query 695 CCTCCAAATTCTTTACTCCTCAGGGATGGAAACTTTTGAATAGACAGAGCAATTCCTTTC 754
||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1157 CCTCCAAATTCTTTACTTCTCAGGGATGGAAACTTTTGACTAGACACAGCAATTCCTTTC 1216
Query 755 AGTCAGGGACTA-AGAAGAACATTCTTTCTCCACCTATCAGTCCACTGGTCTCTGTCTTT 813
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 AGTCAGGGAC-ACAGAAGAACATTCTTTCTCCACCTATCAGTCCACTGGTCTCTGTCTTT 1275
Query 814 TCAGAAGATGTTCCTGGAGATGGGGAATGGGGTTATGGGAATTTCCCTTTAGAGGAATAC 873
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1276 TCTGAAGAAGTTCCTGGAGATGGTGAATGGGGTTATGGGAATTTCCCTTTAGAGGAATAC 1335
Query 874 ATCAAAGCCCTTGACCGTTCTAAAGGAGAGCTTTCTTATAACCATGCTCTTGGAATGCGC 933
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 1336 ATCAAAGCCCTTGACCGATCAAAAGGAGAGCTTTCCTATAACCATGCTCTTGGAATGCGC 1395
Query 934 TACAGTAAGATTACAGAGCAAATATATGTTGGCTCTTGCATACAAACAGAAGAGGATGTG 993
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1396 TACAGTAAGATTACAGAGCAAATATATGTTGGCTCTTGCATACAAACAGAAGAGAATGTG 1455
Query 994 GAAAACTTGTCGGAAGCTGGAATTACTGCCATACTAAATTTCCAAGGTGGAACTGAAGCT 1053
||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1456 GAAAATTTGTCAGAAGCTGGAATCACTGCCATACTGAATTTCCAAGGTGGAACTGAAGCT 1515
Query 1054 CAAAACTGGGGGATCGATTCACAAAGTATCAATGATGCATGCCAGAAATCTGAAGTCTTA 1113
||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1516 CAAAACTGGGGAATCTATTCACAAAAAATCAATGATGCATGCCAGAAATCTGAAGTCTTA 1575
Query 1114 ATGATCAACTACCCTATAAAGGATGCAGATTCCTTTGATCTTAGGAAGAAGCTACCACTT 1173
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1576 ATGATCAACTACCCTATAAAGGATGCAGATTCCTTTGATCTTAGGAAGAAACTACCACTT 1635
Query 1174 TGTGTTGGGCTCTTACTACGGTTACTGAAAAAGAACCATCGTGTCTTTGTAACTTGTACC 1233
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1636 TGTGTTGGGCTCTTACTGCGGTTGCTTAAAAAGAACCATCGTGTCTTTGTAACTTGTACC 1695
Query 1234 ACTGGTTTTGACCGGTCATCCGCTTGTGTGATTGCTTATCTGCACTGGATGACTGATACC 1293
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1696 ACTGGTTTTGACCGGTCATCGGCTTGTGTGATTGCTTATCTGCACTGGATGACTGATACC 1755
Query 1294 TCTCTTCATGCTGCTTATAGTTTCGTTACTGGATTGCACGCTTGCAAACCTGACAGACCT 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1756 TCTCTTCATGCTGCTTATAGTTTCGTTACTGGATTGCACGCTTGCAAACCTGACAGACCT 1815
Query 1354 GCAATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGG 1413
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1816 GCAATTGCCTGGGCAACATGGGATCTTATTGCAATGGTGGACGATGGCAAACATGATGGG 1875
Query 1414 ACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGGGGGAGGAGGTATTGTTG 1473
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1876 ACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGGGGGAGGATGTATTGTTG 1935
Query 1474 GTTGGGGATTTCACAGGAAATTGGAAAGAACCGATAAAAGCAACGCACAAAGGCGGTCCA 1533
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1936 GTTGGGGATTTCACAGGAAACTGGAAAGAACCCATAAAAGCAACGCACAAAGGCGGTCCA 1995
Query 1534 CGTTTTGAAACTGAAGTTAGACTTACACAGGGAAAATACTACTACAAGTACATAATCAAC 1593
|| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1996 CGATTTGAAACTGAAGTTAGACTTTCACAAGGAAAATACTACTACAAGTACATAATCAAC 2055
Query 1594 GGTGATTGGAGGCATTCAGCAACTTCACCAACGGAAAGAGATGACCGAGGAAACACGAAC 1653
|||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 2056 GGTGATTGGAGGCATTCAACAACCTCACCAACGGAAAGGGATGACCGAGGAAACACGAAC 2115
Query 1654 AATATAATTGTAGTTGGTGATGTTGCTAACGTCAGGCCTACAATTCAACAACCAAGAAAG 1713
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2116 AATATAATTGTAGTTGGTGATGTTGCTAACGTCAGGCCTACTATTCAACAGCCAAGAAAG 2175
Query 1714 GATGCAAATATCATAAAGGTGATCGAGAGAGTGTTAACAGAGAGCGAAAGATTTAGGCTG 1773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2176 GATGCAAATATCATAAAGGTGATCGAGAGAGTGTTAACAGAGAGCGAAAGATTTAGGCTG 2235
Query 1774 GCGAAAGCAGCTCGGTGTATCGCATTCTCAGTTTGTCCAATAAGACTATGCCCAAAGTCG 1833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2236 GCGAAAGCAGCTCGGTGTATCGCATTCTCAGTTTGTCCAATAAGACTATGCCCAAAGTCG 2295
Query 1834 TAG 1836
|||
Sbjct 2296 TAG 2298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75647226570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5