BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01516.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477367 jgi|Araly1|477367|fgenesh2_kg.3__68__AT3G01516.1 933 0.0
> Ahg477367 jgi|Araly1|477367|fgenesh2_kg.3__68__AT3G01516.1
Length=676
Score = 933 bits (505), Expect = 0.0
Identities = 628/685 (92%), Gaps = 17/685 (2%)
Strand=Plus/Plus
Query 10 ATAGGAGTGTGATGTAT-T-TATAT---AAGTTAGTAAGCTTTGTTCTCTTTCTCTAttt 64
||||||||||||||||| | ||||| |||||||||||||||||| ||||||||| |||
Sbjct 1 ATAGGAGTGTGATGTATATATATATAAGAAGTTAGTAAGCTTTGTTTTCTTTCTCT-TTT 59
Query 65 ttttGGCAGGTATATAAAATTT-TAAAATGGAGGAGGAAAACCAAAAGTCGCATCGAGTT 123
|||||||||| ||| |||||| ||||||||| |||||||||||||| |||||||||||
Sbjct 60 CTTTGGCAGGTTTAT-AAATTTAAAAAATGGAGAAGGAAAACCAAAAGCCGCATCGAGTT 118
Query 124 TCACGTAAAGACCAGAGTGGATCCCACTGGAGTCAAGGAGCCGATGAAGAGCCGAGAGCC 183
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 119 TCACGTAAAGACCAGAGTGGATCCCACTGGAGTCAAGGAGCCGATGAAGAGCCAAGAGCC 178
Query 184 AGATGCTCCGGGAAAAGGTGCCGGTCTTGGGCGGCGGCGGCGATCGCTGACTGCGTGGCG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGATGCTCCGGGAAAAGGTGCCGGTCTTGGGCGGCGGCGGCGATCGCTGACTGCGTGGCG 238
Query 244 CTCTGCTGTTGTCCCTGCGCCGTGGTGAACATCTTCACTCTCGCCTTTGTTAAGGTCCCG 303
||||| ||||||||||||||||| |||||| |||| |||||||||||||| |||||||||
Sbjct 239 CTCTGTTGTTGTCCCTGCGCCGTCGTGAACCTCTTTACTCTCGCCTTTGTGAAGGTCCCG 298
Query 304 TGGATGATAGGCCGGAAATGTATCGGCCGTGGTGGCCCGAGTAAGAAGCGGATGAAGAAA 363
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 299 TGGATGATAGGCCGGAAATGTATCGGCCGTGGTGGCCGGAGTAAGAAGCGAAGGAAGAAA 358
Query 364 ATCAACCGTGAGGATCGGTTTCATCACCATCACCACCACAGGAGGTCGGCCGAGATGGTG 423
||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||| |
Sbjct 359 ATCAACCGTGAGGATCGTTTTCATCACCACCACCAGCACCGGAGGTCGGCCGAGATGGCG 418
Query 424 AGTGGTGGATGTTGCGGTGGCGGAGATGGAGATGGAGAGTTCGATGACCATCGGTTTGTG 483
|| |||||||||||||| ||||| ||||| | | || ||||||||||| |||||||||
Sbjct 419 AGCGGTGGATGTTGCGGCGGCGGGGATGG-G--G-AG--TTCGATGACCACCGGTTTGTG 472
Query 484 GTGGAAAGAGACGGGAGTTTGACCAAAGAGGAAGCCAAAACGGCGTCGTTAAAAGAAGAG 543
||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||
Sbjct 473 GTGGAAAGAGATGGGAGTTTGACAAAAGAGGAAGAGAAAACGGCGTCGTTAAAAGGAGAT 532
Query 544 GAAGAGACGAGAATAAGTGCGAGAGTGGAAGCAGAGAGAGTTTGGTTAGAGTTGTATCAG 603
|||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 533 GAAGAGACGAGAATAAGTGCGAGAGTTGAAGCGGAAAGAGTTTGGTTGGAGTTGTATCAG 592
Query 604 ATTGGGCATCTTGGCTTTGGTAGAGTCTCCTTCACTGGCATTCATCAATGATAATAGAT- 662
||||| ||||||||||||||||||||||||||||| || |||||||| |||||||| ||
Sbjct 593 ATTGGACATCTTGGCTTTGGTAGAGTCTCCTTCACAGGAATTCATCAGTGATAATA-ATA 651
Query 663 GA-ACTTTTAATTATTAGGCGTATA 686
|| |||| ||||||||||||| |||
Sbjct 652 GATACTTATAATTATTAGGCGCATA 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5