BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01516.1 Length=751 Score E Sequences producing significant alignments: (Bits) Value Ahg477367 jgi|Araly1|477367|fgenesh2_kg.3__68__AT3G01516.1 933 0.0 > Ahg477367 jgi|Araly1|477367|fgenesh2_kg.3__68__AT3G01516.1 Length=676 Score = 933 bits (505), Expect = 0.0 Identities = 628/685 (92%), Gaps = 17/685 (2%) Strand=Plus/Plus Query 10 ATAGGAGTGTGATGTAT-T-TATAT---AAGTTAGTAAGCTTTGTTCTCTTTCTCTAttt 64 ||||||||||||||||| | ||||| |||||||||||||||||| ||||||||| ||| Sbjct 1 ATAGGAGTGTGATGTATATATATATAAGAAGTTAGTAAGCTTTGTTTTCTTTCTCT-TTT 59 Query 65 ttttGGCAGGTATATAAAATTT-TAAAATGGAGGAGGAAAACCAAAAGTCGCATCGAGTT 123 |||||||||| ||| |||||| ||||||||| |||||||||||||| ||||||||||| Sbjct 60 CTTTGGCAGGTTTAT-AAATTTAAAAAATGGAGAAGGAAAACCAAAAGCCGCATCGAGTT 118 Query 124 TCACGTAAAGACCAGAGTGGATCCCACTGGAGTCAAGGAGCCGATGAAGAGCCGAGAGCC 183 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 119 TCACGTAAAGACCAGAGTGGATCCCACTGGAGTCAAGGAGCCGATGAAGAGCCAAGAGCC 178 Query 184 AGATGCTCCGGGAAAAGGTGCCGGTCTTGGGCGGCGGCGGCGATCGCTGACTGCGTGGCG 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AGATGCTCCGGGAAAAGGTGCCGGTCTTGGGCGGCGGCGGCGATCGCTGACTGCGTGGCG 238 Query 244 CTCTGCTGTTGTCCCTGCGCCGTGGTGAACATCTTCACTCTCGCCTTTGTTAAGGTCCCG 303 ||||| ||||||||||||||||| |||||| |||| |||||||||||||| ||||||||| Sbjct 239 CTCTGTTGTTGTCCCTGCGCCGTCGTGAACCTCTTTACTCTCGCCTTTGTGAAGGTCCCG 298 Query 304 TGGATGATAGGCCGGAAATGTATCGGCCGTGGTGGCCCGAGTAAGAAGCGGATGAAGAAA 363 ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| Sbjct 299 TGGATGATAGGCCGGAAATGTATCGGCCGTGGTGGCCGGAGTAAGAAGCGAAGGAAGAAA 358 Query 364 ATCAACCGTGAGGATCGGTTTCATCACCATCACCACCACAGGAGGTCGGCCGAGATGGTG 423 ||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||||| | Sbjct 359 ATCAACCGTGAGGATCGTTTTCATCACCACCACCAGCACCGGAGGTCGGCCGAGATGGCG 418 Query 424 AGTGGTGGATGTTGCGGTGGCGGAGATGGAGATGGAGAGTTCGATGACCATCGGTTTGTG 483 || |||||||||||||| ||||| ||||| | | || ||||||||||| ||||||||| Sbjct 419 AGCGGTGGATGTTGCGGCGGCGGGGATGG-G--G-AG--TTCGATGACCACCGGTTTGTG 472 Query 484 GTGGAAAGAGACGGGAGTTTGACCAAAGAGGAAGCCAAAACGGCGTCGTTAAAAGAAGAG 543 ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||| Sbjct 473 GTGGAAAGAGATGGGAGTTTGACAAAAGAGGAAGAGAAAACGGCGTCGTTAAAAGGAGAT 532 Query 544 GAAGAGACGAGAATAAGTGCGAGAGTGGAAGCAGAGAGAGTTTGGTTAGAGTTGTATCAG 603 |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||| Sbjct 533 GAAGAGACGAGAATAAGTGCGAGAGTTGAAGCGGAAAGAGTTTGGTTGGAGTTGTATCAG 592 Query 604 ATTGGGCATCTTGGCTTTGGTAGAGTCTCCTTCACTGGCATTCATCAATGATAATAGAT- 662 ||||| ||||||||||||||||||||||||||||| || |||||||| |||||||| || Sbjct 593 ATTGGACATCTTGGCTTTGGTAGAGTCTCCTTCACAGGAATTCATCAGTGATAATA-ATA 651 Query 663 GA-ACTTTTAATTATTAGGCGTATA 686 || |||| ||||||||||||| ||| Sbjct 652 GATACTTATAATTATTAGGCGCATA 676 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27677237742 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5