BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01520.1
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477366 jgi|Araly1|477366|fgenesh2_kg.3__67__AT3G01520.1 981 0.0
> Ahg477366 jgi|Araly1|477366|fgenesh2_kg.3__67__AT3G01520.1
Length=658
Score = 981 bits (531), Expect = 0.0
Identities = 598/630 (95%), Gaps = 6/630 (1%)
Strand=Plus/Plus
Query 64 AAAAATGGGGAGCGAGCCAACAAAAGTGATGGTGGCGGTGAACGCTTCGACGATCAAAGA 123
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATGGGGAGCGAGCCGACTAAAGTGATGGTGGCGGTGAACGCTTCGACGATCAAAGA 60
Query 124 CTATCCTAACCCTTCGATTAGCTGCAAAAGAGCATTCGAATGGACTCTGGAGAAGATCGT 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTATCCTCACCCTTCGATTAGCTGCAAAAGAGCATTCGAATGGACTCTGGAGAAGATCGT 120
Query 184 AAGGTCCAACACTTCCGATTTCAAGATTCTCTTGCTCCACGTACAAGTCGTCGACGAAGA 243
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 CAGGTCCAACACTTCCGATTTCAAGATTCTCTTGCTTCACGTACAAGTCGTCGACGAAGA 180
Query 244 CGGTTTTGATGACGTGGATAGCATTTATGCTTCCCCTGAGGATTTCCGAGACATGAGACA 303
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
Sbjct 181 CGGTTTTGATGACGTAGACAGCATTTATGCTTCCCCTGATGATTTCCGAGACATGAGAGA 240
Query 304 ATCTAACAAGGCAAAAGGTCTTCACCTTCTCGAGTTTTTCGTTAATAAATGTCATGAGAT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTAACAAGGCAAAAGGTCTTCACCTTCTCGAGTTTTTCGTTAATAAATGTCATGAGAT 300
Query 364 TGGGGTTGGTTGCGAGGCCTGGATTAAGACAGGTGATCCCAAGGATGTCATATGCCAAGA 423
|||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 TGGGGTGGGTTGTGAGGCCTGGATTAAGATAGGTGATCCCAAGGATGTCATATGCCAAGA 360
Query 424 AGTGAAGCGAGTTCGACCAGATTTTCTGGTCGTGGGAAGTCGTGGACTTGGCCGGTTTCA 483
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTGAAACGAGTCCGACCAGATTTTCTGGTCGTGGGAAGTCGTGGACTTGGCCGGTTTCA 420
Query 484 AAAGGTCTTTGTGGGGACTGTGAGTGCGTTCTGTGTGAAACATGCGGAGTGTCCAGTTAT 543
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 421 AAAGGTCTTTGTGGGGACTGTGAGCGCGTTCTGTGTGAAACATGCCGAGTGTCCAGTTAT 480
Query 544 GACGATCAAACGCAATGCCGATGAAACTCCCAGTGATCCAGCTGATGACTAAACAATAAC 603
||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 481 GACCATCAAACGCAATGCCGATGAAACTCCCAGTGATGCAGCTGATGACTAAGCAACAAC 540
Query 604 A---ACGTCCCTTCCTTCTTTGATCTATACAGAGAGAGAGTGCTTTTGTGTGTACAAAAT 660
| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 541 AGCTACGTCCCTTCCTTGTTTGATTTATACAGAGAGAGATTGCTTTTGTGTGTACAAAAT 600
Query 661 CCAAATTC-CTACCCCtatatgtatt-tgt 688
|| ||||| | |||||| ||| |||| |||
Sbjct 601 CCTAATTCAC-ACCCCTGTATATATTATGT 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29964612762
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5