BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01530.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902931 jgi|Araly1|902931|Al_scaffold_0003_59 881 0.0
> Ahg902931 jgi|Araly1|902931|Al_scaffold_0003_59
Length=609
Score = 881 bits (477), Expect = 0.0
Identities = 581/627 (93%), Gaps = 24/627 (4%)
Strand=Plus/Plus
Query 654 ATGGAGACGACGATGAAGAAGAAAGGGAGAGTGAAAGCGACAATAACGTCACAGAAAGAA 713
||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||
Sbjct 1 ATGGAGACGACGATGAAGAAGAAAGGGCGAGGGAAGGCGACAATAACAACACAGAAAGAA 60
Query 714 GAAGAAGGAACAGTGAGAAAAGGACCTTGGACTATGGAAGAAGATTTCATCCTCTTTAAT 773
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 GAAGAAGGAACAGTGAGGAAAGGGCCTTGGACTATGGAAGAAGACTTCATCCTCTTTAAT 120
Query 774 TACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTCTAAAA 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTTTAAAA 180
Query 834 CGTACTGGAAAAAGTTGTCGGCTCCGGTGGCTGAACTATCTCCGACCAGATGTGCGGCGA 893
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 181 CGTACCGGAAAAAGTTGTCGGCTCCGGTGGCTGAACTATCTCCGACCAGATGTGAGGCGA 240
Query 894 GGGAACATAACCGAAGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC 953
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGAACATAACCGCTGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC 300
Query 954 AGGTGGTCGAAGATTGCGAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTC 1013
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTGGTCGAAGATTGCAAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTC 360
Query 1014 TGGAGGACAAAGATTCAGAGACACATGAAAGTGTCATCGGAAAATATGATGAATCATCAA 1073
|||||||||||||||||||||||||||||||| ||| | | | | ||| ||| |
Sbjct 361 TGGAGGACAAAGATTCAGAGACACATGAAAGT--CAT-GTCA--TC-G--GAA-CAT-AT 410
Query 1074 CATCATTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACG-C--A--A-GGCAGCTCC 1127
|| ||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct 411 GAT--TTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACGACGGACCAAGGCAGCTCA 468
Query 1128 GGCAAAGCCATAGACACGGCTGAGAGCTTCTCTCAGGCGAAGACGACGACGTTTAATGTG 1187
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 469 GGCAAAGCCATAGACATGGCTGAGAGCTTCTCTCAGGCGAAGACGACG---TTTAATGTG 525
Query 1188 GTGGAACAACAGTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCCGTCCACTTG 1247
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 526 GTGGAACA---GTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCTGTCCACTTG 582
Query 1248 CTTAATGGTGACCACCATGTGATTTAA 1274
|||||||||||||||||||||||||||
Sbjct 583 CTTAATGGTGACCACCATGTGATTTAA 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5