BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01530.1 Length=1507 Score E Sequences producing significant alignments: (Bits) Value Ahg902931 jgi|Araly1|902931|Al_scaffold_0003_59 881 0.0 > Ahg902931 jgi|Araly1|902931|Al_scaffold_0003_59 Length=609 Score = 881 bits (477), Expect = 0.0 Identities = 581/627 (93%), Gaps = 24/627 (4%) Strand=Plus/Plus Query 654 ATGGAGACGACGATGAAGAAGAAAGGGAGAGTGAAAGCGACAATAACGTCACAGAAAGAA 713 ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||||||||| Sbjct 1 ATGGAGACGACGATGAAGAAGAAAGGGCGAGGGAAGGCGACAATAACAACACAGAAAGAA 60 Query 714 GAAGAAGGAACAGTGAGAAAAGGACCTTGGACTATGGAAGAAGATTTCATCCTCTTTAAT 773 ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| Sbjct 61 GAAGAAGGAACAGTGAGGAAAGGGCCTTGGACTATGGAAGAAGACTTCATCCTCTTTAAT 120 Query 774 TACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTCTAAAA 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 121 TACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTTTAAAA 180 Query 834 CGTACTGGAAAAAGTTGTCGGCTCCGGTGGCTGAACTATCTCCGACCAGATGTGCGGCGA 893 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 181 CGTACCGGAAAAAGTTGTCGGCTCCGGTGGCTGAACTATCTCCGACCAGATGTGAGGCGA 240 Query 894 GGGAACATAACCGAAGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC 953 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGGAACATAACCGCTGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC 300 Query 954 AGGTGGTCGAAGATTGCGAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTC 1013 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGGTGGTCGAAGATTGCAAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTC 360 Query 1014 TGGAGGACAAAGATTCAGAGACACATGAAAGTGTCATCGGAAAATATGATGAATCATCAA 1073 |||||||||||||||||||||||||||||||| ||| | | | | ||| ||| | Sbjct 361 TGGAGGACAAAGATTCAGAGACACATGAAAGT--CAT-GTCA--TC-G--GAA-CAT-AT 410 Query 1074 CATCATTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACG-C--A--A-GGCAGCTCC 1127 || ||||||||||||||||||||||||||||||||||||| | | | |||||||| Sbjct 411 GAT--TTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACGACGGACCAAGGCAGCTCA 468 Query 1128 GGCAAAGCCATAGACACGGCTGAGAGCTTCTCTCAGGCGAAGACGACGACGTTTAATGTG 1187 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 469 GGCAAAGCCATAGACATGGCTGAGAGCTTCTCTCAGGCGAAGACGACG---TTTAATGTG 525 Query 1188 GTGGAACAACAGTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCCGTCCACTTG 1247 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 526 GTGGAACA---GTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCTGTCCACTTG 582 Query 1248 CTTAATGGTGACCACCATGTGATTTAA 1274 ||||||||||||||||||||||||||| Sbjct 583 CTTAATGGTGACCACCATGTGATTTAA 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56411652845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5