BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01540.2
Length=2395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477362 jgi|Araly1|477362|fgenesh2_kg.3__63__AT3G01540.2 2998 0.0
Ahg940941 jgi|Araly1|940941|scaffold_601485.1 1206 0.0
> Ahg477362 jgi|Araly1|477362|fgenesh2_kg.3__63__AT3G01540.2
Length=2271
Score = 2998 bits (1623), Expect = 0.0
Identities = 1903/2031 (94%), Gaps = 48/2031 (2%)
Strand=Plus/Plus
Query 107 AAAGCTCGAGTTCACA-GATTTGACCCGAGTCTTTAATCCAATCTGCTGGTTCGTTTTCC 165
|||||||||||||| | ||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 70 AAAGCTCGAGTTCAGAGGATTTGACCCGAGACTTTAATCTAATCTGCT-TTTCGTTTTCC 128
Query 166 ACATTCAAACT-CGAC-TCTTGAATATCAAAT-CAGAAGTC----TTTGCTATGGCTGCT 218
|||||| | | || | || | | |||| | |||||||| |||||||||||||||
Sbjct 129 ACATTC-AGGTACG-CGTC-T-ATTATC---TGCAGAAGTCTTTATTTGCTATGGCTGCT 181
Query 219 A---CCGCTGCTGCTTCTGTTGTCCGTTACGCACCTGAGGATCATACTCTTCCCAAGCCC 275
| |||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 182 ACCGCCGCTGCTCCTTCTGTTGTCCGTTATGCACCTGAGGATCATTCTCTTCCCAAGCCC 241
Query 276 TGGAAAGGCCTTATCGATGATAGAACTGGTTACTTGTACTTTTGGAATCCTGAGACCAAT 335
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TGGAAAGGCCTTGTCGATGATAGAACTGGTTACTTGTACTTTTGGAATCCTGAGACCAAT 301
Query 336 GTTACTCAGTACGAGAAACCAACCCCCT-CTCTA-CCTCCTAAGTTTTCTCCCGCCGTTT 393
|||||||||||||||||||| | || || ||| | ||||| ||| || |||||||||||
Sbjct 302 GTTACTCAGTACGAGAAACCTA-CCGCTGCTC-AGCCTCCCAAG--TT-TCCCGCCGTTT 356
Query 394 CTGTTAGCTCTTCCGTTCAGGTTCAACAAACTGATGCCTATGCTCCTCCCAAGGATGACG 453
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 CTCTTAGCTCTTCCGTTCAGGTTCAACAAACTGATGCCTATGCTCCTGCCAAGGATGACA 416
Query 454 ATAAGTACTCCAGAGGCTCTGAAC----G--T--G--T--G--T--C-C-AGGTTTTCTG 495
|||||||| |||||||| |||||| | | | | | | | | ||||| | |
Sbjct 417 ATAAGTACCCCAGAGGCACTGAACATGGGCCTAAGATTGAGTCTGCCTCGAGGTTCACCG 476
Query 496 AGGGTGGCAGGAGTGGACCGCCTTATTCGAACGGTGCTGCTAATGGAGTTGGGGATTCTG 555
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 477 AGGGTGGCAGAAGTGGACCGCCATATTCAAACGGTGCTGCTAATGGAGTTGGGAATTCTG 536
Query 556 CTTATGGTGCAGCATCTACCAGAGTTCCTCTTC-CTTCATCAGCTCCAGCAAGTGAACTA 614
|||||||| |||||||| |||||| ||||| || | ||||||||||||| || ||||||
Sbjct 537 CTTATGGTCCAGCATCTGCCAGAGGTCCTCCTCGC-TCATCAGCTCCAGGAAATGAACTG 595
Query 615 TCCCCTGAGGCCTATTCCCGCCGTCATGAAATTACTGTCAGTGGGGGCCAAGTACCACCA 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TCCCCTGAGGCCTATTCCCGCCGTCATGAAATTACTGTCAGTGGGGGCCAAGTACCACCA 655
Query 675 CCTCTAATGTCCTTTGAAGCTACTGGTTTTCCACCTGAGCTTCTGCGGGAGGTACTCAGT 734
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 656 CCTCTAATGTCCTTTGAAGCTACTGGTTTTCCTTCTGAGCTTCTGCGGGAGGTACTCAAT 715
Query 735 GCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTCATGGCCCATTGCTATGCAAGGT 794
||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 716 GCAGGTTTCTCTGCTCCTACTCCGATTCAAGCTCAGTCATGGCCAATTGCGATGCAAGGG 775
Query 795 AGGGACATAGTAGCCATTGCTAAAACTGGCTCGGGAAAAACTTTGGGTTACTTGATTCCT 854
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGGGACATAGTTGCCATTGCTAAAACTGGCTCGGGAAAAACTTTGGGTTACTTGATTCCT 835
Query 855 GGATTTTTGCATCTTCAACGTATCCGAAATGATTCGCGAATGGGCCCAACAATCTTGGTA 914
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGATTTCTGCATCTTCAACGCATCCGAAATGATTCGCGAATGGGCCCAACAATCTTGGTA 895
Query 915 TTGTCTCCAACGAGAGAGCTGGCCACACAAATCCAAGAAGAAGCTGTTAAATTTGGGAGG 974
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTGTCTCCAACGAGGGAGCTGGCCACACAAATCCAAGAAGAAGCTGTTAAATTTGGGAGG 955
Query 975 TCATCAAGAATTTCGTGTACGTGTTTGTATGGTGGTGCACCAAAGGGCCCTCAGTTGAGG 1034
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 956 TCATCAAGAATTTCGTGCACGTGTTTGTATGGTGGTGCACCAAAGGGCCCTCAGCTGAGG 1015
Query 1035 GATTTAGAAAGAGGAGCAGATATCGTGGTTGCAACTCCTGGGAGATTGAATGATATCCTT 1094
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1016 GATTTAGAAAGAGGAGCAGATATCGTGGTTGCAACTCCTGGGCGATTGAATGATATCCTT 1075
Query 1095 GAAATGAGGAGGATTAGTCTGCGTCAGATATCTTATCTTGTGCTAGATGAGGCAGATAGA 1154
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1076 GAAATGAGGAGGATAAGTCTGCGTCAAATATCTTATCTTGTGCTAGATGAGGCAGATCGA 1135
Query 1155 ATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAGATTGTGAAAGAAATTCCCACTAAG 1214
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1136 ATGTTGGACATGGGTTTTGAACCACAGATAAGGAAGATTGTGAAAGAAATTCCCACGAAG 1195
Query 1215 CGTCAAACCCTTATGTACACAGCTACATGGCCAAAGGGAGTTAGGAAAATTGCAGCTGAC 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CGTCAAACCCTTATGTACACAGCTACATGGCCAAAGGGAGTTAGGAAAATTGCAGCTGAC 1255
Query 1275 TTGCTTGTTAACCCTGCTCAAGTCAACATTGGCAATGTTGACGAGCTTGTGGCTAACAAG 1334
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1256 TTACTTGTTAACCCTGCTCAAGTCAACATTGGGAATGTTGACGAGCTTGTGGCTAACAAG 1315
Query 1335 TCAATCACACAGCATATTGAAGTGGTAGCACCAATGGAGAAACAGAGGAGGTTAGAGCAG 1394
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TCAATAACACAGCATATTGAAGTGGTAGCACCAATGGAGAAACAGAGGAGGTTAGAGCAG 1375
Query 1395 ATCTTGCGGTCTCAGGAACCAGGCTCAAAGGTGATAATATTCTGCTCAACCAAAAGGATG 1454
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1376 ATCTTGCGGTCTCAGGAACCAGGCTCGAAGGTGATAATATTCTGCTCAACCAAAAGGATG 1435
Query 1455 TGTGATCAACTAACACGCAATCTAACCCGCCAATTTGGAGCTGCTGCTATACATGGAGAC 1514
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1436 TGTGATCAACTAACCCGCAATCTAACCCGCCAATTTGGAGCTGCTGCTATACATGGGGAC 1495
Query 1515 AAGTCCCAGCCTGAGAGAGACAATGTTCTTAATCAATTCCGCAGTGGCAGAACTCCGGTT 1574
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1496 AAGTCACAGCCTGAGAGAGACAATGTTCTTAATCAATTCCGCAGTGGCAGGACTCCGGTT 1555
Query 1575 CTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACGTTAAGGACATCAGGGCGGTCGTA 1634
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1556 CTTGTAGCAACTGATGTTGCTGCTCGTGGGCTGGATGTTAAGGACATCAGGGCTGTCGTA 1615
Query 1635 AACTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAGAATCGGAAGAACAGGAAGA 1694
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1616 AATTATGATTTCCCCAATGGAGTGGAAGACTATGTTCATAGAATAGGAAGAACAGGAAGA 1675
Query 1695 GCTGGAGCGACTGGTCAGGCATTCACATTCTTTGGTGATCAAGATTCGAAACATGCTTCG 1754
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1676 GCTGGAGCGACTGGTCAGGCATTCACATTCTTTGGTGATCAAGATTCGAAGCATGCTTCG 1735
Query 1755 GATCTGATCAAGATTTTGGAAGGAGCAAACCAGCGAGTTCCTCCTCAGATCCGCGAAATG 1814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GATCTGATCAAGATTTTGGAAGGAGCAAACCAGCGAGTTCCTCCTCAGATCCGCGAAATG 1795
Query 1815 GCTACACGTGGTGGTGGGGGAATGAACAAATTCAGTCGTTGGGGACCTCCTTCCGGCGGC 1874
||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1796 GCTACCCGTGGTGGTGGTGGAATGAACAAATTCAGTCGTTGGGGTCCTCCTTCCGGAGGC 1855
Query 1875 CGTGGTCGTGGTGGCGACTCTGGTTATGGTGGCAGAGGTAGCTTTGCTTCCCGTGACAGT 1934
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1856 CGTGGTCGTGGTGGCGACTCTGGTTATGGTGGCAGAGGTAGCTTTGTTTCGCGTGACAGT 1915
Query 1935 AGAAGCAGCAATGGATGGGGAAGAGAGCGAGAAAGGAGCCGTAGCCCTGAGAGATTCAAC 1994
|||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||| |||
Sbjct 1916 AGAAGCAGTAATGGATGGGGAAGAGAGCGTGAAAGAAGCCGTAGCCCCGAGAGATTTAAC 1975
Query 1995 AGAGCTCCACCACCGTCTTCCACCGGATCTCCTCCTCGCAGCTTCCACGAGACGATGATG 2054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 AGAGCTCCACCACCGTCTTCCACCGGATCTCCTCCTCGCAGCTTCCACGAGACGATGATG 2035
Query 2055 ATGAAACACAGATGAAAAGAGAGATACAAAGCTCTGATAAAGCCAAGTGAC 2105
|||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2036 ATGAAACACAGATGAAAAGAGAGACACAAAGCT--GATAAAGCCAAGTGAC 2084
> Ahg940941 jgi|Araly1|940941|scaffold_601485.1
Length=2183
Score = 1206 bits (653), Expect = 0.0
Identities = 1009/1181 (85%), Gaps = 24/1181 (2%)
Strand=Plus/Plus
Query 720 CGGGAGGTACTCAGTGCAGGTTTCTCTGCTCCAACTCCAATTCAAGCTCAGTCATGGCCC 779
||||||| | | | |||||| ||||| |||||| ||||||||||||||||||| |||||
Sbjct 747 CGGGAGG-A-TGATTGCAGGATTCTCAGCTCCATCTCCAATTCAAGCTCAGTCTTGGCCA 804
Query 780 ATTGCTATGCAAGGTAGGGACATAGTAGCCATTGCTAAAACTGGCTCGGGAAAAACTTTG 839
||||| |||||| || ||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 805 ATTGCGATGCAAAACAGAGACATAGTAGCCATTGCTAAAACAGGCTCTGGAAAAACTCTG 864
Query 840 GGTTACTTGATTCCTGGATTT-TTGCATCTTCAACGTATCCGA-AATGATTCGCGAATGG 897
||||||||||||||||| ||| ||||||| ||||| |||| | |||||||| |||||||
Sbjct 865 GGTTACTTGATTCCTGG-TTTCATGCATCTCCAACGAATCC-ACAATGATTCACGAATGG 922
Query 898 GCCCAACAATCTTGGTATTGTCTCCAACGAGAGAGCTGGCCACACAAATCCAAGAAGAAG 957
|||||||||||||||||||||| || || || ||| |||||||||||||||||| ||||
Sbjct 923 GCCCAACAATCTTGGTATTGTCACCTACTAGGGAGTTGGCCACACAAATCCAAGTTGAAG 982
Query 958 CTGTTAAATTTGGGAGGTCATC-AAGAATTTCGTGTACGTGTTTGTATGGTGGTGCACCA 1016
|| | |||||||| | |||||| || |||||||||| |||| ||||||||||| |||||
Sbjct 983 CTCTGAAATTTGGAAAGTCATCCAA-AATTTCGTGTGCGTGCTTGTATGGTGGAGCACCC 1041
Query 1017 AAGGGCCCTCAGTTGAGGGATTTAGAAAGAGGAGCAGATATCGTGGTTGCAACTCCTGGG 1076
||||| |||||| ||| ||| |||||||||| | |||||| || ||||||||||| |||
Sbjct 1042 AAGGGTCCTCAGCTGAAGGAAATAGAAAGAGGTGTAGATATTGTTGTTGCAACTCCCGGG 1101
Query 1077 AGATTGAATGATATCCTTGAAATGAGGAGGATTAGTCTGCGTCA-GATATCTTATCTTGT 1135
|| ||||||||||||||||||||||||| || ||||||| ||| | |||||||||||||
Sbjct 1102 CGACTGAATGATATCCTTGAAATGAGGAGAATCAGTCTGCATCAAG-TATCTTATCTTGT 1160
Query 1136 GCTAGATGAGGCAGATAGAATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAGATTGT 1195
||| || ||||| ||||||||| |||||||||| |||||||||||||| || || |||||
Sbjct 1161 GCTGGACGAGGCTGATAGAATGCTGGACATGGGGTTTGAACCTCAGATCAGAAAAATTGT 1220
Query 1196 GAAAGAAATTCCCACTAAGCGTCAAACCCTTATGTACACAGCTACATGGCCAAAGGGAGT 1255
||| || ||||||||||||| ||||| |||||||||||||| ||||||||||||| ||
Sbjct 1221 GAACGAGGTTCCCACTAAGCGCCAAACTCTTATGTACACAGCAACATGGCCAAAGG-AGG 1279
Query 1256 T-AGGAAAATTGCAGCTGA-CTTGCTTGTTAACCCTGCTCAAGTCAACATTGGCAATGTT 1313
| |||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 1280 TCAGGAAAATCGCAGCTGATCTA-CTTGTTAACCCTGCCCAAGTCAACATTGGTAATGTT 1338
Query 1314 GACGAGCTTGTGGCTAACAAGTCAATCACACAG-CATATTGAAGTGGTAGCACCAATGGA 1372
|| ||||||||||| || ||||| || || ||| | ||||||||| ||||||| |||||
Sbjct 1339 GATGAGCTTGTGGCAAATAAGTCCATTACTCAGAC-TATTGAAGTCTTAGCACCGATGGA 1397
Query 1373 GAAACAGAGGAGGTTAGAGCAGATCTTGCGGTCTCAGGAACCAGGCTCAAAGGTGATAAT 1432
|||||| || |||||||||||||| ||||||||||||||||| || || ||| | |||||
Sbjct 1398 GAAACATAGCAGGTTAGAGCAGATATTGCGGTCTCAGGAACCGGGTTCCAAGATCATAAT 1457
Query 1433 ATTCTGCTCAACCAAAAGGATGTGTGATCAACTAACACGCAATCTAACCCGC-CAATTTG 1491
||||| |||||||||||||||||||||||||| || | || || ||||| | ||||
Sbjct 1458 TTTCTGTTCAACCAAAAGGATGTGTGATCAACTGGCAAGGAACCTGACCCGTACG-TTTG 1516
Query 1492 GAGCTGCTGCTATACATGGAGACAAGTCCCAGCCTGAGAGAGACAATGTTCTTAATCAAT 1551
|||| ||||||||||||||||||||||| ||| ||||||||||| | || || || ||||
Sbjct 1517 GAGCCGCTGCTATACATGGAGACAAGTCTCAGGCTGAGAGAGACGACGTACTGAACCAAT 1576
Query 1552 TCCGCAGTGGCAGAACTCCGGTTCTTGTAGCAACCGATGTTGCTGCTCGTGGTCTGGACG 1611
| | ||||| || ||||| |||||||| ||||||||||| ||||||||||| || ||||
Sbjct 1577 TTAGAAGTGGTAGGACTCCTGTTCTTGTTGCAACCGATGTAGCTGCTCGTGGACTTGACG 1636
Query 1612 TTAAGGACATCAGGGCGGTCGTAAACTATGATTTCCCCAATGGAGTGGAAGACTATGTTC 1671
|||||||||| |||| ||| || ||||||||||| || |||||||| || || ||||| |
Sbjct 1637 TTAAGGACATAAGGGTGGTGGTCAACTATGATTTTCCAAATGGAGTAGAGGATTATGTCC 1696
Query 1672 ATAGAATCGGAAGAACAGGAAGAGCTGGAGCGACTGGTC-AGGCATT-CACATTCTTTGG 1729
|||||||||||||||| |||||||||||||| || |||| || | || ||| || |||||
Sbjct 1697 ATAGAATCGGAAGAACTGGAAGAGCTGGAGCTACCGGTCTAG-C-TTACACCTTTTTTGG 1754
Query 1730 TGATCAAGATTCGAAACATGCTTCGGATCTGATCAAGATTTTGGAAGGAGCAAACCAGCG 1789
|| |||||| | ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1755 AGACCAAGATGCAAAACATGCTTCAGATCTGATCAAGATCTTGGAAGGAGCAAACCAGAA 1814
Query 1790 AGTTCCTCCTCAGATCCGCGAAATGGCTACACGTGGTGGTGGGGGAATGAACAAATT-CA 1848
||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1815 AGTTCCTCCACAGGTCCGCGAAATGGCTACACGTGGTGGTGGTGGAATGAACAAATTTC- 1873
Query 1849 GTCGTTGGGGACCTCCTTCCGGCGGCCGTGGTCGTGGTGGC 1889
| || |||||||| |||||| | || ||||| |||| |||
Sbjct 1874 GCCGCTGGGGACCACCTTCCAGTGGTGGTGGTGGTGGAGGC 1914
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90235790405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5