BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01550.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477360 jgi|Araly1|477360|fgenesh2_kg.3__61__AT3G01550.1 1964 0.0
> Ahg477360 jgi|Araly1|477360|fgenesh2_kg.3__61__AT3G01550.1
Length=1392
Score = 1964 bits (1063), Expect = 0.0
Identities = 1277/1376 (93%), Gaps = 32/1376 (2%)
Strand=Plus/Plus
Query 21 AAAAACAAAACAAACTTTTTTCTTCTTACATGAAAAT---GAG---GAG--G-TAGACTC 71
||||||||||||||||||||||||||||||||||||| ||| ||| | | | ||
Sbjct 1 AAAAACAAAACAAACTTTTTTCTTCTTACATGAAAATGGGGAGACAGAGAAGTTCCATTC 60
Query 72 ATGTAACATAACTCTTACCAATAGAGG-AAG-AAGA-AAAAGTTAGCAAGAGTCGGTTAC 128
||||||||||||||||||||||||||| ||| || | ||||||||||||| |||||||||
Sbjct 61 ATGTAACATAACTCTTACCAATAGAGGAAAGAAAAATAAAAGTTAGCAAGTGTCGGTTAC 120
Query 129 TTGTGAGAAATTCCAACAAATGCCGGAGGATTTATGCACATCTTGGAGCATCTGAT-A-A 186
|||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |
Sbjct 121 TTGT--GAAATTCCAACAAATGCCAGAGGATTTATGCACATCCTGGAGCATCTGATCACC 178
Query 187 GAGGAAAAAATTATGTTCGCTCTCACATTTCTAAATCCAAATCCAAGACTTCCATCTCCA 246
|| | |||||||||||| ||||| |||||| ||| |||||||||||||||||||||| ||
Sbjct 179 GAAG-AAAAATTATGTTTGCTCTTACATTTATAACTCCAAATCCAAGACTTCCATCTTCA 237
Query 247 TTGTTCCTTGCCAAGTCTACTCCTGAATCAGCGTTGAGCAGAAGAAGCAGAGCTTTTTCA 306
|||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 238 TTGTTCGTTGCCAAGTCTATTCCCGAATCAGCGTTGAGCAGAAGAAGCATAGCTTTTTCA 297
Query 307 TCTTCTAACTCTTATCCTTGGAGACCGAACCTTAGATTTAATGGCTTCAAGCTCAAGTCA 366
|| | | | || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TC-T-T-A-TC--A---TTGGAGACCGAACCTTAGATTTAATGGCTTCAAGCTCAAGTCA 348
Query 367 GCTACAGTTCCGGAGAATGTGGAAGGAGGAGATTTGGAATCTGGAAGTTTGGTTAAAGGG 426
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||
Sbjct 349 GCTACAGTTCCGGAGAATGTTGAAGGAGGAGATTCAGAATCTGGAAGTTTGGTCAAAGGG 408
Query 427 TTGAAGCTAGGAGGCATGTTTGGAGTTTGGTACCTTCTCAATATCTACTACAACATTTTC 486
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 409 TTAAAGTTAGGAGGCATGTTTGGAGTTTGGTACCTTCTCAATATCTACTACAACATCTTC 468
Query 487 AACAAACAGGTACTTAGGGTTTATCCATATCCAGCGACTGTAACAGCATTTCAATTAGGG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AACAAACAGGTACTTAGGGTTTATCCATATCCAGCGACTGTAACAGCATTTCAATTAGGG 528
Query 547 TGTGGAACGTTGATGATTGCTATAATGTGGCTCCTTAAACTCCATCCACGCCCCAAATTT 606
|||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 529 TGTGGAACGTCGATGATTGCAATAATGTGGCTCTTTAAACTCCATCCACGCCCCAAATTT 588
Query 607 TCTCCTTCTCAGTTTACGGTGATCGTACAACTAGCAGTAGCTCACACGTTAGGGAACTTG 666
|||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 589 GCTCCTTCTCAGTTTACGGCGATCGTACAACTAGCAGCAGCTCACACGTTAGGTAACTTG 648
Query 667 TTAACAAATGTGAGCTTAGGAAGAGTAAATGTCTCTTTCACCCACACTATCAAAGCAATG 726
|| ||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 649 TTGACAAACGTGAGCTTGGGAAGAGTAAATGTCTCTTTCACCCACACAATCAAAGCAATG 708
Query 727 GAGCCTTTCTTCACCGTCTTGCTT-TCTGTTCTCTTGCTCGGTGAGTGGCCGAGTCTGTG 785
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 709 GAGCCTTTCTTCACCGTCTTG-TTATCTGTTCTCTTGCTCGGTGAGTGGCCGAGTCTGTG 767
Query 786 GATTGTTTGTTCGTTGTTACCTATTGTCGCTGGAGTCTCTTTAGCATCTTTCACAGAAGC 845
|||||||||||||||||| || || ||||||||||||||||||||||| |||||||||||
Sbjct 768 GATTGTTTGTTCGTTGTTGCCAATCGTCGCTGGAGTCTCTTTAGCATCATTCACAGAAGC 827
Query 846 TTCTTTCAATTGGATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACG 905
|||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 828 TTCTTTCAATTGGATTGGTTTCTGCAGTGCAATGGCATCTAATGTAACGAACCAATCACG 887
Query 906 CAATGTCCTCAGTAAAAAATTCATGGTTGGAAAGGACGCTTTGGACAACATCAACCTTTT 965
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 888 CAATGTTCTCAGTAAAAAATTCATGGTTGGAAAGGAAGCTATGGACAACATCAACCTTTT 947
Query 966 CTCTATAATAACCATTATCTCCTTTATCTTACTGGTTCCTTTAGCAATCCTCATCGATGG 1025
|||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 948 CTCTGTAATAACAATTATCTCCTTTATCTTACTGGTTCCTGTAGCAGTCCTCATCGATGG 1007
Query 1026 GTTCAAGGTTACTCCTTCGCATTTACAAGTAGCAACAAGCCAGGGTTTGTCGGTAAAAGA 1085
||| ||| ||||||||||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 1008 GTTTAAGCTTACTCCTTCGGACTTACAAATAGCAACAAGCCAGGGTTTGTCGGTAAAAGA 1067
Query 1086 GTTTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGGTATCGTA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GTTTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGGTATCGTA 1127
Query 1146 TATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGAACTGCGTGAAGCGTGT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 TATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGAACTGCGTGAAGCGTGT 1187
Query 1206 GGTGGTTATTACATCATCCATTCTTTTCTTCAAAACTCCAGTCTCACCTCTTAACTCTAT 1265
||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||
Sbjct 1188 TGTGGTTATTACATCATCCATTATTTTCTTCAAAACCCCAGTCTCACTTCTTAACTCTAT 1247
Query 1266 AGGTACCGCGACTGCACTAGCTGGAGTATATTTGTACAGCAGAGCCAAACGAGTCCAAGT 1325
||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 1248 AGGTACCGCAACTGCACTAGCTGGAGTTTATTTGTACAGCAGAGCCAAAAGAGTCAAAGT 1307
Query 1326 CAAACCAAATCCAAAAATGTCTTGAATT-TT--GTATATAGAAGCTCTTA-GTTTA 1377
||||| ||| ||||||| |||||||||| || ||| ||||||||||||| |||||
Sbjct 1308 CAAACAAAACCCAAAAACGTCTTGAATTATTATGTACATAGAAGCTCTTAAGTTTA 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5