BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01560.1
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477359 jgi|Araly1|477359|fgenesh2_kg.3__60__AT3G01560.1 1085 0.0
Ahg893360 jgi|Araly1|893360|Al_scaffold_0006_1356 215 1e-54
> Ahg477359 jgi|Araly1|477359|fgenesh2_kg.3__60__AT3G01560.1
Length=1816
Score = 1085 bits (587), Expect = 0.0
Identities = 686/733 (94%), Gaps = 10/733 (1%)
Strand=Plus/Plus
Query 1284 CAGCCACCACCATCATCAGGCTACAACCCCGAAGAACAACCACCATA-TCAGATGCAATC 1342
||| ||||||||||||||||||||||||||| ||||||| |||||| || ||||| ||
Sbjct 1088 CAGTCACCACCATCATCAGGCTACAACCCCGGGGAACAACAACCATACCCA-ATGCAGTC 1146
Query 1343 TTACCCGCCAAACCCTCCTCGTCAACAGCCACCTGCTGGTTCTACCCCTTCTCAACAGTT 1402
||||||||||| |||||||| ||| |||||||||||||||||| |||||||||| || ||
Sbjct 1147 TTACCCGCCAATCCCTCCTCATCAGCAGCCACCTGCTGGTTCTGCCCCTTCTCAGCACTT 1206
Query 1403 CTACAACCCTCCTCAACCACAACCATCAATGTACGATGGAGCGGGTGGTAGATCTAATTC 1462
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1207 CTACAACCCTCCTCAACCACAACCATCAATGTATGATGGAGCGGGTGGTAGATCTAATTC 1266
Query 1463 AGGTTTTCCGTCCGGCTACTTGTCTGAACCTTACACATACAGTGGTTCACCAATGTCCTC 1522
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||
Sbjct 1267 AGGTTTTCCGTCCGGCTACTCGTCTGAACCTTACCCATACAGTGGTTCACCAATGTCATC 1326
Query 1523 AGCGAAACCGCCACATATAAGTAGCAATGGAACTGGTTACCCACAGCTCTCAAATTCACG 1582
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1327 AGCGAAACCGCCACATATAAGTAGCAGTGGAACTGGTTACCCACAGCTCTCAAATTCACG 1386
Query 1583 TCCATTGCCACACGCTTTGCC---AATGGTTTCAGCCGTCAGCAGCGGTGGTGGCTCTAG 1639
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1387 TCCATTGCCACACGCTTTGCCAATAATGGTTTCAGCCATCAGCAGCGGTGGTGGCTCTAG 1446
Query 1640 TTCCCCTAGATCAGAAAGCAGAGCCCCAATCGATGATGTAATCGACAGGGTGACAACCAT 1699
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1447 CTCCCCGAGATCAGAAAGCAGAGCCCCAATCGATGATGTGATCGACAGGGTGACAACCAT 1506
Query 1700 GGGATTCCCAAGGGACCAAGTCAGAGCAACAGTGAGAAAACTGACTGAAAACGGCCAAGC 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GGGATTCCCAAGGGACCAAGTCAGAGCAACAGTGAGAAAACTGACTGAAAACGGCCAAGC 1566
Query 1760 TGTTGACCTCAACGTGGTTCTGGATAAGTTGATGAACGAAGGAGGAGCTCCACCTGGAGG 1819
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1567 TGTTGACCTCAACGTGGTTCTGGATAAGTTGATGAACGAAGGAGGAGCTCCACCAGGAGG 1626
Query 1820 tttttttGGTGGTCGGTAGCCATCGGTTTAGCCAACTCTGTACAGTACTTTATATCAGTT 1879
|| |||| ||||||||||||||||| ||||| ||| ||||||||||||| |||||||||
Sbjct 1627 TTGGTTTGATGGTCGGTAGCCATCGGCTTAGCTAACCCTGTACAGTACTTAATATCAGTT 1686
Query 1880 ATCGA-TTTAAGGATCACCTTTGTGACCAAATATCGATTTCA-AGAGCTTGTAAGTTGTA 1937
||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1687 ATCGAGTTTA-GGATCACCTTTGTGACCAAATATCGATTTCTTAGAGCTTGTAAGCCGTA 1745
Query 1938 ACCCATTGCGACTTCATATATGATATCAGTTTGATGCGTAATTCTAGAGAATGTCTATTA 1997
|||||||| ||||| |||||||| |||||||||||||||||| ||||| |||||| |||
Sbjct 1746 ACCCATTGTGACTT--TATATGATTTCAGTTTGATGCGTAATTGTAGAGTATGTCTGTTA 1803
Query 1998 CTCCTTTGTGTTT 2010
|||||||||||||
Sbjct 1804 CTCCTTTGTGTTT 1816
Score = 830 bits (449), Expect = 0.0
Identities = 812/969 (84%), Gaps = 98/969 (10%)
Strand=Plus/Plus
Query 272 TCGGGAGTCGGAGAA-ATTGTCGGGTGGATCGATGAATACTTGTCAGTTTATGGAT-A-- 327
||| ||||||||||| ||| || |||||||||||||||| |||||||| ||||||| |
Sbjct 155 TCGAGAGTCGGAGAAGATT-TC-GGTGGATCGATGAATAATTGTCAGTATATGGATAAGC 212
Query 328 AGCAGATAATGGATCTATCTTCTTCTTCATCTCTACCTTCCACTGATTTCATCGATCTGA 387
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 213 AGCAGATAATGGATCTATCCTCTTCGTCATCTCCACCTTCCACTGATTTCATCGATCTGA 272
Query 388 TGAACAATCATGACGGCGATGATCACCAGAAGAAGCAGGTGATCGGCGATAATGGATTGG 447
|||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 273 TGAACAATCAGGACG---ATGATCACCAGAAGAAGCAGGTGATCGGCGATGATGGATTGG 329
Query 448 ACTCTAAGAAAGAAGTGATCGTTCCTAGCTATGATTTCCATCCCATACGTCCCACCACCG 507
||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 330 ACTCTAAGAAAGAAGAGATCCTTCCTAGCTATGATTTCCATCCCATTCGTCCCACCACCG 389
Query 508 CCGC-AC--GATTGTCTCACTCGGCTTTAGATCTCGCCGGATCCACGACTA-------GG 557
|||| || |||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 390 CCGCCACTCGATTGTCTCATTCGGCTTTAGATCTCGCCGGATCTACGACTACTTCTACGG 449
Query 558 --GTTA------ATTGGTCCGCCTCTGATTATAAACCCGTTTCCACTACTTCGCCTAACA 609
| || |||||||||||||||||| |||||||||||||||| | || |
Sbjct 450 CCGCTAGGGTTCATTGGTCCGCCTCTGATTTTAAACCCGTTTCCACT--T-CGGGT---- 502
Query 610 CTAATTTTGGATCTCTCGATTCTATTGAACCTTCCAAGTTGGTTCCTGACAAGGGTCAAA 669
| || |||||| ||| |||||||| ||||||||| ||||||||||||| |
Sbjct 503 -T--TT--GGATCT----ATT-----GAACCTTCAAAGTTGGTTTCTGACAAGGGTCAGA 548
Query 670 ATGTGTTTAACACGACTATTATGTCCGAGATTATAGATAGGACAATGAAGAAACATACCG 729
|||||| || | || ||||||||||||| |||||||| ||||||||||||||||
Sbjct 549 ATGTGTCTA-------T-TT-TGTCCGAGATTATTGATAGGACCATGAAGAAACATACCG 599
Query 730 ATACCTTGCTTCATGTAATGGAAGGTGTTAGTGCACGTCTTTCACAGCTGGAGACCAGAA 789
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 600 ATACCTTGCTTCATGTGATGGAAGGTGTTAGTGCACGTCTATCACAGCTGGAGAGCAGGA 659
Query 790 CCCACAACCTCGAGAACCTGGTGGATGATCTCAAAGTTTCTGTTGACAATAGTCACGGCA 849
||||||| |||||||||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 660 CCCACAATCTCGAGAACCTGGTCGATGATCTCAAAGTTTCTGTTGACAACAGTCTCGGCA 719
Query 850 GCACTGATGGGAAAATGAGACAGCTTAAAAATATCCTTGTAGAGGTGCAGAGTGGTGTGC 909
|| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 720 GCTCTGATGGGAAAATCAGACAGCTTAAAAACATCCTTGTAGAGGTGCAGAGTGGTGTAC 779
Query 910 AACTATTGAAGGACAAACAAGAGATTCTCGAAGCT-CAGCTTTCAAAGCATC-AG-GTAT 966
||||||||||||| |||||||| ||| ||||||| | || | || | ||| | |||
Sbjct 780 AACTATTGAAGGATAAACAAGAAATTGTCGAAGCAAC-GCAT-CAG-GTATCCAAAGTAG 836
Query 967 CCAACCAGCATGCCAAAACACACTCTTTACACGTTGATCCCACTGCTCAATCGCCCGCTC 1026
| |||||| ||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 837 --A-CCAGCACACCAAAACACACTCTTTACACGTTCATCCCACTGCTCAATCGCCTGCAC 893
Query 1027 CAGTCCCTATGCA---------GC---AGTTTCCTCTTACTTCTTTCCCACAGCCACCAT 1074
|||||||| |||| || |||||||| |||||||||||||||| |||||||
Sbjct 894 CAGTCCCTCTGCATTTACAAATGCCTCAGTTTCCTATTACTTCTTTCCCACACCCACCAT 953
Query 1075 CTTCCACTGCTGCTCCTTCCCAGCCACCTTCCTCGCAACTACCACCTCAGCTACCTACGC 1134
||||| ||||||||||||||||||| ||||||||||||||||| | | | || |
Sbjct 954 CTTCCGCTGCTGCTCCTTCCCAGCCGCCTTCCTCGCAACTACC---T-A-C--CC-AT-- 1003
Query 1135 AGTTTTCTTCTCAACAAGAGCCGTATTGTCC-TCCGCCTAGTCATCCTCAACCA-CCTCC 1192
|||||| |||||||||||||||||| ||| ||| ||| | ||| ||||| |||||
Sbjct 1004 --TTTTCTCCTCAACAAGAGCCGTATT-TCCCTCCACCTC--C-TCCA-AACCAGCCTCC 1056
Query 1193 ATCAAACCC 1201
||||||||
Sbjct 1057 -TCAAACCC 1064
> Ahg893360 jgi|Araly1|893360|Al_scaffold_0006_1356
Length=1332
Score = 215 bits (116), Expect = 1e-54
Identities = 337/436 (77%), Gaps = 45/436 (10%)
Strand=Plus/Plus
Query 1092 TCCCAGCCACCTTCCTCGCAACTACCACCTCAGCTACCTACG-CAGTTTTCTTCTCAACA 1150
|||| ||||||||| || ||||| ||||||| |||| | ||||| ||| | || ||
Sbjct 809 TCCC-GCCACCTTCATCTCAACT---GTCTCAGCTTCCTA-GCCAGTTCTCTCCCCAGCA 863
Query 1151 AGAGCCGTATTGT-CCTCCGCCTAGTCA-TCCTCAACCACCTCCATCAAACCCGCCTCCT 1208
||| || |||| | ||||| ||| |||| ||| || ||||||||| |||||| |||||||
Sbjct 864 AGATCCTTATT-TCCCTCCACCTGGTCAGTCC-CAGCCACCTCCAACAAACCAGCCTCCT 921
Query 1209 TACCAA---GCTCCT-CAGACCCAAACGCCGCATCAACCATCTTACCAGTCACCGCCTCA 1264
|| ||| ||||| || ||||| | | |||||||||| ||||||||||||| |||||
Sbjct 922 TATCAACCTCCTCCTCCA-ACCCAGTCACTGCATCAACCACCTTACCAGTCACCTCCTCA 980
Query 1265 GCAGCCACAGTACCCCCAACAGCCA----C-CA---CCATCA----TCAGGCTACAACCC 1312
|||||||| ||||| ||||||||| | || ||| || ||||||||||| ||
Sbjct 981 ACAGCCACAATACCCACAACAGCCACCTCCTCAGCTCCAACACCCGTCAGGCTACAA-CC 1039
Query 1313 CGAAGAACAACCACCATA-TCAGATGCAATCTTACCCGCCAAACCCTCCTCGTCAAC-AG 1370
|| || ||||||| || | | |||||||||||||||||||||||||||||||| |
Sbjct 1040 CG--GAGGAACCACCTTACCCTCA-GCAATCTTACCCGCCAAACCCTCCTCGTCAACCAC 1096
Query 1371 C--C--A-CC---TGCTGGTTCTACCCCTTCTCAACAGTTCTACAACCCTCCTC-AACCA 1421
| | | || | ||||||| |||| |||||||||| ||||||| ||||| ||| |
Sbjct 1097 CTTCTCATCCACCTCCTGGTTCCGCCCCATCTCAACAGTACTACAACGGTCCTCCAAC-A 1155
Query 1422 CAACCATCAATGTACGATGGAGCGGGTGGTAGATCTAATTCAGGTTTTCCGTCCGGCTAC 1481
| ||||||||||||||||||| | || || ||||| ||||||||||| || ||||| ||
Sbjct 1156 CCACCATCAATGTACGATGGATCAGGCGGCAGATCCAATTCAGGTTTCCCTTCCGGGTA- 1214
Query 1482 TTGTC-TGAACCTTAC 1496
|| | |||||| |||
Sbjct 1215 TTCCCCTGAACCGTAC 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5