BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01570.1
Length=814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477358 jgi|Araly1|477358|fgenesh2_kg.3__59__AT3G01570.1 1151 0.0
> Ahg477358 jgi|Araly1|477358|fgenesh2_kg.3__59__AT3G01570.1
Length=783
Score = 1151 bits (623), Expect = 0.0
Identities = 735/787 (93%), Gaps = 15/787 (2%)
Strand=Plus/Plus
Query 26 ATTAAGCTTGAACTTGGAGGATCAATGGCCGACGTTCGCACACACTCGCACCAGCTTCAA 85
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 3 ATTAAGCTTGAATTTGGAGGATCAATGGCCGACGTTCGCACACATTCTCACCAGCTTCAA 62
Query 86 GTGCACCCTCAACGCCAGCATGAAGGAGGCATCAAAGTCCTTTATCCTCAGAGTGGCCCT 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GTGCACCCTCAACGCCAGCATGAAGGAGGCATCAAAGTCCTTTATCCTCAGAGTGGCCCT 122
Query 146 TCTTCCACTCAGGTGCTAGCCGTGTTTGTCGGTGTACCGATAGGAGGAACGCTGCTGACT 205
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 123 TCTTCCACTCAGGTGCTAGCCGTGTTTGTCGGTGTACCGGTAGGAGGGACGCTGCTGACT 182
Query 206 ATAGCCGGTTTGACATTAGCCGGTTCGGTTATAGGACTAATGCTAGCATTCCCGTTGTTT 265
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 183 ATAGCCGGTTTAACATTAGCCGGTTCGGTTATTGGACTAATGCTAGCATTCCCGTTGTTC 242
Query 266 CTCATCTTTAGTCCGGTTATTGTACCAGCAGCCTTTGTCATCGGTCTAGCTATGACTGGA 325
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 243 CTCATCTTCAGTCCGGTTATTGTACCAGCAGCCTTTGTGATCGGTCTAGCTATGACCGGA 302
Query 326 TTCCTGGCTTCAGGGGCCATAGGTCTCACCGGACTATCATCCATGTCGTGGGTACTCAAC 385
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 TTCCTGGCGTCAGGGGCCATAGGTCTCACCGGACTATCATCCATGTCGTGGGTACTCAAC 362
Query 386 TACATCCGCCGGGCCGG-GCAGCATATCCCGGAGGAGCTTGAGGAAGCGAAGCATCGTTT 444
|||||||||||||| || | ||||||| |||||||||||||||||||||||||| |||||
Sbjct 363 TACATCCGCCGGGCTGGAG-AGCATATTCCGGAGGAGCTTGAGGAAGCGAAGCAGCGTTT 421
Query 445 GGCTGACATGGCCGAGTATGTGGGACAGAGGACTAAAGATGCTGGACAAACCATAGAAGA 504
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGCTGACATGGCTGAGTATGTGGGACAGAGGACTAAAGATGCTGGACAAACCATAGAAGA 481
Query 505 CAAAGCTCATGATGTCCGAGAGGCCAAGACTTTTGATGTCCGAGACCGAGACACCACCAA 564
||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 482 CAAAGCTCACGATGTCCGAGAGACCAAGACTTTTGATGTCAGAGACCGAGACACCACCAA 541
Query 565 GGGTACTCATAATGTCCGAGACACCAAGACTACATAAAGCGTGTGTTTTGAGTGAACCAT 624
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 542 GGGTACTCATAATGTCCGAGACACCAAGACTACATAAAGCGTGTGTTCTGAGTTAACCAT 601
Query 625 GTTGAATaaaaaaaaTCGACTGTTAGTTCTTAATGTTCATGTGTTTTGAGTGTTTGTATT 684
| ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 602 GGTGAATAAAAAAGATCGACTGCTAGTTCTTGATGTTGGTGTGTTTTGAGTGTTTGTATT 661
Query 685 TGCTTGTAAGCTTATTTTGGGTTTAGTTTCCTCTTCtttttttttCCTGTAACAATAATG 744
||||||||||||| ||| | |||||||||||| || |||||| | ||||||||||||
Sbjct 662 TGCTTGTAAGCTTCTTT-GAGTTTAGTTTCCT-TT-TTTTTTATG--TGTAACAATAATA 716
Query 745 TCGGAGACATTTTGCTTCTAT-----C---AGTTCTTTGTTTTATTGATGCGTAATAGAT 796
|| ||||| |||||||||||| | |||| ||| |||||||||||||||||| ||
Sbjct 717 TCAGAGACTTTTTGCTTCTATAGTTGCGTCAGTTATTTATTTTATTGATGCGTAATAAAT 776
Query 797 TTGAAAT 803
|||||||
Sbjct 777 TTGAAAT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30078981513
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5