BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01600.1
Length=1307
Score E
Sequences producing significant alignments: (Bits) Value
Ahg902923 jgi|Araly1|902923|Al_scaffold_0003_51 1692 0.0
Ahg933322 jgi|Araly1|933322|scaffold_401310.1 361 9e-99
> Ahg902923 jgi|Araly1|902923|Al_scaffold_0003_51
Length=1074
Score = 1692 bits (916), Expect = 0.0
Identities = 1014/1061 (96%), Gaps = 8/1061 (1%)
Strand=Plus/Plus
Query 201 AGGGCTTGGATTGTCGATGGTCGAGGAATTGCAGCCAAAGTTAAAAATGCCTCTCTTTCT 260
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 10 AGGGCTTGGATTGTCGATGGCCGAGGAATTGCAACCAAAGTTAAAAATGCCTCTCTTTCT 69
Query 261 TCAGCTTTGCAGATCCAAGACTGTGGAGCTCATATAAAATGCCCCAACTGCACTTACCGC 320
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct 70 TCAGCTTTGCAGATCCAAGACTGTGGAGCTCATATCAATTGCCCCAACTGCTCTTACCGC 129
Query 321 ATTGACAATAGCAATGTACTGATTCCATGGCCTGGCCTTCCTAAAGGTGTCAAGTTTGAG 380
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ATTGACAACAGCAATGTACTGATTCCATGGCCTGGCCTTCCTAAAGGTGTCAAGTTTGAG 189
Query 381 CCAACTGATGAGGACATTATCGAATTTTTGGAAGCTAAATGTGGGATTGGTGGCTCTGAA 440
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 190 CCAGCCGATGAGGACATTATCGAATTTTTGGAAGCTAAATGTGGGATTGGGGGCTCTGAA 249
Query 441 CCTCATGTGCTTATCGAAGAGTTCATTCGTCCTGTCACTGAAGATGTTGGAATCAATTAC 500
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 CCCCATGTTCTTATCGAAGAGTTCATTCGTCCTGTCACTGAAGATGTTGGAATCAATTAC 309
Query 501 ACTCACCCTCAAAACCTTCCTGGTGCAAACAAAGATGGAGTGAGTGTCTTCTTCTTTCAC 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 ACTCACCCTCAAAACCTTCCTGGTGCAAACAAAGATGGAGTGAGTGTCTTCTTCTTTCAC 369
Query 561 AAGACAGTGCAGGCATATGGAACAGGACAGAGGAAACGCAGAAAGATCACACCGACACTT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 370 AAGACAGTGCAGGCATATGGAACAGGACAGAGGAAACGCAGAAAGATCACACCCACACTT 429
Query 621 GTGAACGATGAACCAGTTCGTTGGCACAAGACAGGCAGAACCAAACCTGTGATGCTCAGT 680
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 430 GTGAACGATGAACCAGTTCGTTGGCACAAGACAGGCAGAACCAAACCTGTGCTGCTCAAT 489
Query 681 GGAGTCCAAAGGGGTTGCAAGAAGATCATGGTGCTCTACAAGAGCGCTAGAAAGGGAACG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 490 GGAGTCCAAAGGGGTTGCAAGAAGATCATGGTGCTCTACAAGAGCGCTAGAAAGGGATCG 549
Query 741 AAGCCCGAGAAATCAAACTGGGTTCTGCATCAATACCATCTAGGAACAGAAGG-AAAGGA 799
||||| |||||||||||||||||||||||||| |||||| ||||||||||||| |||| |
Sbjct 550 AAGCCTGAGAAATCAAACTGGGTTCTGCATCAGTACCATTTAGGAACAGAAGGGAAAGAA 609
Query 800 GATAGGAGACTATGTTGTTTCCAAGATCACATATCAGCAGCAGAAGCTTGGGGAAAATCC 859
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 610 G-TAGGAGACTATGTTGTTTCCAAGATCACATATCAGCAGCCGAAGCTTGGGGAAAATCC 668
Query 860 TGATGAAGGTGAGAGTAGTTCCGGGGTTAGAGGTGGCCCAACAACACCAAAGACGAATAC 919
|||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct 669 TGATGAAGGTGAGAGT--T-CCGGGGTTAGAGGTGGCCCAAGAACACCAAAGACGAATAC 725
Query 920 TCCTACACCACCTAGCCTTGTAGATGGTGTCGCTGGAGATGAAGAAGCTTTTGATGATTT 979
|||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 726 TCCTACGCCACCTAGCCTTGTAGATGGCGTTGCTGGAGATGAAGAAGCTTTTGATGATTC 785
Query 980 AAAGATGTTTGATCCATTTTTTGAGGAACTGGACAGCATTCCTGAAGCTGCTTTAGGGAA 1039
||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 786 AAAGATGTTCGATCCATTTTTTGAGGGACTTGACAGCATTCCTGAAGCTGCTTTAGGGAA 845
Query 1040 GATGTGGTCCAAAAAAGCTCGAATGGATGAGGAATTTGTTGTGAACCTAAGTGAAGATAA 1099
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 846 GATGTGGTCCAAAAAAGCTCGAATGGATGAGGAATTTGTTGTAAACCTTAGTGAAGATAA 905
Query 1100 CTTAATATGCGACGAAAGCATGGAAGCTTCGTCTCTTTGGGAAAATCAGGTTCTCCCCAA 1159
||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 906 CTTAACATGCGACGAAAGCATTGAAGCTTCGTCGCTTTGGGAAAATCAGGTTATCCCCAA 965
Query 1160 TCCTA---GCCTTGGAACTGTTGGGGACTTCGATGGTTTTTCGATATCAGATCTGGAGAA 1216
||||| |||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 966 TCCTACTAGCCTGGGAACTGTTGGGGAATTCGATGGTTTTTCGATTTCAGATCTGGAGAA 1025
Query 1217 TGCAGATTTGGGGACTCCCCCTGATTTCCTCACTGTAAGAT 1257
||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1026 TGCAGATTTAGGGACTCCCCCTGATTTGCTCACTGTAAGAT 1066
> Ahg933322 jgi|Araly1|933322|scaffold_401310.1
Length=328
Score = 361 bits (195), Expect = 9e-99
Identities = 234/252 (93%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 999 TTTGAGGAACTGGACAGCATTCCTGAAGCTGCTTTAGGGAAGATGTGGTCCAAAAAAGCT 1058
|||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 TTTG-GG-ACTTGACAGCATTCCTGAAGCTGCTTTAGGGAAGATGTGGTCCAAAAAAGCT 137
Query 1059 CGAATGGATGAGGAATTTGTTGTGAACCTAAGTGAAGATAACTTAATATGCGACGAAAGC 1118
||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 138 CGAATGGATGAGGAATTTGTTGTAAACCTTAGTGAAGATAACTTAACATGCGACGAAAGC 197
Query 1119 ATGGAAGCTTCGTCTCTTTGGGAAAATCAGGTTCTCCCCAATCCTA---GCCTTGGAACT 1175
|| ||||||||||| |||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 198 ATTGAAGCTTCGTCGCTTTGGGAAAATCAGGTTATCCCCAATCCTACTAGCCTGGGAACT 257
Query 1176 GTTGGGGACTTCGATGGTTTTTCGATATCAGATCTGGAGAATGCAGATTTGGGGACTCCC 1235
|||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 258 GTTGGGGAATTCGATGGTTTTTCGAT-TCAGATCTGGAGAATGCAGATTTAGGAACTCCC 316
Query 1236 CCTGATTTCCTC 1247
|||||||| |||
Sbjct 317 CCTGATTTGCTC 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48873579594
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5