BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01620.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477353 jgi|Araly1|477353|fgenesh2_kg.3__54__AT3G01620.1 2141 0.0
> Ahg477353 jgi|Araly1|477353|fgenesh2_kg.3__54__AT3G01620.1
Length=1474
Score = 2141 bits (1159), Expect = 0.0
Identities = 1390/1498 (93%), Gaps = 29/1498 (2%)
Strand=Plus/Plus
Query 1 AAACGGCTATAATTGGCGTTACAGTTTTGGTGAAAGGAGAAGGATCGATTTCAAGACAGA 60
||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||
Sbjct 1 AAACGGCTATAATTGGCGTTATAGTTACGGTGAGAGGAGAAGGATCGATTTGAAGACAGA 60
Query 61 AATTCTCGGATTTGATCCTCCTCCGAGAACTAGACCACTCTCTCTTGtttttctttttct 120
|||||||||||||||||||||||||||| ||||| | ||| ||| | || || |||||||
Sbjct 61 AATTCTCGGATTTGATCCTCCTCCGAGACCTAGA-C-CTC-CTC-T-TTCTTGTTTTTCT 115
Query 121 gtagattttctgtttattca-aa-aacttattttttt-cGTCCAAAATTTGACTTTCCTG 177
|||||||||||||| |||| || || ||||||| ||| ||| |||||||||||||
Sbjct 116 TTAGATTTTCTGTTTCTTCATAATTTTTTTTTTTTTTCCGTTCAATATTTGACTTTCCTT 175
Query 178 AGAACTAATCATCATCATCATGTCCGATGGTTATCGTAGTTCTAAGAAGACGGATACTAT 237
| || | || |||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 176 TG----AA-C--CA--ATCATGTCCGATGGTTATTGTAATTCTAAGAAGACTGATACTAT 226
Query 238 CTGCGAAGATGTTTGTGGACAGGAAGGTTCTCGAGCAGGCAAGGCCATTTCAAGGCTTAG 297
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 227 CTGCGAACATGTTTGTGGACAGGAAGGTTCTCGAGCAGGCAAGGCCATGTCAAGGCTTAG 286
Query 298 ATGTGTTCTAAGAGGACTCGATTTCAAAACATTCCTGTTTCTCTTCACTCTCCTGCCACT 357
|||||||||||||||||||||||| |||| || |||||||||||||||||||| ||| |
Sbjct 287 ATGTGTTCTAAGAGGACTCGATTTTGAAACTTTTCTGTTTCTCTTCACTCTCCTCCCAGT 346
Query 358 CTTCATCTTCGGCATCTATCTACACGGCCAGAAGATCACATATTTCTTGAGACCTCTATG 417
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 347 CTTCATCTTCGGCATCTATCTACACGGCCAGAAGATTACATATTTCTTGAGACCTCTATG 406
Query 418 GGAATCACCTCCTAAACCTTTTAACATCCTTCCGCATTACTATCACGAGAACACTTCCAT 477
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 407 GGAATCACCTCCTAAACCTTTTAACATCCTTCCTCATTACTATCACGCCAACACTTCCAT 466
Query 478 GGAATTGCTCTGCAATCTTCATGGCTGGAAACTCCGCGAATCTCCAAGAAGAGTCTTTGA 537
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 467 GGAAATGCTCTGCAATCTTCATGGCTGGAAACTCCGTGAATCTCCAAGAAGAGTCTTTGA 526
Query 538 TGCTGCCTTGTTCAGTAACGAGATCGATATGCTCACTCTCCGTTGGAATGAGTTAAATCC 597
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 527 TGCTGTCTTGTTCAGTAACGAGATCGATATGCTCACTCTCCGTTGGAATGAGTTAAACCC 586
Query 598 TTACATTACTCAGTTTGTGCTTCTCGAATCTAACTCAACTTTCACCGGACTGTCAAAACA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CTACATTACTCAGTTTGTGCTTCTCGAATCTAACTCAACTTTCACCGGACTGTCAAAACC 646
Query 658 GTTGGCTTTCGCAGACAACAGGGAGAAGAATTTCAAATTCGTTGAGCCAAGGCTGACTTA 717
||||||||||||||||||| |||||||||||||| |||| | ||| ||| ||||||||
Sbjct 647 GTTGGCTTTCGCAGACAACCGGGAGAAGAATTTCCAATTTGCCGAGTCAAAACTGACTTA 706
Query 718 TGGGAACGTTGGAGGAAGGTTCAAGAAAGGCGAAAACCCCTTTGTGGAGGAATCATTCCA 777
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 707 TGGGCACGTTGGAGGAAGGTTCAAGAAAGGCGAAAACCCCTTTGTGGAAGAATCATTCCA 766
Query 778 AAGGCTTGCACTTGACCAGTTGATCAAGCTCGCAGGTATAAAAGAAGATGATCTTTTGAT 837
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 767 AAGGCTTGCACTTGACCAACTGATCAAGCTCGCAGGTATAAAAGAAGATGATATTTTGAT 826
Query 838 AATGTCGGATGTCGATGAGATCCCGAGCGGCCATACCATCAATCTGCTTAGATGGTGTGA 897
|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 827 AATGTCGGATGTCGATGAGATCCCCAGCAGTCATACCATCAATCTGCTTAGATGGTGTGA 886
Query 898 CGGGTTCCCACCGATCCTTCATCTTCAGTTGAGAAACTACCTCTACTCATATGAGTACTA 957
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CGGATTCCCACCCATCCTTCATCTTCAGTTGAGAAACTACCTCTACTCATATGAGTACTA 946
Query 958 TGTCGATAGCAAAAGCTGGAGAGCTTCGGTTCATCTCTACAAGCCTGGGAAAACTCGGTG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TGTCGATAGCAAAAGCTGGAGAGCTTCGGTTCATCTCTACAAGCCTGGGAAAACTCGGTA 1006
Query 1018 CGCTCATTTCCGGCAAAGCAACAATCTTTTGACAGATTCAGGTTGGCATTGCAGTTTCTG 1077
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1007 TGCTCATTTCCGGCAAAGCGACAATCTTTTGACAGATTCAGGTTGGCATTGCAGTTTTTG 1066
Query 1078 TTTCAGACACATCAATGACTTCGTGTTCAAGATGAAAGCTTATAGCCATACTGACCGGGT 1137
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1067 TTTCAGACACATCAATGATTTCGTATTCAAGATGAAAGCTTATAGCCATACCGACCGGGT 1126
Query 1138 TAGATTCTTACATTATCTGAACCCGAGACGAATCCAAGACATTATCTGCAAAGGAACTGA 1197
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1127 CAGATTCTTACATTATCTGAACCCGAGACGAATCCAAGATGTTATCTGCAAAGGAACTGA 1186
Query 1198 TCTTTTCGATATGCTTCCTGAAGAACACACATTCAGGGAGATTATCGGCAAACTTGGTCC 1257
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1187 TCTTTTCGATATGCTTCCTGAAGAACACACATTCAGGGAGATTATCGGGAAACTTGGTCC 1246
Query 1258 GATTCCACGGTCTTATTCAGCTGTTCATCTCCCTGGATACTTGATTCAGAATGCTGATAG 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1247 GATTCCACGGTCTTATTCAGCTGTTCATCTCCCTGGATACTTGATTCAGAATGCTAATAA 1306
Query 1318 CTACAAGTACTTATTACCTGGGAACTGCAAACGAGAATCTGGCTGATAAATAAAGGACCT 1377
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1307 CTACAAGTACTTATTACCTGGGAACTGCAAACGAGAATTTGGCTGATAAATAAAGGACCT 1366
Query 1378 CTACTTACCACTTATCAGTCCCTCTAGTTGTCTTTAGCTTTTTGTTCTCGCTTTCTCTAT 1437
||||||| |||| | | |||| | ||||||||||||| |||||| ||||||||||
Sbjct 1367 CTACTTATCACT---C---C--TCTA-TAGTCTTTAGCTTTT-GTTCTCTCTTTCTCTAT 1416
Query 1438 CTCATCTCTGTACATACAACTT--ACAGTATCAGAATTTTTGTAGCGTTACGGATCCG 1493
|||||||||| ||||||| || ||||| |||||||||||||||| |||||||||||
Sbjct 1417 ATCATCTCTGTGCATACAATTTTTACAGTCTCAGAATTTTTGTAGCATTACGGATCCG 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5