BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01630.1
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477352 jgi|Araly1|477352|fgenesh2_kg.3__53__AT3G01630.1 2577 0.0
> Ahg477352 jgi|Araly1|477352|fgenesh2_kg.3__53__AT3G01630.1
Length=1783
Score = 2577 bits (1395), Expect = 0.0
Identities = 1653/1772 (93%), Gaps = 39/1772 (2%)
Strand=Plus/Plus
Query 5 ACGACGGCGGAGGAGGAAGAAAC-AACCATGCGGAAACAGCCGCCTTCGCCTCCAAAGCC 63
|||||||||||||| | | ||| ||||||||||||||| | | || ||| ||||
Sbjct 1 ACGACGGCGGAGGA-G--G-AACTAACCATGCGGAAACA---G-C--CG---CCACAGCC 47
Query 64 ACCACGTGTCAATTCTATGCTCCAATGGTGGCGGAGATGGACGGTGTTGGTGGCCGCTAT 123
||| | |||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 48 ACCGCCTGTCAATTCTATGCTCCATTGGTGGCGGAGATGGACGGTGTTGGTGGCGGCTAT 107
Query 124 CTGGATTCAAGCATTCACCGGCACGAACTTCGATTTCTCTGCCTACTCTTCCGACATGAA 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 108 CTGGATTCAAGCATTCACCGGCACCAACTTCGATTTCTCTGCCTACTCTTCCGACATGAA 167
Query 184 GTCTTCCATGGGGGTTTCTCAATCTCGGCTTAACTACATGGCGGTTGCTTCAGATTTGGG 243
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 168 GTCGTCCATGGGGGTTTCTCAGTCGCGGCTTAACTACATGGCGGTTGCTTCAGATTTGGG 227
Query 244 TAAAGCATTGGGTTGGTCTTCTGGTTTCGCCATTGCCTATTTCCCTG-TCTCCGGCGTGC 302
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 228 TAAAGCATTGGGTTGGTCTTCAGGTTTCGCCATTGCCTATTTCCCTGTTC-CCGGCGTGC 286
Query 303 TTTTCGCTGCCGCCGCAATGGGACTCGTCGGTTACGGTGTCCAGTGGTTATCCATCGCCG 362
|||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||
Sbjct 287 TTTTCGCTGCCGCCGCAATGGGGCTCGTCGGTTACGGCGTCCAGTGGTTAGCCATCGCCG 346
Query 363 ATGTGATCGATCTACCTTACTCTCTGGTTCTGGTTTGCTGCTCCTTAGCCGGGTTAAGCA 422
||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 347 ATGTGATCGATCTGCCTTACTCTCTGGTTTTGGTGTGCTGCTCCTTAGCCGGGTTAAGCA 406
Query 423 TCTGCTGGTTCAACACCGTCAGCTTCATCCTCTGCATTCGACATTTCAAAGCGAACCACT 482
|||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||
Sbjct 407 TCTGCTGGTTCAACACCGTCTGCTTCATCCTCTGCATTCGACATTTCGAAGCAAACCACT 466
Query 483 CGT-TGGCCCTGTCTCTCGTTGTGAGTTTCAACGGAATCAGTGCCGCGTTGTACACGCTT 541
| | | || |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 467 C-TCTCGCGTTGTCTCTCGTTGTGAGTTTCAACGGAATCAGTGCTGCGTTGTACACTCTT 525
Query 542 GGCCATGAAGCCATTAGTGGGAAATCATCGGCAAGCTCTGATATTTACCTTCTCCTTAAC 601
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 GGCCATGAAACCATTAGTGGGAAATCATCGGCAAGCTCTGATATTTACCTTCTCCTTAAC 585
Query 602 TCTCTCATCCCTCTGATCGTCTCTGTTTTAGCCCTTTGGCCGGTTCTTACTAACCCTAAT 661
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct 586 TCTCTCATCCCTCTGATCGTCTCTGTTTTAGCCCTTTGGCCTGTCCTTACTAACCCTAGT 645
Query 662 TCCTCTGAAACCGATACTACG-CGAACGCATGACGAAACCAGAATCTTCGTAGTCTTCAA 720
||||||||| ||||||||| | ||||| |||||||||||| || |||| ||||| |||||
Sbjct 646 TCCTCTGAATCCGATACTA-GACGAACCCATGACGAAACCCGAGTCTTTGTAGTTTTCAA 704
Query 721 TGTCTTAGCCTTAGTTACATGCTTTTACCTTCTCTTGCCTTCCTCAGGCACCTACTTAGC 780
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TGTCTTAGCCTTAGTCACATGCTTTTACCTTCTCTTGCCTTCCTCAGGCACCTACTTAGC 764
Query 781 CTCATCACCTCGTTGGCATTTCCTCGGAGCTATTTTCCTTCTCCTTTTCCCATTGTGCGT 840
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 765 TTCATCACCTCGTTGGCATTTCCTCGGAGCCATTTTCCTTCTCCTTTTCCCATTGTGCGT 824
Query 841 CCCGTTTCTCGACTATATTCACCGTGCTCTCGAGTCCTGTTTCCACCACCACAGCTCTGG 900
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 825 CCCGTTTCTCGACTATATTCACCGCGCTCTCGAGTCCTGTTTCCACCATCACAGCTCTGG 884
Query 901 CTATGCAGCGGTTAACATTGAGGAGCCCAAGATCCTCAAAATCAAAAGTCAGAAGAGT-A 959
|||||||| |||||||||||||||||||||||||||||||| |||| ||| || |
Sbjct 885 CTATGCAGTGGTTAACATTGAGGAGCCCAAGATCCTCAAAA------GTCAAAAG-GTTA 937
Query 960 ATGCGGAGGAGGAAAGTGAT-CAAGTGAGACTAGGAGATGAACATTCTCTCGGAATGCTT 1018
||| |||||||||| || || || |||||||| |||||||||||||||||||||||||||
Sbjct 938 ATGTGGAGGAGGAATGTAATACA-GTGAGACTCGGAGATGAACATTCTCTCGGAATGCTT 996
Query 1019 GTTCGTAAGCTTGAGTTTTGGTTATACTACGTAGCTTATTTCTGCGGCGGCACGATCGGT 1078
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 997 GTTCGTAGGCTTGAGTTTTGGTTATACTATGTAGCTTATTTCTGCGGCGGCACGATCGGT 1056
Query 1079 CTTGTTTATAGCAACAACTTAGGACAGATCGCTCAGTCTCTAGGACAAAGCAGCTCAAAC 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1057 CTTGTTTATAGCAACAACTTAGGACAGATCGCTCAGTCTCTAGGACAAAGCAGCTCGAAC 1116
Query 1139 GCTAAATCCTTAGTTACACTCTTCTCTGCCTTCTCCTTTCTCGGAAGATTGCTCTCCTCT 1198
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GCTAAATCCTTAGTCACACTCTTCTCTGCCTTCTCCTTTCTCGGAAGATTGCTCTCCTCT 1176
Query 1199 GCACCTGACTTCACACGCAAGAAGCTAAAATACTTGACAAGAACAGGCTGGTTCACGATT 1258
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||
Sbjct 1177 GCACCTGACTTCACACGCAAGAAACTAGACTACTTGACAAGAACAGGCTGGTTCACCATT 1236
Query 1259 TCGCTACTGCCAACACCTTTGGCATTCTTCATCCTCGCGTATTCACCCAAGACCAACCAG 1318
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1237 TCGCTACTGCCAACACCTTTGGCCTTCTTCATCCTCGCGTATTCTCCCAAGACCAACCAG 1296
Query 1319 ACCGCGCTACTAGAAGTTGCGACAGCACTTATCGGGTTAAGCTCGGGGTTTGTGTTTGCG 1378
|| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1297 ACGGCGCTATTAGAAGTTGCTACAGCACTTATCGGGTTAAGTTCGGGGTTTGTGTTTGCG 1356
Query 1379 GCTGCAGTTTCCATAACTTCCGAACTCTTTGGACGCAACAGTGTCGGTGTCAACCAGAAC 1438
||||| ||||| |||||||| || |||||||| ||||||||||| |||||||||||||||
Sbjct 1357 GCTGCCGTTTCTATAACTTCAGACCTCTTTGGTCGCAACAGTGTGGGTGTCAACCAGAAC 1416
Query 1439 ATCCTCATCACAAACATTCCCATAGGATCTCTCTTCTACGGCTACATGGCTGGGTCTGTC 1498
||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 1417 ATCCTTATCACAAACATTCCCATCGGATCGCTCTTTTACGGCTACATGGCTGGGTCTGTC 1476
Query 1499 TATGACACAAATGCCAGCCTCGGCAGGAAATCTGTGGTGGCTGACTCGGTTGTTTGCGTA 1558
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1477 TATGACACAAATGCCAGCCTCGGCAGGAAATCTGTTGTCTCTGACTCGGTTGTTTGCGTA 1536
Query 1559 GGAAGAAAGTGTTATTTCGTAACgtttttgttttggggttgtttgtctgttttggggttt 1618
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 GGAAGTAAGTGTTATTTCGTAACGTTTTTGTTTTGGGGTTGTTTGTCTGTTTTGGGGTTT 1596
Query 1619 gtatgtagcttgtttctgtttATTAGAACCAGACCGGTTTATCACCGGTTAAAATT---G 1675
||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 1597 GTATGTAGCGTGTTTCTGTTTATTAGAACCAGAGCGGTTTATCACCGGTTAGAATTTTTG 1656
Query 1676 AACAGAATGTAAAACTGTGTAGAG--TATTATCAGCTGCCTGCTTATAATGGTATAGATT 1733
||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||
Sbjct 1657 AACAGAATGTAAAGCTGTGTAGAGAGTGTTATCAGCTGCCT----ATAATGGTATAGATT 1712
Query 1734 GGTAGGATCCAAGAAAAGAGTGACCATTGCCT 1765
||| ||||||||||||||||| ||||||||||
Sbjct 1713 GGTCGGATCCAAGAAAAGAGTAACCATTGCCT 1744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5