BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01650.1
Length=1785
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927592 jgi|Araly1|927592|scaffold_300049.1 1923 0.0
Ahg488284 jgi|Araly1|488284|fgenesh2_kg.6__1418__AT5G14420.2 832 0.0
Ahg332615 jgi|Araly1|332615|fgenesh1_pm.C_scaffold_8001958 167 3e-40
> Ahg927592 jgi|Araly1|927592|scaffold_300049.1
Length=1335
Score = 1923 bits (1041), Expect = 0.0
Identities = 1179/1244 (95%), Gaps = 16/1244 (1%)
Strand=Plus/Plus
Query 358 TGCTCCCGCTCCATCTCCGGCTTCCAGTTATGGCCATCAGTATAGTCAAGA-G-GGCTAT 415
|||||| |||||||||||| ||||||||||||||||||| | || || ||| | || ||
Sbjct 87 TGCTCCTGCTCCATCTCCGTCTTCCAGTTATGGCCATCA-T-TA-TC-AGATGCCGC-AT 141
Query 416 -G-CATCA--GC-A-GCATCACAGCCTAATTATCCTCCACCTCCTTCACAGAGTCAAGTT 469
| || | || | |||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 142 AGTCAAGAGGGCTATGCATCACAGCCTAATTATCCTCCACCGCCTTCACAGAGTCATGAT 201
Query 470 GCTGACAGGAAGAAATTTGATCGGAGGTATTCCAAAATATCGGATAACTACTCTTCTTTA 529
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 202 GCTGACCGGAAGAAATTTGATCGGAGGTATTCGAAAATATCGGATAACTACTCTTCTTTA 261
Query 530 CTGCAGGTGTCCGAGGCTCTAGGCCGTGCAGGTCTTGAATCTTCTAATCTAATCGTTGGT 589
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 262 CTGCAGGTGTCGGAGGCTCTAGGCCGTGCAGGTCTTGAATCTTCAAATCTAATCGTTGGT 321
Query 590 ATTGATTTCACCAAGAGCAATGAATGGACAGGGGCCAAGTCCTTCAATAGGAAAAGCTTG 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 ATTGATTTCACCAAGAGCAATGAATGGACAGGGGCCAAGTCCTTCAATAGGAAAAGCTTG 381
Query 650 CATCACTTGAGCAATACCCCGAATCCATACGAGCAAGCAATTACTATCATTGGAAGAACC 709
|||||||| ||||||||||||||||||||||| || ||||| |||||||| |||||||||
Sbjct 382 CATCACTTAAGCAATACCCCGAATCCATACGAACAGGCAATAACTATCATAGGAAGAACC 441
Query 710 TTAGCCGCCTTTGACGAGGATAACTTAATTCCTTGTTATGGTTTTGGAGACGCATCAACT 769
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 442 TTAGCCACCTTTGACGAGGATAACTTAATTCCTTGTTATGGTTTTGGAGACGCAACAACT 501
Query 770 CATGATCAAGACGTGTTTAGTTTCTATCCAGAGGGAAGATTCTGTAATGGATTTGAGGAA 829
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 502 CATGATCAAGATGTGTTTAGTTTCTATCCAGAGGGTAGATTCTGTAATGGATTTGAGGAA 561
Query 830 GTATTGGCTCGTTATAGAGAAATTGTACCTCAGCTTAAGCTCGCAGGACCAACTTCTTTT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 562 GTATTGGCTCGTTATAGAGAAATTGTACCTCAGCTTAAGCTCGCAGGACCAACATCTTTT 621
Query 890 GCCCCGATCATTGAAATGGCAATGACAGTGGTTGAGCAGAGTAGTGGCCAATATCATGTG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GCCCCGATCATTGAAATGGCAATGACAGTGGTTGAGCAGAGTAGTGGCCAATATCATGTG 681
Query 950 TTAGTGATTATAGCTGATGGCCAGGTCACAAGAAGTGTCGATACCGAACACGGGCGGCTA 1009
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 682 TTAGTGATTATAGCTGATGGCCAGGTCACAAGAAGTGTCGATACCGAACATGGGCGGCTA 741
Query 1010 AGTCCGCAAGAACAGAAGACAGTAGATGCAATTGTGAAAGCAAGTACCCTTCCTTTGTCA 1069
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 742 AGTCCGCAAGAACAGAAGACGGTCGATGCAATTGTGAAAGCAAGTACCCTTCCTTTGTCA 801
Query 1070 ATAGTCTTAGTTGGGGTCGGGGATGGACCATGGGACATGATGCAGGAATTTGATGATAAC 1129
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 ATAGTCTTAGTCGGGGTCGGGGATGGACCATGGGACATGATGCAGGAATTTGATGATAAC 861
Query 1130 ATACCTGCCCGAGCTTTCGATAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAAG 1189
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 862 ATACCTGCCCGAGCTTTCGATAACTTCCAATTTGTGAACTTCACAGAGATCATGTCAAAG 921
Query 1190 AACAAAGACCAGTCTCGGAAGGAGACAGAGTTTGCGCTGTCTGCTCTCATGGAGATCCCT 1249
||||||||||||||||||||||||||||| || ||||| |||||||| |||||||| |||
Sbjct 922 AACAAAGACCAGTCTCGGAAGGAGACAGAATTCGCGCTCTCTGCTCTAATGGAGATTCCT 981
Query 1250 CCACAGTACAAAGCAACGATAGAGCTTAACCTTTTAGGGGTAAGAAATGGAAATATCCCA 1309
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 982 CCACAGTACAAAGCAACGATAGAGCTTAACCTTTTAGGGGGAAGAAATGGGAGTATCCCA 1041
Query 1310 CAGAGAATCCCACTTCCGCCACCGGTGCAGAGTGGATCATCATTCTCTAGTTCCCGGATA 1369
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1042 GAGAGAATCCCACTTGCGCCACCGGTGCAGAGCGGATCATCATTCTCTAGTTCCAGGATA 1101
Query 1370 CCGAATTTTGAACCGAGTGTACCTCCTTATCCATTTGAGAGCAAGCAAAT--G-AGTAGT 1426
|||| |||||||||||| |||||| |||||||||||||||||||||| || | ||| ||
Sbjct 1102 CCGAGTTTTGAACCGAGCGTACCTACTTATCCATTTGAGAGCAAGCATATGAGCAGTGGT 1161
Query 1427 GCAGACGATATTCAGCTATGTCCGATATGTCTGAGCAACCCGAAAAACATGGCGTTTGGT 1486
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GCAGACGATAACCAGCTATGTCCGATATGTCTGAGCAACCCGAAAAACATGGCGTTTGGT 1221
Query 1487 TGTGGCCATCAGACTTGTTGTGAATGCGGACCAGATCTTAAAGTGTGTCCTATTTGTCGT 1546
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1222 TGTGGCCATCAGACTTGTTGTGAATGCGGACCAGATCTTAAAGTGTGTCCGATTTGTCGT 1281
Query 1547 GCGCCGATCCAGACCAGAATCAAGCTTTACTAACAACACCATTG 1590
|| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1282 GCCCCGATCCAGACCAGAATCAAGCTCTACTAACAACACCATTG 1325
Score = 169 bits (91), Expect = 8e-41
Identities = 164/194 (85%), Gaps = 25/194 (13%)
Strand=Plus/Plus
Query 168 CTCATCAAAGTTATCCTCAATATGGACCTGATAGCTACAACTATCctcctccacccactt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCATCAAAGTTATCCTCAATATGGACCTGATAGCTACAACTATCCTCCTCCACCCACTT 60
Query 228 atgctcccgctccatctcctgctcctgct-cctgctccggtgcctgctccatctccggct 286
|| ||||| ||| || | |||||| | | |||||||| ||| | | | ||||||| ||
Sbjct 61 ATACTCCC--TCC-TC-C-TGCTCCGG-TGCCTGCTCC--TGC-T-C-C-ATCTCCGTCT 108
Query 287 tccAGTTATGGCC--C-T---CAG-T-----ATAGTCAAGAGGGTTATGCATCACAGCCT 334
||||||||||||| | | ||| | ||||||||||||| |||||||||||||||
Sbjct 109 TCCAGTTATGGCCATCATTATCAGATGCCGCATAGTCAAGAGGGCTATGCATCACAGCCT 168
Query 335 AATAATCCTCCACC 348
||| ||||||||||
Sbjct 169 AATTATCCTCCACC 182
> Ahg488284 jgi|Araly1|488284|fgenesh2_kg.6__1418__AT5G14420.2
Length=1821
Score = 832 bits (450), Expect = 0.0
Identities = 733/868 (84%), Gaps = 26/868 (3%)
Strand=Plus/Plus
Query 496 GTATTCCAAAATATCGGATAACTACTCTTCTTTACTGCAGGTGTCCGAGGCTCTAGGC-C 554
|||||| ||||| || ||| | ||||||||||| ||||||| | |||||||| || |
Sbjct 502 GTATTCGAAAATTTCTGATGATTACTCTTCTTTGGAGCAGGTGACGGAGGCTCT-TGCAC 560
Query 555 GTGCAGGTCTTGAATCTTCTAATCTAATCGTTGGTATTGATTTCACCAAGAGCAATGAAT 614
| |||||||| ||||| || ||||| |||||||||||||||||||| ||||| || ||||
Sbjct 561 GGGCAGGTCTAGAATCATCAAATCTCATCGTTGGTATTGATTTCACTAAGAGTAACGAAT 620
Query 615 GGACAGGGGCCAAGTCCTTCAATAGGAAAAGCTTGCA--TCACTTGAGCAATA-CCCCGA 671
|||||||||||| ||||||||||||||||||||| || ||| | | ||| || ||| |
Sbjct 621 GGACAGGGGCCAGGTCCTTCAATAGGAAAAGCTTACATTTCA-TAG-GCAGTAGTCCC-A 677
Query 672 ATCCATACGAGCAAGCAATTACTATCATTGGAAGAACCTTAGCCGCCTTTGACGAGGATA 731
|||| ||||| ||||| || |||||||| ||||||||||||||||||||||||||||| |
Sbjct 678 ATCCTTACGAACAAGCGATAACTATCATAGGAAGAACCTTAGCCGCCTTTGACGAGGACA 737
Query 732 ACTTAATTCCTTGTTATGGTTTTGGAGACGCATCAACTCATGATCAAGACGTGTTTAGTT 791
|||| ||||| ||||||||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 738 ACTTGATTCCATGTTATGGTTTTGGAGATGCATCAACACATGACCAAGACGTGTTCAGTT 797
Query 792 TCTATCCAGAGGGA-AGATTCTGTAATGGATTTGAGGAAGTA-TTGGCTCGTTATAGAGA 849
|| || | |||| | ||||||||||||||||||||||||||| ||| |||| |||| |||
Sbjct 798 TCAATTCGGAGG-ATAGATTCTGTAATGGATTTGAGGAAGTACTTG-CTCGGTATAAAGA 855
Query 850 AATTGTACCTCAGCTTAAGCTCGCAGGACCAACTTCTTTTGCCCCGATCATTGAAATGGC 909
|| || ||||| |||||||||||||| ||||| || ||||| |||||||| || |||||
Sbjct 856 GATCGTGCCTCAACTTAAGCTCGCAGGGCCAACCTCGTTTGCTCCGATCATCGATATGGC 915
Query 910 AATGAC-AGTGGTTGAGCAGAGTAGTGGCCAATATCATGTGTTAGTGATTATAGCTGATG 968
||||| | || ||||||||||| |||| |||||||| || ||||||| ||||| ||||
Sbjct 916 CATGACCATTG-TTGAGCAGAGTGGTGGGCAATATCACGTCCTAGTGATAATAGCAGATG 974
Query 969 GCCAGGTCACAAGAAGTGTCGATACCGAACACGGGCGGCTAAGTCCGCAAGAACAGAAGA 1028
| ||||| ||||||||||| || || ||| | || | | |||||||||| ||||||||||
Sbjct 975 GACAGGTTACAAGAAGTGTTGACACGGAAAATGGACAGTTAAGTCCGCAGGAACAGAAGA 1034
Query 1029 CAGTAGATGCAATTGTGAAAGCAAGTACCCTTCCTTTGTCAATAGTCTTAGTTGGGGTCG 1088
|||||||||| || ||| |||| |||| |||||| | ||||| |||||||| ||||| |
Sbjct 1035 CAGTAGATGCGATCGTGCAAGCGAGTAAGCTTCCTCTATCAATCGTCTTAGTCGGGGTGG 1094
Query 1089 GGGATGGACCATGGGACATGATGCAGG-AATTTGATGATAACATACCTGCCCGAGC-TTT 1146
|||||||||| |||||||||||| ||| ||||||| ||||| || || |||||||| |||
Sbjct 1095 GGGATGGACCTTGGGACATGATG-AGGGAATTTGACGATAATATCCCGGCCCGAGCATTT 1153
Query 1147 CGATAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAAGAACAAAGAC-CAGTC-T 1204
||||||||||| || ||||||||||||||||||||| |||||||||||| | || || |
Sbjct 1154 -GATAACTTCCAATTCGTGAACTTCACAGAGATCATGGCAAAGAACAAAG-CTCAATCCT 1211
Query 1205 CGGAAGGAGACAGAGTTTGCGCTGTCTGCTCTCATGGAGATCCCTCCACAGTACAAAGCA 1264
| ||||| ||||||||||| || ||||||||||||||||| |||| ||||||||| ||
Sbjct 1212 TG-AAGGAAACAGAGTTTGCCCTTTCTGCTCTCATGGAGATTCCTCAACAGTACAAGGCG 1270
Query 1265 ACGATAGAGCTTAACCTTTTAGGG-GTAAGAAATGGAAATATCCCACAGAGAATCCCACT 1323
|| |||||||||||||||||||| | ||||||||| |||||||| ||||| |||| ||
Sbjct 1271 ACAATAGAGCTTAACCTTTTAGGAAG-AAGAAATGGGAATATCCCGGAGAGATTCCCTCT 1329
Query 1324 TCCGCCACCGGTGCA-GAGTGGATCATC 1350
|||||| || |||| | ||||||||||
Sbjct 1330 TCCGCCTCCAATGCACG-GTGGATCATC 1356
> Ahg332615 jgi|Araly1|332615|fgenesh1_pm.C_scaffold_8001958
Length=1155
Score = 167 bits (90), Expect = 3e-40
Identities = 524/723 (72%), Gaps = 72/723 (10%)
Strand=Plus/Plus
Query 563 CTTGAATCTTCTAATCT-AATCGTTGGTATTGA-TTTCACCAAGAGCAATGAATGGACAG 620
||||||||||| ||||| | || | || ||||| ||| |||||||||||||| ||||||
Sbjct 97 CTTGAATCTTCAAATCTGATTC-TAGGAATTGACTTT-ACCAAGAGCAATGAGTGGACA- 153
Query 621 GGGCCA-AGTCCTTCAATAGGAAAAG-CTTGCAT--CACTTGAGCAATACCCCGAATCCA 676
||| | | || ||||| || ||||| ||| ||| || ||| | || | | |||||||
Sbjct 154 GGGAGATATTCATTCAACAGAAAAAGCCTT-CATGCCA-TTG-GTAAAAGACAGAATCCA 210
Query 677 TACGAGCAAGCAATTA-CTATCATTGGAAGAACCTTAG-C-CGCCTTTGACGAGGAT-AA 732
|| |||||||||| || | || ||||| | | ||| | | | ||||||| || ||| |
Sbjct 211 TATGAGCAAGCAA-TATCGATAATTGGTCGTA-CTTTGTCTC-CCTTTGATGAAGATGAT 267
Query 733 CTTAATTCCTTGTTAT-GGTTTTGGAGACGCATCAACTC-ATGATCAAGACGTGTTT-AG 789
||| || ||||||| | |||||||| || | | |||| | | |||||| | || ||| ||
Sbjct 268 CTT-ATACCTTGTT-TCGGTTTTGGCGATGTAACAACACGA-GATCAATATGT-TTTCAG 323
Query 790 -TTTCTATCCAGAGGGA-AGATTCTGTAATGGATTTGAGGAA-GTA-TTGGCTCGTTATA 845
||| ||||| || | | | | ||| | ||||| || || | | || | ||||
Sbjct 324 CTTT-TATCCCGA-GAACAAAAGCTGCGACGGATTGGA-AAACGCAGTT-AAAAGATATA 379
Query 846 GAGAAATTGTACCTCAGCTT-AAGCTCG-CAGGACCAACTTCTTTTGCCCCGATCATTGA 903
|||| ||||| || || || ||| | | | || || || || || || ||| | |||||
Sbjct 380 GAGAGATTGTCCCACA-TTTGAAG-TTGTCCGGTCCTACCTCGTTCGCACCGGTTATTGA 437
Query 904 -AATGGCAATGACAGTGGTTGAGCAGAGTAGT-GGCCAATATCATGTGT-TAGTGATTAT 960
|| || | ||| | |||||||||| | | | ||||| ||||| | | || |||||
Sbjct 438 TGCTGCCATTAACA-TAGTTGAGCAGAACAATATG-CAATACCATGT-TCTCGTCATTAT 494
Query 961 AGCTGATGGCCAGGTCACAAGAAGTGTC-GA--TACCGAACACGGGCGGCTAAGTCCGCA 1017
|| ||||| ||||||||||||| | | || | ||| | || || || ||||| |
Sbjct 495 TGCAGATGGTCAGGTCACAAGAAAT-CCAGATGTGCCG--CTTGGTCGACTTAGTCCAC- 550
Query 1018 AGAACAGAAGACAGTA-GATGCAA-TTG-TGAA-AGCAAG-TA-CCCTT--CCTTTGTCA 1069
|| | ||||| | || ||| || | | | || || || || || || || |||||
Sbjct 551 AGGA-AGAAG-C--TACTATG-AACTCGAT-AATGGC-AGCTAGCCATTACCCATTGTCG 603
Query 1070 ATAGTCTTAGTTGGGGTCGGGGATGGACCATGGGACATGATGCAGGAATTTGATGATAAC 1129
|||||||| ||||| || || |||||||||||||||| ||| | |||| ||||| ||
Sbjct 604 ATAGTCTTGGTTGGAGTAGGAGATGGACCATGGGACACAATGAAACAATTCGATGACAAT 663
Query 1130 ATACCTGC-CCGAGCTTTCGATAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAA 1188
|| ||| | ||| | |||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 664 ATTCCT-CACCGTGAATTCGATAACTTCCAGTTTGTGAACTTCACAAAGATAATGTCAGA 722
Query 1189 GAACAAAGAC-CAGTCTCGGAAGGAGACAGAGTTTGCGCT-GTCTGCTCTCATGGAGATC 1246
| | ||||| | | || |||||| | | |||||||| | | |||||||||||||||
Sbjct 723 GCATAAAGATGCGG-CTAAAAAGGAGGCTGCTTTTGCGCTCG-CAGCTCTCATGGAGATC 780
Query 1247 CCT 1249
|||
Sbjct 781 CCT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67000740955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5