BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01660.1
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340279 jgi|Araly1|340279|fgenesh1_pg.C_scaffold_3000042 1288 0.0
Ahg947437 jgi|Araly1|947437|scaffold_703666.1 292 2e-78
Ahg951891 jgi|Araly1|951891|scaffold_23400002.1 267 1e-70
Ahg951892 jgi|Araly1|951892|scaffold_23400003.1 261 7e-69
> Ahg340279 jgi|Araly1|340279|fgenesh1_pg.C_scaffold_3000042
Length=825
Score = 1288 bits (697), Expect = 0.0
Identities = 785/827 (95%), Gaps = 7/827 (1%)
Strand=Plus/Plus
Query 55 ATGGATTCTCTTCGATTCAACCTCCAACAATCTCCATTTCAATTGAAACCTAGAATTCTC 114
||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||||||
Sbjct 1 ATGGATTCTCTTCGATTCAACCTCCAACAATATCCAATCCAATTGAAACCCAGAATTCTC 60
Query 115 CGACCAAGAATCAC---CAACATATC-AAACCGAATCGATGAAACCGATCCTCGACCATC 170
|||||||||||||| ||||||||| ||| | || ||||||||||||||||||||||||
Sbjct 61 CGACCAAGAATCACTAACAACATATCGAAA-CAAACCGATGAAACCGATCCTCGACCATC 119
Query 171 ATCCTCGGCCGGT-AGGATCCAAAGGTTAGTACTTAACAACGAAGGTCGGACCAAACTAA 229
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATCCTCGGCCGGTAAGG-TCCAAAGGTTAGTACTTAACAACGAAGGTCGGACCAAACTAA 178
Query 230 ACGCCGATCCTGACCGTGAATTCTATTCATATCCACGGTTCGTGAACCACGTAGATGATA 289
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 179 ACGCCGATCCTGACCGTGAGTTCTATTCATACCCACGGTTCGTGAACCACGTAGACGATG 238
Query 290 GTTTCATATCCTCCTTAACCGAACTATACAGAAACCGGTTGAGACCCGGTTCGACTGTAC 349
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 239 GTTTCATATCCTCCTTAACCGAACTATACAGAAACCGGTTGAGACCCGGTTCGATTGTAC 298
Query 350 TTGACTTGATGAGCTCATGGGTCAGCCATCTTCCAGAAGAAGTGAAGTACGAGAAAGTAG 409
| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 299 TAGACTTGATGAGCTCATGGGTTAGCCATCTTCCAGAAGAAGTCAAGTACGAGAAAGTGG 358
Query 410 TAGGGCATGGTCTTAACGCACAGGAGCTTGCTCGTAACCCTAGACTCGATTACTTCTTCG 469
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 359 TGGGGCATGGTCTTAACGCACAAGAGCTTGCACGTAACCCTAGACTCGATTACTTCTTCG 418
Query 470 TCAAGGATCTTAATGAAGATCAGAAGTTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT 529
|||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 419 TCAAGGATCTCAACGAAGATGAGAAATTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT 478
Query 530 TGTGTTCTGTTGGTGTACAGTATCTACAACAACCCGAAAAGGTGTTTGCAGAAGTGTATA 589
| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 TATGTGCTGTCGGTGTACAGTATCTACAACAACCCGAAAAGGTGTTTGCACAAGTGTATA 538
Query 590 GAGTGTTGAAACCGGGAGGAGTGTTGATAGTGAGTTTTAGCAACCGGATGTTTTATGAGA 649
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 539 GAGTGTTGAAACCGGGAGGTGTGTTGATAGTGAGTTTTAGCAATCGGATGTTTTATGAGA 598
Query 650 AAGCAATTAGGGTTTGGCGTGATGGAACCGAATACAGTCGGATCCAATTGGTGGTTCAGT 709
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGCAATTAGGGTTTGGCGAGATGGAACCGAATACAGTCGGATCCAATTGGTGGTTCAGT 658
Query 710 ACTTTCAGTCTATTGAAGGGTTTACTCAGCCGGAGATCATCCGGCAACAGCCTGGAGCTC 769
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 659 ACTTTCAGTCTATTGAAGGGTTTACTCAGCCGGAGATCTTCCGGCAACAGCCTGGAGCTC 718
Query 770 AGATATCGGTTTTGACTCGGCTTATGGGTTTTATCGGTTTAGCTTCTACGCCCGATCCTT 829
||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 719 AGATATCGGTTATGACTCGGCTTATGGGTTTTATTGGTTTAGCTTCTAGGCCCGATCCTT 778
Query 830 TTAATGCTGTCATTGCTTATAAAAATTTCAAACCTATTTATGAGTAA 876
|||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 779 TTAATGCTGTCATTGCTTATAAGAATTTCAAACCTCTTTATGAGTAA 825
> Ahg947437 jgi|Araly1|947437|scaffold_703666.1
Length=352
Score = 292 bits (158), Expect = 2e-78
Identities = 192/208 (92%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 365 CATGGGTCAGCCATCTTCCAGAAGAAGTGAAGTACGAGAAAGTAGTAGGGCATGGTCTTA 424
||||||| |||||||||| ||||||||| |||||||||||||| || |||||||||||||
Sbjct 52 CATGGGTTAGCCATCTTCAAGAAGAAGTCAAGTACGAGAAAGTGGTGGGGCATGGTCTTA 111
Query 425 ACGCACAGGAGCTTGCTCGTAACCCTAGACTCGATTACTTCTTCGTCAAGGATCTTAATG 484
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 112 ACGCACAAGAGCTTGCACGTAACCCTAGACTCGATTACTTCTTCGTCAAGGATCTCAACG 171
Query 485 AAGATCAGAAGTTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT-TGTGTTCTGTTGGT 543
|||||||||| ||||||||||||||||||| |||||||||||||| |||| |||| |||
Sbjct 172 AAGATCAGAAATTCGAGTTCGAAGACAAGTCTTTCGACGCTGTTTATGTG--CTGTCGGT 229
Query 544 GTACAGTATCTACAACAACCCGA-AAAG 570
||||||||||||||||||||||| ||||
Sbjct 230 GTACAGTATCTACAACAACCCGATAAAG 257
> Ahg951891 jgi|Araly1|951891|scaffold_23400002.1
Length=352
Score = 267 bits (144), Expect = 1e-70
Identities = 171/184 (93%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 388 GAAGTGAAGTACGAGAAAGTAGTAGGGCATGGTCTTAACGCACAGGAGCTTGCTCGTAAC 447
||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||||
Sbjct 87 GAAGTCAAGTACGAGAAAGTGGTGGGGCATGGTCTTAACGCACAAGAGCTTGCACGTAAC 146
Query 448 CCTAGACTCGATTACTTCTTCGTCAAGGATCTTAATGAAGATCAGAAGTTCGAGTTCGAA 507
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 147 CCTAGACTCGATTACTTCTTCGTCAAGGATCTCAACGAAGATCAGAAATTCGAGTTCGAA 206
Query 508 GACAAGTATTTCGACGCTGTTTTGTGTTCTGTTGGTGTACAGTATCTACAACAACCCGA- 566
||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 207 GACAAGTCTTTCGACGCTGTTTTATGTGCTGTCGGTGTACAGTATCTACAACAACCCGAT 266
Query 567 AAAG 570
||||
Sbjct 267 AAAG 270
> Ahg951892 jgi|Araly1|951892|scaffold_23400003.1
Length=352
Score = 261 bits (141), Expect = 7e-69
Identities = 170/184 (92%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 388 GAAGTGAAGTACGAGAAAGTAGTAGGGCATGGTCTTAACGCACAGGAGCTTGCTCGTAAC 447
||||| |||||||||||||| || |||||||||||||||||||| |||||||| ||||||
Sbjct 87 GAAGTCAAGTACGAGAAAGTGGTGGGGCATGGTCTTAACGCACAAGAGCTTGCACGTAAC 146
Query 448 CCTAGACTCGATTACTTCTTCGTCAAGGATCTTAATGAAGATCAGAAGTTCGAGTTCGAA 507
|||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 147 CCTAGACTCGATTACTTCTTCGTCAAGGATCTCAACGAAGATCAGAAATTTGAGTTCGAA 206
Query 508 GACAAGTATTTCGACGCTGTTTTGTGTTCTGTTGGTGTACAGTATCTACAACAACCCGA- 566
||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct 207 GACAAGTCTTTCGACGCTGTTTTATGTGCTGTCGGTGTACAGTATCTACAACAACCCGAT 266
Query 567 AAAG 570
||||
Sbjct 267 AAAG 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35339944059
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5