BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01660.1 Length=952 Score E Sequences producing significant alignments: (Bits) Value Ahg340279 jgi|Araly1|340279|fgenesh1_pg.C_scaffold_3000042 1288 0.0 Ahg947437 jgi|Araly1|947437|scaffold_703666.1 292 2e-78 Ahg951891 jgi|Araly1|951891|scaffold_23400002.1 267 1e-70 Ahg951892 jgi|Araly1|951892|scaffold_23400003.1 261 7e-69 > Ahg340279 jgi|Araly1|340279|fgenesh1_pg.C_scaffold_3000042 Length=825 Score = 1288 bits (697), Expect = 0.0 Identities = 785/827 (95%), Gaps = 7/827 (1%) Strand=Plus/Plus Query 55 ATGGATTCTCTTCGATTCAACCTCCAACAATCTCCATTTCAATTGAAACCTAGAATTCTC 114 ||||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||| Sbjct 1 ATGGATTCTCTTCGATTCAACCTCCAACAATATCCAATCCAATTGAAACCCAGAATTCTC 60 Query 115 CGACCAAGAATCAC---CAACATATC-AAACCGAATCGATGAAACCGATCCTCGACCATC 170 |||||||||||||| ||||||||| ||| | || |||||||||||||||||||||||| Sbjct 61 CGACCAAGAATCACTAACAACATATCGAAA-CAAACCGATGAAACCGATCCTCGACCATC 119 Query 171 ATCCTCGGCCGGT-AGGATCCAAAGGTTAGTACTTAACAACGAAGGTCGGACCAAACTAA 229 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ATCCTCGGCCGGTAAGG-TCCAAAGGTTAGTACTTAACAACGAAGGTCGGACCAAACTAA 178 Query 230 ACGCCGATCCTGACCGTGAATTCTATTCATATCCACGGTTCGTGAACCACGTAGATGATA 289 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| Sbjct 179 ACGCCGATCCTGACCGTGAGTTCTATTCATACCCACGGTTCGTGAACCACGTAGACGATG 238 Query 290 GTTTCATATCCTCCTTAACCGAACTATACAGAAACCGGTTGAGACCCGGTTCGACTGTAC 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 239 GTTTCATATCCTCCTTAACCGAACTATACAGAAACCGGTTGAGACCCGGTTCGATTGTAC 298 Query 350 TTGACTTGATGAGCTCATGGGTCAGCCATCTTCCAGAAGAAGTGAAGTACGAGAAAGTAG 409 | |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| | Sbjct 299 TAGACTTGATGAGCTCATGGGTTAGCCATCTTCCAGAAGAAGTCAAGTACGAGAAAGTGG 358 Query 410 TAGGGCATGGTCTTAACGCACAGGAGCTTGCTCGTAACCCTAGACTCGATTACTTCTTCG 469 | |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 359 TGGGGCATGGTCTTAACGCACAAGAGCTTGCACGTAACCCTAGACTCGATTACTTCTTCG 418 Query 470 TCAAGGATCTTAATGAAGATCAGAAGTTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT 529 |||||||||| || |||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 419 TCAAGGATCTCAACGAAGATGAGAAATTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT 478 Query 530 TGTGTTCTGTTGGTGTACAGTATCTACAACAACCCGAAAAGGTGTTTGCAGAAGTGTATA 589 | ||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 479 TATGTGCTGTCGGTGTACAGTATCTACAACAACCCGAAAAGGTGTTTGCACAAGTGTATA 538 Query 590 GAGTGTTGAAACCGGGAGGAGTGTTGATAGTGAGTTTTAGCAACCGGATGTTTTATGAGA 649 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 539 GAGTGTTGAAACCGGGAGGTGTGTTGATAGTGAGTTTTAGCAATCGGATGTTTTATGAGA 598 Query 650 AAGCAATTAGGGTTTGGCGTGATGGAACCGAATACAGTCGGATCCAATTGGTGGTTCAGT 709 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 599 AAGCAATTAGGGTTTGGCGAGATGGAACCGAATACAGTCGGATCCAATTGGTGGTTCAGT 658 Query 710 ACTTTCAGTCTATTGAAGGGTTTACTCAGCCGGAGATCATCCGGCAACAGCCTGGAGCTC 769 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 659 ACTTTCAGTCTATTGAAGGGTTTACTCAGCCGGAGATCTTCCGGCAACAGCCTGGAGCTC 718 Query 770 AGATATCGGTTTTGACTCGGCTTATGGGTTTTATCGGTTTAGCTTCTACGCCCGATCCTT 829 ||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 719 AGATATCGGTTATGACTCGGCTTATGGGTTTTATTGGTTTAGCTTCTAGGCCCGATCCTT 778 Query 830 TTAATGCTGTCATTGCTTATAAAAATTTCAAACCTATTTATGAGTAA 876 |||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 779 TTAATGCTGTCATTGCTTATAAGAATTTCAAACCTCTTTATGAGTAA 825 > Ahg947437 jgi|Araly1|947437|scaffold_703666.1 Length=352 Score = 292 bits (158), Expect = 2e-78 Identities = 192/208 (92%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 365 CATGGGTCAGCCATCTTCCAGAAGAAGTGAAGTACGAGAAAGTAGTAGGGCATGGTCTTA 424 ||||||| |||||||||| ||||||||| |||||||||||||| || ||||||||||||| Sbjct 52 CATGGGTTAGCCATCTTCAAGAAGAAGTCAAGTACGAGAAAGTGGTGGGGCATGGTCTTA 111 Query 425 ACGCACAGGAGCTTGCTCGTAACCCTAGACTCGATTACTTCTTCGTCAAGGATCTTAATG 484 ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 112 ACGCACAAGAGCTTGCACGTAACCCTAGACTCGATTACTTCTTCGTCAAGGATCTCAACG 171 Query 485 AAGATCAGAAGTTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT-TGTGTTCTGTTGGT 543 |||||||||| ||||||||||||||||||| |||||||||||||| |||| |||| ||| Sbjct 172 AAGATCAGAAATTCGAGTTCGAAGACAAGTCTTTCGACGCTGTTTATGTG--CTGTCGGT 229 Query 544 GTACAGTATCTACAACAACCCGA-AAAG 570 ||||||||||||||||||||||| |||| Sbjct 230 GTACAGTATCTACAACAACCCGATAAAG 257 > Ahg951891 jgi|Araly1|951891|scaffold_23400002.1 Length=352 Score = 267 bits (144), Expect = 1e-70 Identities = 171/184 (93%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 388 GAAGTGAAGTACGAGAAAGTAGTAGGGCATGGTCTTAACGCACAGGAGCTTGCTCGTAAC 447 ||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||| Sbjct 87 GAAGTCAAGTACGAGAAAGTGGTGGGGCATGGTCTTAACGCACAAGAGCTTGCACGTAAC 146 Query 448 CCTAGACTCGATTACTTCTTCGTCAAGGATCTTAATGAAGATCAGAAGTTCGAGTTCGAA 507 |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| Sbjct 147 CCTAGACTCGATTACTTCTTCGTCAAGGATCTCAACGAAGATCAGAAATTCGAGTTCGAA 206 Query 508 GACAAGTATTTCGACGCTGTTTTGTGTTCTGTTGGTGTACAGTATCTACAACAACCCGA- 566 ||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||| Sbjct 207 GACAAGTCTTTCGACGCTGTTTTATGTGCTGTCGGTGTACAGTATCTACAACAACCCGAT 266 Query 567 AAAG 570 |||| Sbjct 267 AAAG 270 > Ahg951892 jgi|Araly1|951892|scaffold_23400003.1 Length=352 Score = 261 bits (141), Expect = 7e-69 Identities = 170/184 (92%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 388 GAAGTGAAGTACGAGAAAGTAGTAGGGCATGGTCTTAACGCACAGGAGCTTGCTCGTAAC 447 ||||| |||||||||||||| || |||||||||||||||||||| |||||||| |||||| Sbjct 87 GAAGTCAAGTACGAGAAAGTGGTGGGGCATGGTCTTAACGCACAAGAGCTTGCACGTAAC 146 Query 448 CCTAGACTCGATTACTTCTTCGTCAAGGATCTTAATGAAGATCAGAAGTTCGAGTTCGAA 507 |||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 147 CCTAGACTCGATTACTTCTTCGTCAAGGATCTCAACGAAGATCAGAAATTTGAGTTCGAA 206 Query 508 GACAAGTATTTCGACGCTGTTTTGTGTTCTGTTGGTGTACAGTATCTACAACAACCCGA- 566 ||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||| Sbjct 207 GACAAGTCTTTCGACGCTGTTTTATGTGCTGTCGGTGTACAGTATCTACAACAACCCGAT 266 Query 567 AAAG 570 |||| Sbjct 267 AAAG 270 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35339944059 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5