BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01690.1
Length=1470
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477346 jgi|Araly1|477346|fgenesh2_kg.3__47__AT3G01690.1 1746 0.0
> Ahg477346 jgi|Araly1|477346|fgenesh2_kg.3__47__AT3G01690.1
Length=1309
Score = 1746 bits (945), Expect = 0.0
Identities = 1170/1266 (92%), Gaps = 65/1266 (5%)
Strand=Plus/Plus
Query 29 CAATTAAGATTAATGTAGTAATCTAGTAATCG-TTAAAA-AAGCCACTTTGTTAGTATTG 86
|||| |||||||||||||||| ||||| || | ||||| ||||||| || || | |
Sbjct 1 CAATAAAGATTAATGTAGTAAACTAGT-AT-GAGTAAAAGAAGCCAC-TT-TT-G---T- 51
Query 87 CTTAATActctctctctctctctGTTCCCAAGGAGATGAAAAGCTTCAATCTCAAAACAT 146
||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| |
Sbjct 52 CTTAATACTCTCTCTCTCTCTCTGTTCCCAA-G-GA-GAAAAGCTTCAATCTCAAAACTT 108
Query 147 AGCAGCTCTCTCA--A-TAAACCAAACCCAAATGCAAGCTGTGTAGAGAGAAACGGAGTG 203
||||||||||||| | ||||||||| ||||||||||||||||||||||| |||
Sbjct 109 AGCAGCTCTCTCATCAGTAAACCAAA-CCAAATGCAAGCTGTGTAGAGAGCAAC------ 161
Query 204 AGGAAGGAAGGAGATGGGAGGGGTGACGTCATCGGTGGCGGCGAAGTTTGCCTTCTTCCC 263
|| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 162 -GG-A-GAAGGAGATGGGAGGGGTGACGTCATCGGTGGCGGCTAAGTTCGCCTTCTTCCC 218
Query 264 GCCGAGTCCACCGTCTTACAAGGTGGTGACCGACGAGCTCACCGGACTGTTGCTTCTCAG 323
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GCCGAGTCCGCCGTCTTACAAGGTGGTGACCGACGAGCTCACCGGACTGTTGCTTCTCAG 278
Query 324 CCCTTTCCCCCACCGCGAAAACGTAGAAATCGTAAAGCTTCGGACCAGGAGAGGCACAGA 383
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 279 CCCTTTCCCCCACCGCGAAAACGTAGAAATCGTAAAGCTTCCGACGAGGAGAGGCACTGA 338
Query 384 GATCGTGGGCATGTACGTGAGGCATCCGATGGCTACCTCCACGCTCCTCTACTCCCATGG 443
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 339 GATCGTGGGCATGTACGTGAGGCATCCCATGGCTACCTCCACGCTCCTCTACTCCCATGG 398
Query 444 CAACGCCGCCGATCTGGGACAGATGTATGAGCTCTTCATTGAGCTTAGCATCCATCTCAA 503
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 399 CAACGCCGCCGATCTGGGACAGATGTATGAGCTCTTCATCGAGCTTAGCATCCATCTCAA 458
Query 504 GGTTAATCTTATGGGATACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCGAGTGA 563
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 459 GGTTAATCTTATGGGATACGATTACTCCGGGTATGGACAATCTACTGGAAAGCCTAGTGA 518
Query 564 GCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTTGAAGAAACCTTTGGCTC 623
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 519 GCATAACACGTATGCTGATATCGAAGCTGTTTATAAGTGTCTTGAAGAAACATTTGGCTC 578
Query 624 TAAGCAGGAAGGTGTCATCCTCTACGGCCAATCTGTAGGCAGCGGACCTACGTTAGATCT 683
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 579 TAAGCAGGAAGATGTCATTCTCTACGGCCAATCTGTAGGCAGCGGACCTACGTTAGATCT 638
Query 684 TGCTTCCCGGTTGCCTCAACTTAGAGCCGTCGTCCTTCACAGCCCCATTCTCTCCGGTTT 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 639 TGCTTCCCGGTTGCCTCAACTTAGAGCCGTCGTCCTTCACAGCCCCATTCTCTCTGGTTT 698
Query 744 AAGAGTTATGTATTCCGTCAAGAAAACCTACTGGTTCGACATCTACAAGAATATCGACAA 803
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 AAGAGTTATGTATGCCGTCAAGAAAACCTACTGGTTCGACATCTACAAGAATATCGACAA 758
Query 804 AATCCCATATGTCGATTGCCCGGTTCTCATCATTCATGGAACTTCGGATGAGGTAGTGGA 863
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 759 AATCCCGCATGTCGATTGCCCGGTTCTCATCATTCATGGAACTTCGGATGAAGTAGTGGA 818
Query 864 TTGTTCTCATGGGAAACAACTATGGGAACTCTGCAAAGACAAGTACGAGCCGCTCTGGGT 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 TTGTTCTCATGGGAAACAACTATGGGAACTCTGCAAAGACAAGTACGAGCCGCTCTGGGT 878
Query 924 GAAAGGAGGGAACCACTGTGATCTTGAACACTACCCTGAATACATTAGACACCTCAAGAA 983
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 879 GAAAGGAGGGAACCACTGTGATCTTGAACACTACCCTGAATACATCAGACACCTTAAGAA 938
Query 984 GTTCAT-AGCAACAGTAGAGAGATTACCATGTCCGAGGATGAGCAGCGACCAATCAGAGA 1042
||||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 939 ATTCATCA-CGACAGTAGAGAGATTACCTTGTCCGAGGATGAGCAGCGACCAATCAGAGA 997
Query 1043 GAGTGAGAGATGCGCCCCCGAGGAGAAGTATGGACAGGAGAGTGAAGCCGAGGCAGAGCA 1102
| | | | | || ||||||||||||||||||||||||||||||||
Sbjct 998 G-G--A-A-A----------AG------TATGGACAGGAGAGTGAAGCCGAGGCAGAGCA 1036
Query 1103 CAGAGCGTAGAGAGA-A-AGAGA-AG---CCACCAAAGAGTCAGTCGAAGATGAGTAGCA 1156
||||||||||||||| | ||||| || |||||||||||||||||||||| ||||||||
Sbjct 1037 CAGAGCGTAGAGAGAGAGAGAGAGAGAAGCCACCAAAGAGTCAGTCGAAGAAGAGTAGCA 1096
Query 1157 GCAGCAGCAAGCTCAAGATCTCGTTT-GATCAACTTGATCGCTCGCGGAGGAGCGTTGAC 1215
||| ||| |||||||||| ||| ||||| |||||||||||||||||||| ||||||
Sbjct 1097 GCA--AGC----TCAAGATCTC-TTTCGATCATCTTGATCGCTCGCGGAGGAGTGTTGAC 1149
Query 1216 TGCCATGAAAAGACTCGGAAGAGCGTTGACCAGATTGAGAGGGGGAGGAAGAGTGTGGAT 1275
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 TGCCATGAAAAGAGTCGGAAGAGCGTTGACCAGATTGAGAGGGGGAGGAAGAGTGTGGAT 1209
Query 1276 AG-GTT 1280
|| |||
Sbjct 1210 AGAGTT 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55002313780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5