BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G01700.1 Length=753 Score E Sequences producing significant alignments: (Bits) Value Ahg477345 jgi|Araly1|477345|fgenesh2_kg.3__46__AT3G01700.1 743 0.0 > Ahg477345 jgi|Araly1|477345|fgenesh2_kg.3__46__AT3G01700.1 Length=678 Score = 743 bits (402), Expect = 0.0 Identities = 549/615 (89%), Gaps = 29/615 (5%) Strand=Plus/Plus Query 1 ATCTGAAGCTTCTGCAGTATTCA-AAC-AAATAAAATATACTGCTTTAGCTTTGG----- 53 ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| Sbjct 1 ATCTGAAGCTTCTGCAGTATTCAGAACAAAATAAATTATACTGCTTTAGCTTTGGAACAA 60 Query 54 --ACACCTCCTCTTACTAATCTCTATAACTATA--TTT--AA--AAAGTAGAAAATAATG 105 |||||||||||| |||||||||||| |||| ||| || ||| | |||| |||| Sbjct 61 CAACACCTCCTCTTTTTAATCTCTATAATTATATTTTTAAAATTAAAAAAAAAAAAAATG 120 Query 106 GCACGTCTATTTGTCGTAGTTGCCCTTTTGGCTTTGGCCGTGGGCACCGTATTCGCCGCC 165 ||||||| | |||||||| ||||||| |||||||||||||||| ||||| |||||||||| Sbjct 121 GCACGTCAAATTGTCGTATTTGCCCTCTTGGCTTTGGCCGTGGCCACCGCATTCGCCGCC 180 Query 166 GATGCACCTTCAGCTGCACCCACCGCCTCACCAACCAAA-TCCCCA--ACCAAGGCTCCT 222 ||||||||||||||||||||||||||||| || |||||| ||||| |||||||||||| Sbjct 181 GATGCACCTTCAGCTGCACCCACCGCCTCTCCGACCAAAGCCCCCACCACCAAGGCTCCT 240 Query 223 GCCGCTGCACCCAAATCCTCCGCCGCCGCACCGAAAGCATCATCCCCTGTTGCTGAGGAA 282 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 241 GCAGCTGCACCCAAATCCTCCGCCGCCGCACCGAAAGCATCATCCCCTGTTGCAGAGGAA 300 Query 283 CCCACC-CCTGAAGACGACTACTCTGCAGCCAGCCCCAGTGACTCCGCCGAGGCACCCAC 341 |||||| || ||||||||||| || ||||||| ||||||||||||||||||||||||||| Sbjct 301 CCCACCTCC-GAAGACGACTATTCGGCAGCCACCCCCAGTGACTCCGCCGAGGCACCCAC 359 Query 342 CGTCTCCTCCCCACCCGCTCCTACCCCCGAAGCCGATGGTCCCTCCTCCGACGGACCCTC 401 ||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| Sbjct 360 CGTCTCCTCCCCACCGGCTCCTACCCCCGAAGCCGATGGTCCCTCAACCGATGGACCCTC 419 Query 402 ATCTGATGGACCCGCCGCCGCCGAGTCACCCAAAAGTGGCGCCACGACTAATGTGAAGCT 461 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 ATCTGATGGACCCACCGCCGCCGAGTCACCCAAAAGTGGCGCCACGACTAATGTGAAGCT 479 Query 462 CTCCATCGCCGGCACTGTCGCCGCCGCCGGATTCTTCATCTTCTCTCTCTAAGTTTTGTT 521 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 480 CTCCATCGCCGGCACTGTCGCCGCCGCCGGATTCTTCATCTTCTCTCTCTAAGTTTT-TT 538 Query 522 TTTTAATTAAACTTGAGACGGAATCATAAGAT-TCACATTATGAG-ATGAGGCCGTATCT 579 || | ||||||||| |||||||||||| || | ||| | ||||| | | |||| Sbjct 539 TT--A-TTAAACTTGGGACGGAATCATATTATCTGTG-TTAACATTATGAGAC-G-ATCT 592 Query 580 CTTTAACTAACTAAC 594 ||||||||||||||| Sbjct 593 CTTTAACTAACTAAC 607 Score = 69.4 bits (37), Expect = 3e-11 Identities = 40/41 (98%), Gaps = 1/41 (2%) Strand=Plus/Plus Query 619 TAATCAAGAGATTGAATGGAGTTATTATTATTACGTACCGT 659 ||| ||||||||||||||||||||||||||||||||||||| Sbjct 604 TAA-CAAGAGATTGAATGGAGTTATTATTATTACGTACCGT 643 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27753483576 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5