BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01700.1
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477345 jgi|Araly1|477345|fgenesh2_kg.3__46__AT3G01700.1 743 0.0
> Ahg477345 jgi|Araly1|477345|fgenesh2_kg.3__46__AT3G01700.1
Length=678
Score = 743 bits (402), Expect = 0.0
Identities = 549/615 (89%), Gaps = 29/615 (5%)
Strand=Plus/Plus
Query 1 ATCTGAAGCTTCTGCAGTATTCA-AAC-AAATAAAATATACTGCTTTAGCTTTGG----- 53
||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||
Sbjct 1 ATCTGAAGCTTCTGCAGTATTCAGAACAAAATAAATTATACTGCTTTAGCTTTGGAACAA 60
Query 54 --ACACCTCCTCTTACTAATCTCTATAACTATA--TTT--AA--AAAGTAGAAAATAATG 105
|||||||||||| |||||||||||| |||| ||| || ||| | |||| ||||
Sbjct 61 CAACACCTCCTCTTTTTAATCTCTATAATTATATTTTTAAAATTAAAAAAAAAAAAAATG 120
Query 106 GCACGTCTATTTGTCGTAGTTGCCCTTTTGGCTTTGGCCGTGGGCACCGTATTCGCCGCC 165
||||||| | |||||||| ||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 121 GCACGTCAAATTGTCGTATTTGCCCTCTTGGCTTTGGCCGTGGCCACCGCATTCGCCGCC 180
Query 166 GATGCACCTTCAGCTGCACCCACCGCCTCACCAACCAAA-TCCCCA--ACCAAGGCTCCT 222
||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||
Sbjct 181 GATGCACCTTCAGCTGCACCCACCGCCTCTCCGACCAAAGCCCCCACCACCAAGGCTCCT 240
Query 223 GCCGCTGCACCCAAATCCTCCGCCGCCGCACCGAAAGCATCATCCCCTGTTGCTGAGGAA 282
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 GCAGCTGCACCCAAATCCTCCGCCGCCGCACCGAAAGCATCATCCCCTGTTGCAGAGGAA 300
Query 283 CCCACC-CCTGAAGACGACTACTCTGCAGCCAGCCCCAGTGACTCCGCCGAGGCACCCAC 341
|||||| || ||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 301 CCCACCTCC-GAAGACGACTATTCGGCAGCCACCCCCAGTGACTCCGCCGAGGCACCCAC 359
Query 342 CGTCTCCTCCCCACCCGCTCCTACCCCCGAAGCCGATGGTCCCTCCTCCGACGGACCCTC 401
||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 360 CGTCTCCTCCCCACCGGCTCCTACCCCCGAAGCCGATGGTCCCTCAACCGATGGACCCTC 419
Query 402 ATCTGATGGACCCGCCGCCGCCGAGTCACCCAAAAGTGGCGCCACGACTAATGTGAAGCT 461
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATCTGATGGACCCACCGCCGCCGAGTCACCCAAAAGTGGCGCCACGACTAATGTGAAGCT 479
Query 462 CTCCATCGCCGGCACTGTCGCCGCCGCCGGATTCTTCATCTTCTCTCTCTAAGTTTTGTT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 480 CTCCATCGCCGGCACTGTCGCCGCCGCCGGATTCTTCATCTTCTCTCTCTAAGTTTT-TT 538
Query 522 TTTTAATTAAACTTGAGACGGAATCATAAGAT-TCACATTATGAG-ATGAGGCCGTATCT 579
|| | ||||||||| |||||||||||| || | ||| | ||||| | | ||||
Sbjct 539 TT--A-TTAAACTTGGGACGGAATCATATTATCTGTG-TTAACATTATGAGAC-G-ATCT 592
Query 580 CTTTAACTAACTAAC 594
|||||||||||||||
Sbjct 593 CTTTAACTAACTAAC 607
Score = 69.4 bits (37), Expect = 3e-11
Identities = 40/41 (98%), Gaps = 1/41 (2%)
Strand=Plus/Plus
Query 619 TAATCAAGAGATTGAATGGAGTTATTATTATTACGTACCGT 659
||| |||||||||||||||||||||||||||||||||||||
Sbjct 604 TAA-CAAGAGATTGAATGGAGTTATTATTATTACGTACCGT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27753483576
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5