BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01710.1
Length=1591
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477343 jgi|Araly1|477343|fgenesh2_kg.3__44__AT3G01710.2 1899 0.0
Ahg476003 jgi|Araly1|476003|fgenesh2_kg.2__1133__AT1G68760.1 124 2e-27
Ahg493912 jgi|Araly1|493912|fgenesh2_kg.7__3345__AT5G40700.2 87.9 2e-16
Ahg484367 jgi|Araly1|484367|fgenesh2_kg.5__359__AT3G26050.1 84.2 3e-15
> Ahg477343 jgi|Araly1|477343|fgenesh2_kg.3__44__AT3G01710.2
Length=1437
Score = 1899 bits (1028), Expect = 0.0
Identities = 1335/1471 (91%), Gaps = 70/1471 (5%)
Strand=Plus/Plus
Query 154 GGAGATTCTCTTGGTGCTTTAGGACAGTCTGTGTCCTTCGGAAGATTCATGTCGGAGAAA 213
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 GGAGATTCTCTTGGTGCTTTAGGACAGTCTGTGTCCTTCGGGAGATTCATGTCGGAGAAA 60
Query 214 CTTGACTGGGAGAAATGGTCTGCTTTCTCCACACAGAACCCTTACGTGGCTGAGGCAGAG 273
||||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||||
Sbjct 61 CTTGACTGGGAAAAATGGTCTGCTTTCTCCACACACAACCCTTATGTGGCGGAAGCAGAG 120
Query 274 AGATACTCTAAGCCCGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCACTACAAG 333
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AGATACTCAAAGCCCGGATCTGTCGCTCAGAAGAAAGCTTTCTTTGAAGCTCACTACAAG 180
Query 334 AAAGTCGCTGCTGCTAGAAAAGCTGCTGCTGAAGAGGCACTCTTGCTTCAGCAGCAAATC 393
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 AAACTCGCTGCTGCTAGAAAAGCTGCTGCTGAAGAGGCCCTCTTGCTTCAGCAGCAAATC 240
Query 394 CCTAAACCCCAACCAGAGAAGTCTCCAGTTCAAGAAGAAGATATCAATGAAGGAGAAAAG 453
| |||||||||||| || | | ||||||||||||||||||| ||||| |||
Sbjct 241 CTTAAACCCCAACC-----AG--T-C----CAAGAAGAAGATATCAATGGAGGAGGAAAC 288
Query 454 AAAGATTGGATGGTCTCAAAACCGGATCTTGAGA-TTCCAAGAGGATCTTTAGATGTTTC 512
||||||||| ||||||| |||||||||||||||| || |||||||||||||||||| |||
Sbjct 289 AAAGATTGGCTGGTCTCGAAACCGGATCTTGAGACTT-CAAGAGGATCTTTAGATGATTC 347
Query 513 TGCTCAATTGAAATTACTTGCA-GAGAAAGAAGGCCG-ATTT--A-GTAATAGACAATCT 567
|||| || ||||||| || ||| ||| ||||||| || |||| | ||||||||||||||
Sbjct 348 TGCTGAAATGAAATTCCTAGCAGGAG-AAGAAGG-CGTATTTAGAGGTAATAGACAATCT 405
Query 568 GATGAGAAAGAGAACTGTGGCATGGCTGAGTCAGAGATCAATGGCC---G------C-AC 617
|||||||||||||||||||| |||||||||||||||||||| ||| | | ||
Sbjct 406 GATGAGAAAGAGAACTGTGGGTTGGCTGAGTCAGAGATCAAT-GCCAAAGTTTCTTCTAC 464
Query 618 AGCTGAAGAACAAGTAGATGAGGAGAAACCTATACTAAAGTCTGTGAAGAAGAAATCCAA 677
|| || |||||| || ||||||||||| ||||| |||| |||||| ||||||||||||||
Sbjct 465 AGGTGGAGAACATGTGGATGAGGAGAAGCCTATTCTAATGTCTGTAAAGAAGAAATCCAA 524
Query 678 AGATTCACAAC---CAAAGAGTAGTACTAAACCAAGAGTCTCTAAGTACAATTCATCGGA 734
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 525 AGATTCACAACAATCAAAGAGCAGTACTAAATCAAGAGTCTCTAAGTACAATTCATCGGA 584
Query 735 GAGGACTCCAAGTAAAAAGTCTAATAACAAGAGCAGCTCGTACACTTTCACGCCTGCAAA 794
||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 585 GAGGACTCCAAGTCAAAAGTCTGGTAACAAGAGCAGCTCTTACACTTTCACACCTGCAAA 644
Query 795 AGAGTTCAATAGATTGGTGTCCATCATAAGGAAGATTGATGGGTCAAGAGCTTCTTCTAA 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 AGAGTTCAATAGATTGGTGTCCATCATAAGGAAGATTGATGGGTCAAGAGCTTCTTCTAA 704
Query 855 ACCAACCAAAGACTGCAAAACTCCTCTCCGGACA-C--CATCAAACAAGGTGTCTGCAAA 911
|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 705 ACCACCCAAAGACTGCAAAACTCCTCTCCGGACACCATCATCAAACAAGGTGTCTGCAAA 764
Query 912 GGGAATGGTTGAAGACTCCTTGTCCACACCTTTATCGAGTAACACAAGTAAGTGCAGAGG 971
|||||| | ||| || || ||||||||||||||||| ||| | || || | |||||
Sbjct 765 GGGAATTGCTGATGATTCTTTGTCCACACCTTTATCTAGT-A-AC-AG--A----AGAGG 815
Query 972 GAAGATAGCTCCTAATTCTTCTGCCAAGACAGGTCGAGGAAGATGGAATTTCCTCCCTGC 1031
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GAAGATAGCTCCTGATTCTTCTGCCAAGACAGGTCGAGGAAGATGGAATTTCCTCCCTGC 875
Query 1032 GGAGACACCGAGCTGTTTTACACCGTTTGGCTTaagaacagaggagagagcagagagaag 1091
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 876 AGAGACACCGAGCTGTTTTACACCGTTTGGCTTAAGAACAGAGGAGAGGGCAGAGAGAAG 935
Query 1092 aaaaaagaagctagaggggaaattcaaggaaatggagaCACAGAACCAGAAGGCGGAGGA 1151
||||||||||||||||| ||||||||| | ||||||| |||||||||||||||| |||||
Sbjct 936 AAAAAAGAAGCTAGAGGAGAAATTCAAAGCAATGGAGCCACAGAACCAGAAGGCAGAGGA 995
Query 1152 GAGGAGTGTGGAGAAGGAAGAGAGTAAACTAAGGCAAAGGCTATGCTTCAAAGCGAAGCC 1211
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 996 AAGGAGTGTGGAGAAGGAAGAGAGTAAACTACGGCAAAGGCTATGCTTCAAAGCGAAGCC 1055
Query 1212 ACTTCCAAATTTCTACAAACAGAGACCAAAATCAACAGACCAAACTAAGAAAGCTCTGTT 1271
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1056 ACTTCCAAATTTCTACAAACAGAGACCAAAATCAACTGACCAAACTAAGAAAGCTCTGTT 1115
Query 1272 ACAGTAGCAGAGAGGTCTTACAGAAACTCCCTATCAT-CATC-T-TT-CAGAGAGATATT 1327
|||||||||||||||| ||| |||||||||||||||| |||| | || ||||||||||||
Sbjct 1116 ACAGTAGCAGAGAGGTGTTAAAGAAACTCCCTATCATCCATCATCTTACAGAGAGATATT 1175
Query 1328 GCGCTGACTTAGCGCCTGTGGCTGTGGGGAGAACTATCAAAACCGGATTGCCTC-AAAAA 1386
|||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 1176 GCGCGGACTTAGCGCCTGTGGCTGTGTGGAGAACTATCAAAACCGGTTTGCCTCAAAAAA 1235
Query 1387 AGGATTAGTTTGGAATTGTTGACATACTGTATTTGGTTTTATTCCAAGAAGGAA-TATTG 1445
||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||
Sbjct 1236 AGGATTAGTTTGGAATTGTTGAC--A---TATTTGGTTTTATTCCAAGAA-GAAGTATTG 1289
Query 1446 AATTTTACTAGATTGCATTG--T--ATGAA-TATTTGTAAACTTTGTTTATATATGATTT 1500
|||||||||||||||||||| | ||||| ||||||||||| ||| ||||||||| |||
Sbjct 1290 AATTTTACTAGATTGCATTGTATGAATGAATTATTTGTAAAC-TTG-TTATATATGCTTT 1347
Query 1501 GAAAACA-CAAA--ATAAGAAAGAAAGGGGGCATTCCGAGAATTGAACTCGGGACCTCTC 1557
||||| | ||| | || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1348 GAAAA-AGGAAAGGAGAAAAAAAAAAGGGGGCATTCCGAGAATTGAACTCGGGACCTCTC 1406
Query 1558 GCACCCTAAGCGAGAATCATACCACTAGACC 1588
|||||||||||||||||||||||||||||||
Sbjct 1407 GCACCCTAAGCGAGAATCATACCACTAGACC 1437
> Ahg476003 jgi|Araly1|476003|fgenesh2_kg.2__1133__AT1G68760.1
Length=627
Score = 124 bits (67), Expect = 2e-27
Identities = 67/67 (100%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 1525 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 1584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GGGGCATTCCGAGAATTGAACTCGGGACCTCTCGCACCCTAAGCGAGAATCATACCACTA 551
Query 1585 GACCAAA 1591
|||||||
Sbjct 550 GACCAAA 544
> Ahg493912 jgi|Araly1|493912|fgenesh2_kg.7__3345__AT5G40700.2
Length=1023
Score = 87.9 bits (47), Expect = 2e-16
Identities = 110/139 (79%), Gaps = 9/139 (6%)
Strand=Plus/Plus
Query 208 GAGAAACTTGACT-GGGAGAAATGGTC-TGCTTTCTC-CACACAGAACCCTTACGTGGCT 264
||||| ||||| | |||| |||||||| | ||| || || | |||| || || | |
Sbjct 195 GAGAATCTTGAATGGGGA-AAATGGTCAAG-TTTTTCGCATA-AGAA---GTATGTCGAT 248
Query 265 GAGGCAGAGAGATACTCTAAGCCCGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCT 324
|| || |||| || |||| || | | ||||||||||||||||||||||||||||||||||
Sbjct 249 GAAGCCGAGAAATTCTCTCAGTCTGAATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCT 308
Query 325 CACTACAAGAAAGTCGCTG 343
|| ||||||||| | ||||
Sbjct 309 CATTACAAGAAAATAGCTG 327
> Ahg484367 jgi|Araly1|484367|fgenesh2_kg.5__359__AT3G26050.1
Length=1947
Score = 84.2 bits (45), Expect = 3e-15
Identities = 94/117 (80%), Gaps = 5/117 (4%)
Strand=Plus/Plus
Query 220 TGGGAGAAATGGTCTGCTTTCTCCACACAGAACCCTTACGTGGCTGAGGCAGAGAGATAC 279
||||||| |||||| ||||| | || ||||| | |||| ||| |||| ||||| |
Sbjct 256 TGGGAGAGATGGTCAGCTTT-T--ACTCAGAATCGTTACTTGGAAGAGGTTGAGAGGT-T 311
Query 280 T-CTAAGCCCGGATCTGTTGCTCAGAAGAAAGCTTTCTTTGAAGCTCACTACAAGAA 335
| |||| || || ||||| ||||||||||||||||||||||||||||| | ||||||
Sbjct 312 TACTAAACCTGGTTCTGTGGCTCAGAAGAAAGCTTTCTTTGAAGCTCATTTCAAGAA 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59611233425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5