BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01730.1

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477341 jgi|Araly1|477341|fgenesh2_kg.3__42__AT3G01730.1           346    8e-95


> Ahg477341 jgi|Araly1|477341|fgenesh2_kg.3__42__AT3G01730.1
Length=326

 Score =  346 bits (187),  Expect = 8e-95
 Identities = 297/345 (86%), Gaps = 27/345 (8%)
 Strand=Plus/Plus

Query  1    GACTGTATCAACTAACTAAAAATACAGAAAGAGAAATTAAAAGAAAGAGAGGAGATCAAA  60
            |||||||||||||||||||||| | |||| || ||||||  ||||||||| |||||||||
Sbjct  1    GACTGTATCAACTAACTAAAAA-AGAGAATGACAAATTAGGAGAAAGAGAAGAGATCAAA  59

Query  61   TATTGTAGCAATGAGAGCTTTCAGCTTAATGATATGTGTTCTCGTCTTGGCAACGTTGAT  120
            ||||| |||||||||| |||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct  60   TATTGCAGCAATGAGATCTTTCAGCTTAATGATATGTATTCTCATCTTGGCAATGTTGAT  119

Query  121  TATGGTGGCCGAGTCTAAGTCTTCCTATAGTGGGAACGACGAG----ACACT-C-ACTCC  174
            |||||||||||||||   |   |||||| ||||||||||||||    ||||| |  ||||
Sbjct  120  TATGGTGGCCGAGTC---G---TCCTATGGTGGGAACGACGAGAAACACACTGCTCCTCC  173

Query  175  TCCTCCTCCGATGGCTCCTTCACCGTCACCAACTGGTACTGACGGCGGTCACTTTGGTGA  234
            ||||||||| |||||||||||||| ||||| |     |||      ||||||||||||||
Sbjct  174  TCCTCCTCCAATGGCTCCTTCACCATCACC-A-----ACT------GGTCACTTTGGTGA  221

Query  235  ACCCAAGACGCTTCTACCACCTCCAAACGCCGCCACTTTCACCACTTGCCCGCTGTTAAT  294
            |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct  222  ACCCAAGACGCTTCCACCACCTCCAAACGCCGCCACTTTCCCCACTTGCCCGCTGTTTAT  281

Query  295  CACCTCAACATTGATTAGTGCCTTGGCTTTC-GTCTTCTAATATA  338
            |||| ||||||||||||||| | |||||||| | |||||||||||
Sbjct  282  CACCACAACATTGATTAGTGTCATGGCTTTCAG-CTTCTAATATA  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15491169134


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5