BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G01740.1

Length=821
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927583 jgi|Araly1|927583|scaffold_300040.1                        586    8e-167


> Ahg927583 jgi|Araly1|927583|scaffold_300040.1
Length=419

 Score =  586 bits (317),  Expect = 8e-167
 Identities = 371/397 (93%), Gaps = 3/397 (1%)
 Strand=Plus/Plus

Query  98   GAGATGAACCGTATTGGATTGATAAGGGGATCATCATCCAAGGATGTAGTCCGGAGAACG  157
            |||||||||||||||||||||||||| ||   ||||||||||||||| | |||||| |||
Sbjct  19   GAGATGAACCGTATTGGATTGATAAGTGG---ATCATCCAAGGATGTTGCCCGGAGGACG  75

Query  158  TTTGCAGCAGCAGCTAGTAAAGCCAAGAAAGGTGGCAAAGGAGGTGGAGCCAGCGATGCT  217
            || || ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  76   TTCGCTGCAGCCGCTAGTAAAGCCAAGAAAGGTGGCAAAGGAGGAGGAGCTAGCGATGCT  135

Query  218  CCTAAAGGTTCCAGCTTGACCAAAGAGATCAAATCCACCACTGTTGTTGGTGCCAATACT  277
            ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  136  CCTAAAGGTTCCACCTTGACCAAAGAGATCAAATCCACCATTGTTGTTGGTGCCAATACT  195

Query  278  CTCAAAGACGGATCTGATCCCAAGATCTTGCCTGATTCTGATTACCCTGATTGGCTCTGG  337
            |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  196  CTCAAAGATGGATCCGATCCCAAGATCTTGCCTGACTCTGATTACCCTGATTGGCTCTGG  255

Query  338  CATCTCCTCGATAAGCGACCAGCTCTCAGTGAGCTTAGGAGGAAGAACGTCGAGACTCTT  397
            ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  256  CATCTTCTCGATAAGCGACCAGCGCTTAGTGAGCTTAGGAGGAAGAACGTCGAGACTCTT  315

Query  398  CCCTACGATGATCTCAAACGTTTTGTCAAGCTCGACACACGGGGTAAAATCAAGGAGAAC  457
            ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  316  CCCTATGATGATCTCAAACGTTTTGTCAAGCTCGACACACGAGCTAAAATCAAGGAGAAC  375

Query  458  AACTCCATCAAGGCCAAAAACTGAGAGATGTAAGATG  494
            ||||| ||||||||||| |||||||| ||||||||||
Sbjct  376  AACTCTATCAAGGCCAAGAACTGAGACATGTAAGATG  412



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30345841932


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5