BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01760.1
Length=1368
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927581 jgi|Araly1|927581|scaffold_300038.1 2067 0.0
Ahg475192 jgi|Araly1|475192|fgenesh2_kg.2__322__AT1G61270.1 1334 0.0
> Ahg927581 jgi|Araly1|927581|scaffold_300038.1
Length=1390
Score = 2067 bits (1119), Expect = 0.0
Identities = 1274/1349 (94%), Gaps = 10/1349 (1%)
Strand=Plus/Plus
Query 22 ATCCAAGACCAACATCTTGTGGAGGAGGATCAACCCTTTGATCTGGAAGATTGGCTTCCA 81
|||| ||| |||||| || | | |||||| ||| ||||||||||||||||||||||||||
Sbjct 30 ATCCCAGATCAACAT-TT-T-GTGGAGGACCAATCCTTTGATCTGGAAGATTGGCTTCCA 86
Query 82 ATCACAGCATCAAGGAATGCCAATTGGTATTATTCAGCTTTCCACAACGTCACTGCCATT 141
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 ATCACCGCATCACGAAATGCCAATTGGTATTATTCAGCTTTCCACAACGTCACTGCCATT 146
Query 142 GTTGGTGCTGGCGTTCTCGGTCTTCCTTACGCCATGTCAGAGCTTGGATGGGGACCTGGG 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 GTTGGTGCTGGCGTTCTCGGTCTTCCTTACGCCATGTCAGAGCTTGGATGGGGACCTGGG 206
Query 202 GTTGTGGTGTTGATCCTGTCATGGGTGATCACGTTATACACCCTCTGGCAAATGATTGAG 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 GTTGTGGTGTTGATCCTGTCATGGGTGATCACGTTATACACCCTCTGGCAAATGATTGAG 266
Query 262 ATGCATGAGATGTTTGAAGGGCAACGGTTCGATAGGTACCATGAGCTGGGTCAGGCAGCC 321
||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||
Sbjct 267 ATGCACGAGATGTTTGAGGGGCGACGGTTCGATAGGTACCATGAGCTGGGCCAGGCAGCC 326
Query 322 TTTGGTAAAAAGCTTGGTTTGTACATCATCGTGCCCCTACAACTACTTGTCGAGATCAGT 381
||||||||||| ||||||||||||||||||||||| |||||| | ||||| || ||||||
Sbjct 327 TTTGGTAAAAAACTTGGTTTGTACATCATCGTGCCGCTACAATTGCTTGTTGAAATCAGT 386
Query 382 GTGTGCATAGTCTATATGGTCACTGGAGGTAAATCCCTGAAGAATGTACATGACCTTGCT 441
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 387 GTGTGCATAGTCTATATGGTGACTGGAGGTAAATCCCTGAAGAATGTACATGACCTTGCC 446
Query 442 TTGGGAGATGGTGACAAGTGCACAAAGCTTAGAATTCAACACTTCATTTTGATCTTTGCC 501
||||||||| |||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 447 GTGGGAGATG---ACAAGTGCACAAAGATAAGAATTCAACACTTCATTATGATCTTTGCC 503
Query 502 TCTTCACAGTTCGTGCTCTCCCTTCTTAAGAACTTCAACTCCATTTCTGGTGTCTCCTTG 561
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TCTTCCCAGTTCGTGCTCTCCCTTCTTAAGAACTTCAACTCCATTTCTGGTGTCTCCTTG 563
Query 562 GTAGCTGCTGTCATGTCTGTCAGCTATTCTACAATTGCTTGGGTAGCCTCGCTGAGGAAG 621
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 564 GTAGCTGCTGTCATGTCTGTCAGCTATTCCACAATTGCTTGGGTAGCCTCGCTGAGGAAG 623
Query 622 GGTGCCACCACCGGGAGTGTAGAGTACGGCTATAGAAAAAGAACAACCTCAGTGCCATTA 681
||||||||||| |||||||| ||||||||||||| ||||||||||||||| ||||| |||
Sbjct 624 GGTGCCACCACGGGGAGTGTGGAGTACGGCTATAAAAAAAGAACAACCTCCGTGCCGTTA 683
Query 682 GCCTTCTTAAGTGCACT-GGGTGAAATGGCTTTTGCGTACGCAGGTCATAACGTTGTTTT 740
| ||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct 684 GACTTCTTAAGTGCACTAGGG-GAGATGGCTTTTGCGTACGCAGGTCATAACGTTGTTTT 742
Query 741 GGAAATTCAAGCAACGATCCCATCAACACCAGAGAACCCATCAAAACGACCCATGTGGAA 800
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 743 AGAAATTCAAGCAACGATCCCATCAACACCAGAAAATCCATCAAAACGACCCATGTGGAA 802
Query 801 GGGAGCGGTTGTAGCCTATATCATTGTAGCTTTCTGCTACTTCCCTGTGGCACTTGTAGG 860
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 803 GGGAGCCGTTGTAGCCTATATCGTTGTAGCTTTCTGCTACTTCCCTGTGGCACTTGTAGG 862
Query 861 TTTCAAGACCTTTGGAAACAGTGTTGAAGAGAGCATCCTCGAATCACTAACAAAACCAAC 920
||| |||| |||||||||| ||||||||| | ||||||||||||||| ||||||||||
Sbjct 863 GTTCCAGACTTTTGGAAACAATGTTGAAGAAAACATCCTCGAATCACTTACAAAACCAAA 922
Query 921 GGCACTTGTCATTGTGGCCAACATGTTTGTGGTCATACATCTCTTGGGAAGCTACCAGGT 980
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 923 AGCACTTGTCATTGTCGCCAACATGTTTGTGGTCATACACCTCTTGGGAAGCTACCAGGT 982
Query 981 GTATGCGATGCCCGTGTTTGACATGATCGAATCTGTAATGATAAGGATATGGCACTTCAG 1040
||| || |||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 983 GTACGCAATGCCCGTCTTTGACATGATCGAATCTGTAATGATAAAGAAATGGCACTTCAG 1042
Query 1041 TCCAACAAGAGTTCTACGGTTTACCATCCGATGGACTTTTGTGGCCGCCACGATGGGAAT 1100
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1043 TCCAACAAGAGTTCTACGCTTTACCATCCGATGGACTTTTGTGGCCGCCACAATGGGAAT 1102
Query 1101 AGCGGTCGGTTTACCGTATTACAGCGCATTGCTGTCATTTTTTGGGGGATTTGTGTTCGC 1160
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1103 AGCGGTCGGTTTACCTTATTACAGCGCGTTGCTGTCATTTTTTGGGGGATTTGTGTTCGC 1162
Query 1161 CCCGACCACATACTTTATCCCATGCATCATGTGGCTGATCCTAAAGAAACCAAAGAGATT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CCCGACCACATACTTTATCCCATGCATCATGTGGCTGATCCTAAAGAAACCAAAGAGATT 1222
Query 1221 TAGTCTCTCATGGTGTATGAACTGGTTTTGCATCATTTTTGGGCTTGTGCTGATGATCAT 1280
|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1223 TAGTCTGTCATGGTGTATAAACTGGTTTTGCATCATTCTTGGGCTTGTGCTGATGATCAT 1282
Query 1281 AGCACCTATTGGGGGACTGGCCAAACTAATCTATAATATTCAAAAGGGCACTCTACCTAA 1340
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1283 AGCACCTATTGGGGGACTGGCCAAACTAATCTATCATATCCAAAAGGGCACTCTACCTAA 1342
Query 1341 TTC-AAGATGCAACTTACCTAAACACTGA 1368
|| || |||||| |||||||||||||||
Sbjct 1343 CTCCAA-ATGCAAATTACCTAAACACTGA 1370
> Ahg475192 jgi|Araly1|475192|fgenesh2_kg.2__322__AT1G61270.1
Length=1368
Score = 1334 bits (722), Expect = 0.0
Identities = 1117/1305 (86%), Gaps = 38/1305 (3%)
Strand=Plus/Plus
Query 22 ATCC-AAGACCAACATCTTGTGGAGGAGGATCAACCCTTTGATCTGGAAGATTGGCTTCC 80
|||| || ||||| ||||||| |||||||||| | ||||| |||||||||||||||||
Sbjct 31 ATCCTAA-ACCAAGATCTTGT---GGAGGATCAATCATTTGAGCTGGAAGATTGGCTTCC 86
Query 81 AATCACAGCATCAAGGAATGCCAATTGGTATTATTCAGCTTTCCACAACGTCACTGCCAT 140
|||||| |||||| | |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 87 AATCACCGCATCACGAAATGCCAATTGGTACTATTCGGCTTTCCACAACGTCACTGCCAT 146
Query 141 TGTTGGTGCTGGCGTTCTCGGTCTTCCTTACGCCATGTCAGAGCTTGGATGGGGACCTGG 200
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 147 AGTTGGTGCTGGAGTTCTTGGTCTTCCTTACGCCATGTCAGAACTTGGATGGGGACCTGG 206
Query 201 GGTTGTGGTGTTGATCCTGTCATGGGTGATCACGTTATACACCCTCTGGCAAATGATTGA 260
|||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||
Sbjct 207 AGTTGTGGTGTTGATCCTGTCATGGGTCATAACGTTGTACACATTCTGGCAAATGATTGA 266
Query 261 GATGCATGAGATGTTTGAAGGGCAACGGTTCGATAGGTACCATGAGCTGGGTCAGGCAGC 320
|||||| || |||||| ||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 267 GATGCACGAAATGTTTAAAGGGAAACGGTTTGATAGGTACCATGAGCTGGGCCAAGCAGC 326
Query 321 CTTTGGTAAAAAGCTTGGTTTGTACATCATCGTGCCCCTACAACTACTTGTCGAGATCAG 380
|||||| |||||||||||||||||||||| ||||| |||||||| ||||| || |||||
Sbjct 327 CTTTGGCGAAAAGCTTGGTTTGTACATCATAGTGCCGCTACAACTTCTTGTTGAAATCAG 386
Query 381 TG-TGTGCATAGTCTATATGGTCACTGGAGGTAAATCCCTGAAGAATGTACAT-GACCTT 438
|| | ||||||||||||||||| || |||||| |||| |||| ||| | ||| || ||
Sbjct 387 TGCT-TGCATAGTCTATATGGTGACAGGAGGTGAATCGTTGAAAAATATTCATCGA-ATT 444
Query 439 GCTTTGGGAGATGGTGACAAGTGCACAAAGCTTAG-AATTC-AACACTTCATTTTGATCT 496
|| ||||||| || |||||| |||| || | || || |||||||||||||||||
Sbjct 445 TCTGTGGGAGA---ACACGAGTGCAGAAAG-TT-GAAAGTCGTACACTTCATTTTGATCT 499
Query 497 TTGCCTCTTCACAG-TTCGTGCTCTCCCTTCTT-AAGAACTTCAACTCCATTTCTGGTGT 554
||||||||||||| || ||||| || ||||| || || ||||||||||||||||||||
Sbjct 500 TTGCCTCTTCACAACTT-GTGCTTTCTCTTCTAGAA-AATTTCAACTCCATTTCTGGTGT 557
Query 555 CTCCTTGGTAGCTGCTGTCATGTCTGTCAGCTATTCTACAATTGCTTGGGTAGCCTCGCT 614
||| ||||||||||| ||||||||| | |||||||| |||||||||||| |||| || ||
Sbjct 558 CTCTTTGGTAGCTGCCGTCATGTCTATGAGCTATTCCACAATTGCTTGGATAGCTTCACT 617
Query 615 GAGGAAGGGTGCCACCACCGG-GAGTGTAGAGTACGGCTATAGAAA-AAGAACAA--CCT 670
|| ||||||| | || || |||||| ||||| |||| ||| || ||||| |||
Sbjct 618 GACAAAGGGTGTCGT----GGAGAATGTAGAATACGGATATAAAAAGAAAAACAATACCT 673
Query 671 CAGTGCCATTAGCCTTCTTAAGTGCACTGGGTGAAATGGCTTTTGCGTACGCAGGTCATA 730
|||||| ||||| ||||||| ||||| |||| || ||||||||||| || |||||||| |
Sbjct 674 CAGTGCAATTAGGCTTCTTAGGTGCATTGGGGGAGATGGCTTTTGCATATGCAGGTCACA 733
Query 731 ACGTTGTTTTGGAAATTCAAGCAACGATCCCATCAACACCAGAGAACCCATCAAAACGAC 790
|||||||||| ||||||||||||||||| |||||||| ||||| || |||||||||||||
Sbjct 734 ACGTTGTTTTAGAAATTCAAGCAACGATTCCATCAACGCCAGAAAATCCATCAAAACGAC 793
Query 791 CCATGTGGAAGGGAGCGGTTGTAGCCTATATCATTGTAGCTTTCTGCTACTTCCCTGTGG 850
|||||||||||||||| | |||||||| || |||||||||||||| |||||||||||||
Sbjct 794 CCATGTGGAAGGGAGCCATCGTAGCCTACATTATTGTAGCTTTCTGTTACTTCCCTGTGG 853
Query 851 CACTTGTAGG-TTTCAAGACCTTTGGAAACAGTGTTGAAGAGAGCATCCTCGAATCACTA 909
| |||||||| ||| || |||||||||| |||| ||| | ||| ||| |||| ||
Sbjct 854 CTCTTGTAGGGTTTTG-GATATTTGGAAACAACGTTGCAGACAACATTCTCAAATCGCTC 912
Query 910 ACAAAA-CCAAC-GGCACTTGTCATTGTGGCCAACATGTTTGTGGTCATACATCTCTTGG 967
| | || || || |||| | ||||||||||||||||||||||| ||||||||| |||
Sbjct 913 -CGGGATCCCACCGG-ACTTATGATTGTGGCCAACATGTTTGTGGTTATACATCTCATGG 970
Query 968 GAAGCTACCAGGTGTATGCGATGCCCGTGTTTGACATGATCGAATCTGTAATGATAAGGA 1027
|||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||
Sbjct 971 GAAGCTACCAGGTGTACGCAATGCCCGTGTTTGATATGATCGAATCTGTAATGATAAAGA 1030
Query 1028 TATGGCACTTCAGTCCAACAAGAGTTCTACGGTTTACCATCCGATGGACTTTTGTGGCCG 1087
||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1031 AATGGCACTTCAATCCAACAAGAGTTCTACGGTATACCATCCGCTGGACTTTTGTGGCCG 1090
Query 1088 CCACGATGGGAATAGCGGTCGGTTTACCGTATTACAGCGCATTGCTGTCATTTTTTGGGG 1147
|||||||||| ||||| |||| | |||| |||| ||| || ||||||||||||||||| |
Sbjct 1091 CCACGATGGGGATAGCAGTCGCTCTACCATATTTCAGTGCTTTGCTGTCATTTTTTGGAG 1150
Query 1148 GATTTGTGTTCGCCCCGACCACATACTTTATCCCATGCATCATGTGGCTGATCCT-AAAG 1206
|||| || || ||||||||||||||||||||||| |||||||| ||| |||| | |||
Sbjct 1151 GATTCGTATTTGCCCCGACCACATACTTTATCCCTTGCATCATATGGTTGATATTGAAA- 1209
Query 1207 AAACCAAAGAGATTTAGTCTCTCATGGTGTATGAACTGGTTTTGCATCATTTTTGGGCTT 1266
||||||||||||||| |||| ||||||||||| || ||| ||||||||||| ||||| ||
Sbjct 1210 AAACCAAAGAGATTTGGTCTGTCATGGTGTATCAATTGGATTTGCATCATTCTTGGGGTT 1269
Query 1267 GT-GCTGATGATCATAGCACCTATTGGGGGACTGGCCAAACTAAT 1310
| | ||||||| |||||||||||||||||||| |||||||||||
Sbjct 1270 CTAG-TGATGATTATAGCACCTATTGGGGGACTCGCCAAACTAAT 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51199077531
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5