BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01770.1
Length=2288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477338 jgi|Araly1|477338|fgenesh2_kg.3__39__AT3G01770.1 2828 0.0
> Ahg477338 jgi|Araly1|477338|fgenesh2_kg.3__39__AT3G01770.1
Length=2228
Score = 2828 bits (1531), Expect = 0.0
Identities = 1980/2187 (91%), Gaps = 69/2187 (3%)
Strand=Plus/Plus
Query 144 TCTGTTTCTGCTGGAGAAGATTTACGCTTGTTCCTCGGTTCTCTTACTTCTGCTCCGGTT 203
||||| |||||| ||||||||||||||| | ||||||||||||| |||| ||| |||||
Sbjct 68 TCTGTCTCTGCTCCAGAAGATTTACGCTTCTGCCTCGGTTCTCTTGCTTCCGCTTCGGTT 127
Query 204 CGATCGCTTGCTAAGTGTTTCGAGTTGGTTCG---C-ACTTCGGTGGGCGATATCATGAC 259
|||||||||||| ||| |||||||| |||| | | | || |||||||| || |||||
Sbjct 128 CGATCGCTTGCTCAGTATTTCGAGTCGGTTAGTTCCGAATT-GGTGGGCG--AT-ATGAC 183
Query 260 TGTGAGGAACGGTGGTTTCCCAGGAGATTA-TAATCGTAACAGTTTTGACTCTCCCGGCG 318
|||||||||||||||||||||||||||||| | |||||| ||| |||||| |||| ||||
Sbjct 184 TGTGAGGAACGGTGGTTTCCCAGGAGATTACT-ATCGTACCAGCTTTGACACTCCTGGCG 242
Query 319 GCTGTGATGATAGCCCCAATGCTTCCAAGGATGATGAAACTTTTGGTGTCCCGAGAATAG 378
|||||||||||||||| ||||||||| || |||||||||||||||||||||||||| |
Sbjct 243 GCTGTGATGATAGCCCTAATGCTTCC---GAGGATGAAACTTTTGGTGTCCCGAGAATGG 299
Query 379 TTTTACCCTTGTCTGACTTGTCATCATCAGAAAGGAGAAAG-TGGATTCATACGCTTCGT 437
|||||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||
Sbjct 300 TTTTACCCTTGTCTGACTTGTCATCATCGGAAAGGAAAAAGCT-GATTCATACGCTTCGT 358
Query 438 CAGGAGCTGGAACAACTACGGTCCTTTCAGAAGAGTGTTGGGGACCTTCTTCCTATATCT 497
||||||||||||||| |||| ||||||||||||||| ||| ||| | |||||||| |||
Sbjct 359 CAGGAGCTGGAACAAATACGCTCCTTTCAGAAGAGTCTTGTGGA-C--CTTCCTATGTCT 415
Query 498 AAGATTGTTACTAGTACACCTG-CA--AGTAATGTGTCTCGCCCCAAGAGTTTTGGAATG 554
|| |||| | |||||||| | | |||||||||||| |||||||||||| |||||
Sbjct 416 AACATTG----T--TACACCTGTGAGTAATAATGTGTCTCGACCCAAGAGTTTTAGAATG 469
Query 555 TCACGATGCTCTACTGGCCCTGGAAAAAGGGTGCTCCCCTTCACAGCAACCAAACCAGAG 614
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 470 GCACGATGCTCTACTGGCCCTGGAAAAAGGGTGCTCCCCTTTTCAGCAACCAAACCTGAG 529
Query 615 CCAGTCACCACTTCCACTATGCTTCGGATGAAGCAATGTGAGAGCCTCCTTAAACGATTG 674
|||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||
Sbjct 530 CCAGTCACCACTTCTACAATGCTTCGGATGAAGCAATGTGAGACCCTCCTCAAACGATTG 589
Query 675 ATGTCGCAGCAGCATTGTTGGCTCTTTAATACCCCTGTGGACGTCGTCAAGCTCAACATT 734
||||| || ||||| || |||||||||||||||||||| || || || ||||||||||||
Sbjct 590 ATGTCCCAACAGCACTGCTGGCTCTTTAATACCCCTGTTGATGTGGTTAAGCTCAACATT 649
Query 735 CCTGATTATTTCACCATTATCAAACATCCTATGGATTTAGGAACTGTTAAA-AGCAAGTT 793
|||||||||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 650 CCTGATTATTTCACTATTATCAAACAGCCTATGGATTTAGGAACTG-TAAAGAGCAAGTT 708
Query 794 AACTTCCGGCACGTATTCAAGCCCTTCAGAGTTTTCTGCTGATGTCCGTCTTACTTTCCG 853
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 709 AACTTCCGGCACCTATTCAAGCCCATCAGAGTTTTCTGCTGATGTCCGTCTTACTTTCCG 768
Query 854 CAATGCTATGACTTATAACCCGTCAGATAATAATGTGTATCGCTTCGCTGATACTCTCAG 913
|||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 769 CAATGCAATGACATATAACCCGTCAGATAATAATGTTTATCGTTTCGCTGATACACTCAG 828
Query 914 CAAGTTTTTTGAAGTGAGATGGAAAACTATCGAGAAGAAGTCATCCGGAACCAAATCTGA 973
|||||||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct 829 CAAGTTTTTTGAAGTGAGGTGGAAAACTTTTAATAAGAAGTCATCCGGAACCAAATCTGA 888
Query 974 ACCAAGTAACTTGGCTACTCTTGCTCACAAAGATATTGCGATACCTGAGCCTGTGGCTAA 1033
|||||||||||||| ||||| |||||||||||||||||| || ||||||||| |||||||
Sbjct 889 ACCAAGTAACTTGGGTACTCATGCTCACAAAGATATTGCAATGCCTGAGCCTCTGGCTAA 948
Query 1034 GAAGAGAAAGATGAATGCTGTGAAACGTAACAGCCTCTTAGAGCCTGCTAAGCGGGTTAT 1093
||||||||||||||||||| | || | | |||||||||||||||||||||| ||||||||
Sbjct 949 GAAGAGAAAGATGAATGCTCTCAACCATGACAGCCTCTTAGAGCCTGCTAAACGGGTTAT 1008
Query 1094 GACAGATGAGGATAGAGTAAAGCTTGGCAGAGATTTGGGGTCCTTGACAGAATTCCCTGT 1153
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1009 GACAGATGAGGATAGAGTTAAGCTTGGCAGAGATTTGGGGTCCTTGACAGAATTCCCGGT 1068
Query 1154 ACAGATAATAAATTTCCTGAGAGATCACAGCTCCAAGGAAGAGAGATCTGGAGATGATGA 1213
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1069 ACAGATAATAAATTTCCTGAGAGGTCACAGCTCCAAGGAAGGGAGATCTGGAGATGATGA 1128
Query 1214 GATAGAGATTGACATCAATGATCTCAGTCATGATGCCTTGTTCCAGTTGCGGGATCTCTT 1273
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1129 GATAGAGATTGACATTAATGATCTCACTCATGATGCCTTGTTCCAGTTGCGGGATCTCTT 1188
Query 1274 TGATGAGTTTCTGCGAGAAAATCAAAAGAAAGAT-TCAAACGGTGAACCCTGTGTGTTAG 1332
|||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||
Sbjct 1189 TGATGAGTTTTTGCGAGAAAATCAAAAGAAAGATGT-AAACGGTGAACCCTGTGAGTTAG 1247
Query 1333 AGCTTTTACATGGGTCAGGGCCAGGAAATTCATTGACGCAACACTGTGATGGGAGTGAAT 1392
|||||||| |||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1248 AGCTTTTAGATGGGTCAGGGCCAGGAAATTCATTGACGCAACACTATGGTGGGAGCGAAA 1307
Query 1393 TGGAGGACGAGGATGTTGACATTGGTAATTATGAGCACCCTATATCTCACATCTCAACTG 1452
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 1308 TGGAGGACGAGGATGTTGACATTGGTAATTATGAGCACCCTAGATCTCACATCCCATCTG 1367
Query 1453 TCAGAACAGAAAAAGATTCCGTCGGTGGATTGAATCAGATGGAAGATGCATCCAGAGGGA 1512
|||| |||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||
Sbjct 1368 TCAGGACAGAAAAAGATTCCGTCGGCGGATTAAATCAGCTGGAAGATGCATCCAAAGGG- 1426
Query 1513 AGCTAAGTCTTATTGAGGGGGCAGATGGTCATCAAGATGGAAATAGTGCTCCAAAAGAGA 1572
|| | || ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1427 AG----G-CTAATTGAGGGGGCAGATGGTCATCAAGATGGAAATAGTGCTCCGAATGAGA 1481
Query 1573 AGGAACTACCTCCAGAAAAGCGTTACAGGGCTGCTCTATTGAAAAATCGATTTGCGGATA 1632
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1482 AGCAACTACCTCCAGAAAAGCGTTACAGGGCTGCTCTATTGAAAGATCGATTTGCGGATA 1541
Query 1633 TAATCTTGAAGGCTCAAGAGATAACTCTTAATCAGAATGAGAAACGAGACCCAGAGACAC 1692
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1542 TAATCTTGAAGGCTAAAGAGATAACTCTTAATCAGAATGAGAAACGCGACCCAGAGAAAC 1601
Query 1693 TGCAACGTGAGAAGGAAGAACTGGAATTGCAAaagaagaaagaaaaagcacggttacaag 1752
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1602 TGCGACGTGAGAAGGAAGAACTCGAATTGCAAAAGAAGAAAGAAAAAGCACGGTTACAAG 1661
Query 1753 cagaagccaaggaagctgaagaagctcgtagaaaagCTGAGGCAC-A-----AG---A-G 1802
|||||||||||||||||||||||||| |||||||||||||||||| | || | |
Sbjct 1662 CAGAAGCCAAGGAAGCTGAAGAAGCTTGTAGAAAAGCTGAGGCACGAGCTGCAGTTGAAG 1721
Query 1803 --GC---T-A----A-GAGGAAACTGGAACTTGAAAGAGAAGCAGCCCGGCAGGCATTGC 1851
|| | | | |||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1722 CTGCGGCTGAGGCTAAGAGGAAACTGGAACTTGAAAGAAAAGCAGCACGGCAGGCATTGC 1781
Query 1852 TTGAGATGGAGAAGTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAAC 1911
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1782 TTGAGATGGAGAAGTCGGTTGAAATAAATGAGAACACAAGGTTTCTCAAGGACCTAGAGC 1841
Query 1912 TGCTCAAAACGGTTAACACGGACCAGTTACGAAATCTAAGAGATGTTGGCTCTGAGTCTG 1971
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1842 TGCTTAAAACGGTTAACACGGACCAGTTAAGAAATCTAAGAGATGTTGGCTCTGACTCTG 1901
Query 1972 ATGGGTTGGCTGTATTTGGGTTTGGAGGAAGTAATCCTCTAGAGCAGCTGGGGCTATTTA 2031
||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 1902 ATGGGTTGGAAGTTTTTGGGTTTGGAGGAAGCAATCCACTAGAGCAGCTGGGGCTCTTTA 1961
Query 2032 TGAAACATGAGGAGGATGAAGATGAATCCGACATGCTTGCGTTTCCAGATCCCGGCAATG 2091
|||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |
Sbjct 1962 TGAAACATGATGAGGATGAAGATGAAGCCGACCTGCTTGCGTTTCCAGATCCCGGCAACG 2021
Query 2092 AAGTAGAAGAGGGTGAAATCGACTGAGATTCATGAGTGT-T-GTGTCTTGGATAACAGCA 2149
||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |||
Sbjct 2022 AAGTAGAAGAGGGTGAAATCGACTGAGATTCATGAGTGTGTTGTGTCTTGGGTAATGGCA 2081
Query 2150 GTCAAGTGTACATGAGT--------TGTTGTAAAAAATGATAGTTAGATTGATATTTAAC 2201
||| ||||||||||| | ||||||||||||| |||||| ||||||||||||||
Sbjct 2082 GTCGAGTGTACATGAATCAGAGAGCTGTTGTAAAAAATAATAGTTGGATTGATATTTAAC 2141
Query 2202 CAATGCGATGGCATTTTATCCGAGTAAACAATCAATAACACTTTGTGTAGTGAGTA-AAA 2260
|||||||||||| |||||||||||||||||| || || |||||| | | |||||| |||
Sbjct 2142 CAATGCGATGGCTTTTTATCCGAGTAAACAAACACTAGCACTTTATCTCGTGAGTCTAAA 2201
Query 2261 TTTTGGTTAATTCAATAAACCAATGAC 2287
||||| |||| ||||||||||||||||
Sbjct 2202 TTTTGTTTAACTCAATAAACCAATGAC 2228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86160134190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5