BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01790.1
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477335 jgi|Araly1|477335|fgenesh2_kg.3__36__AT3G01790.2 1282 0.0
> Ahg477335 jgi|Araly1|477335|fgenesh2_kg.3__36__AT3G01790.2
Length=885
Score = 1282 bits (694), Expect = 0.0
Identities = 771/807 (96%), Gaps = 9/807 (1%)
Strand=Plus/Plus
Query 86 CTGAAGAACGATGGCGACTCAGGCTGCTGCTGCTGCCTCATTCAAGGGCAACTTAAAGAA 145
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 61 CTGAAGAACGATGGCGACTCAGGCTGCTGCCGCTGCCTCATTCAAGGGCAACTTGAAGAA 120
Query 146 AGCTGTGGCAGGTATAAAGCGTATCAATCTCGACGGTCTTCGTTGGCGTGTTTTTGATGC 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCTGTGGCAGGTATAAAGCGTATCAATCTCGACGGTCTTCGTTGGCGTGTTTTTGATGC 180
Query 206 CAGAGGCCAGGTTCTTGGTAGACTAGCTTCCCAGATATCAACCGTGCTTCAAGCCAAAGA 265
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 CAGAGGCCAGGTTCTTGGTAGACTAGCATCCCAGATATCAACCGTGCTTCAAGCCAAAGA 240
Query 266 TAAGCCTACTTATTGTCCTAACCGCGACGATGGCGATATTTGTATTGTTCTCAATGCTAA 325
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAAGCCTACTTATTGTCCAAACCGCGACGATGGCGATATTTGTATTGTTCTCAATGCTAA 300
Query 326 GGAAATCGGCTTCACAGGAAGAAAGCTCACTGACAAATTCTACCGTTGGCATACTGGGTA 385
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAAATTGGCTTCACTGGAAGAAAGCTCACTGACAAATTCTACCGTTGGCATACTGGGTA 360
Query 386 CATCGGACACCTGAAGGAACGGAGTCTGAAAGATCAGATGGCCAAAGATCCCACAGAGGT 445
||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 CATTGGACACCTCAAGGAACGGAGTCTCAAAGATCAGATGGCCAAAGATCCCACAGAGGT 420
Query 446 CATTCGTAAGGCTGTCTGGCGCATGCTTCCAAGTAACAATTTGCGTGATGACAGGGATCG 505
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATACGTAAGGCTGTCTGGCGCATGCTTCCAAGTAACAATTTGCGTGATGACAGGGATCG 480
Query 506 GAAGCTGAGGATATTTGAAGGCGGTGAGCATCCTTTTGGGGACAAGCCACTTGAGCCATT 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAGCTGAGGATATTTGAAGGCGGTGAGCATCCTTTTGGGGACAAGCCACTTGAGCCATT 540
Query 566 TGTGATGCCGCCTCGTAGAGTTAGAGAGATGCGACCGCGCGCAAGGCGAGCAATGATCCG 625
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGTGATGCCGCCTCGTAGAGTGAGAGAGATGCGACCGCGCGCAAGGCGAGCAATGATCCG 600
Query 626 TGCGCAGAAGAAGGCAGAGCAGGCAGAAAATGAGGGAACAGAGGTAAAGAAAGGAAAGAA 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGCGCAGAAGAAGGCAGAGCAGGCAGAAAATGAGGGAACAGAGGTAAAGAAAGGAAAGAA 660
Query 686 GAGGACCCTCTCTGAAGTACCTGCGTAGAGGAATTACTTCAGAGGAAAGCTAGTGATGTG 745
|||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 GAGGACCCCCTCTCAAGTAACTGCGTAGAGGAATTACTTCAGAGGAA-GCTAGTGATGTG 719
Query 746 ACT-GTCTTTTTATTTGTAAGCAAAGTTCATAATGCAGACGTGGATAAGCTTTTAAGGCT 804
||| ||||| | || ||||||||| ||||||||||||| ||| ||||||||| |||||||
Sbjct 720 ACTCGTCTTATCATCTGTAAGCAACGTTCATAATGCAGGCGTAGATAAGCTTGTAAGGCT 779
Query 805 TTCTTGTTTCT-------CAGACAATAAACCTGTTTCTGGATCTCAAACACTGTATCACA 857
||||||||| | |||||||||||||||||| ||||||||| ||| |||||||||
Sbjct 780 TTCTTGTTTATTGAATATCAGACAATAAACCTGTTTATGGATCTCAGACAATGTATCACA 839
Query 858 AATGAAGCCAAAACCATCTTCCTTAAA 884
|||||||||||||| |||||||||||
Sbjct 840 AATGAAGCCAAAACTGTCTTCCTTAAA 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5