BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01800.1
Length=1360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317013 jgi|Araly1|317013|fgenesh1_pm.C_scaffold_3000029 826 0.0
> Ahg317013 jgi|Araly1|317013|fgenesh1_pm.C_scaffold_3000029
Length=717
Score = 826 bits (447), Expect = 0.0
Identities = 523/558 (94%), Gaps = 12/558 (2%)
Strand=Plus/Plus
Query 159 ATGTTCGTGAGACGAGCTCTATCTAGTCGTAACGCGATTGGGTTTCTCAGAAGAAGCTCC 218
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTTAATGAGACGAGCTCTATCTAGTCGTAACGCGATTGGGTTTCTCAGAAGAAGCTCC 60
Query 219 ---GTTGTTGTTCAATCTCGTGATTTCTCCTTCATTTCTTCACCCAATCTCATGATGATG 275
||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||
Sbjct 61 GTTGTTGTTGTTCAATCTCGTGATTTCTCCATCATTTCTTCGCCCAA--TC-TGATGATG 117
Query 276 GGAGGCCGAGATCTGCAATTCGATTTGTCCATGCCCGATTTCCTCAGAGATTCTCGTCGA 335
| |||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 118 GTAGGCCGGGATTTGCAATTCGATATGTCCATGCCCGATTTCCTCAGAGATACTCGTCGA 177
Query 336 GGCTTTGCAAAAGGCAAAAAATCAAAGGACGATTCAGGAACAGGGATGGTCGACGCAGCT 395
||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 178 GGCTTCGCAAAAGGCAAAAAATCAAAGGGCGATT------CAGGGATGGTCGACGCAGCT 231
Query 396 CCAGATATCGGACCTACCGTGAAAGCAGCAGCCTCTTCTCAAATGGAGGCAGCCATTGAT 455
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CCAGATATCGGGCCTACCGTGAAAGCAGCAGCCTCTTCTCAAATGGAGGCAGCCATTGAT 291
Query 456 GCATTGTCCCGGGATTTAACTAAATTAAGAACCGGAAGAGCCGCTCCAGGAATGCTTGAT 515
|||||||| || ||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 292 GCATTGTCGCGTGATTTAACTAAATTAAGAACCGGTCGAGCAGCACCAGGAATGCTTGAT 351
Query 516 CATATTGTTGTTGAAACGGGAGGAGTAAAGATGCCACTCAATCACTTAGCTTTGGTCTCT 575
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 352 CATATTGTTGTTGAAACGGGGGGAGTAAAGATGCCACTCAATCACTTAGCTTTGGTCTCT 411
Query 576 GTCTTGGATCCTAAGACTCTCTCTGTCAATCCTTATGATCCCGATACGGTCAAAGAACTT 635
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 412 GTCTTGGATCCTAAGACTCTCTCTGTCAATCCATATGATCCCGATACGGTCAAAGAACTT 471
Query 636 GAGAAAGCAATAGTCGCGTCGCCATTAGGATTAAACCCGAAACTGGATGGGCAACGACTG 695
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 472 GAGAAAGCAATAGTTGCGTCTCCATTAGGATTAAACCCGAAACTGGATGGGCAACGACTG 531
Query 696 GTCGCATCTATCCCAGCA 713
|||||||| |||||||||
Sbjct 532 GTCGCATCAATCCCAGCA 549
Score = 265 bits (143), Expect = 8e-70
Identities = 149/152 (98%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 802 AGGCACTGGACACGATAAAGAAAGCAGGCTCGAGTCTACCAAAGGATGAAGTAAAAAGAC 861
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 566 AGGCACTGGACACGATAAAGAAAGCAGGCTCGAGCCTACCAAAGGATGAAGTAAAAAGAC 625
Query 862 TGGAGAAGGAAGTAGATGAGTTGACGAAGAAATTTGTGAAGTCAGCAGAGGACATGTGCA 921
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 626 TGGAGAAGGAAGTAGATGAGTTGACGAAGAAGTTTGTCAAGTCAGCAGAGGACATGTGCA 685
Query 922 AGTCCAAAGAGAAAGAGATCACCGAAGCCTGA 953
||||||||||||||||||||||||||||||||
Sbjct 686 AGTCCAAAGAGAAAGAGATCACCGAAGCCTGA 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50894094195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5