BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01820.1
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477332 jgi|Araly1|477332|fgenesh2_kg.3__33__AT3G01820.1 1454 0.0
> Ahg477332 jgi|Araly1|477332|fgenesh2_kg.3__33__AT3G01820.1
Length=1094
Score = 1454 bits (787), Expect = 0.0
Identities = 989/1081 (91%), Gaps = 36/1081 (3%)
Strand=Plus/Plus
Query 58 tctctttc-tctctttctctctGAATCCGCCGCCACGCCTTCACCATGGCCTGGCTTAGC 116
||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 32 TCTCTCTCTTCTCTTTCTCTCTGAATCCGCCGCCACGCCTTCACCATGGCTTGGCTAAGC 91
Query 117 CGCGTGAGAGGAGTT-TCGCCGGTGACAAGGCTCGCAGCGATTCGTCGATCTTTTGGATC 175
||||| ||||||||| | |||||| |||||||||||||||| |||||||| ||||||||
Sbjct 92 CGCGTCAGAGGAGTTGT-GCCGGTAACAAGGCTCGCAGCGACGCGTCGATCGTTTGGATC 150
Query 176 AGCGGCCGCGTTGGAGTTTGACTACGACTCCGATGACGAGTACTTGTACGGAGATGATCG 235
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 151 AGCGGCCGCCTTGGAGTTTGACTACGACTCCGACGACGAGTACTTGTACGGAGATGATGG 210
Query 236 CCGCCT-CGCGGAACCGAGGCTTGGGTTGGATGGATCGGGGCCGGATAGAGGAGTGCAGT 294
||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 CCG-TTGCGCGGAGCCGAGGCTTGGGTTGGATGGATCGGGGCCGGATAGAGGAGTGCAGT 269
Query 295 GGGTGCTTATGGGAGCCCCTGGAGCATGGAGGCACGTCTTCGCCGAGAGGCTCTCCAAAC 354
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 270 GGGTGCTCATGGGAGCCCCTGGAGCTTGGAGGCACGTCTTCGCCGAGAGGCTCTCCAAGC 329
Query 355 TGCTTGAAGTTCCTCACATTTCCATGGGGTCCCTTGTCCGTCAAGAACTCAACCCTAGAT 414
| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 330 TTCTTGAAGTTCCTCACATTTCCATGGGATCGCTTGTCCGTCAAGAACTCAACCCTAGAT 389
Query 415 CTTCTCTCTACAAGGAGATTGCAAGTGCTGTAAATGAACGAAAGCTGGTTCCAAAGAGTG 474
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 390 CTTCTCTCTACAAGGAGATTGCAAGTGCTGTAAATGAACGAAAGCTTGTTCCAAAGAGTG 449
Query 475 TTGTGTTTGCGTTGCTATCAAAGAGGCTCGAAGAAGGCTATGCA-AGAGGGGAAACTGGT 533
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 450 TTGTGTTTGCGTTGCTATCAAAGAGGCTCGAAGAAGGCTAT-CTTAGGGGGGAAACTGGT 508
Query 534 TTCATTCTTCATGGCATTCCTCGCACTCGTTTTCAAGCCGAAACTCTTGATCAAATCGCT 593
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 509 TTCATCCTTCATGGCATTCCCCGCACTCGTTTTCAAGCCGAAACTCTTGATCAAATCGCT 568
Query 594 CAGATTGACCTCGTTGTCAATCTCAAATGCTCTGAAGACCATCTGGTAAACCGGAATG-- 651
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 569 CAGATTGACCTTGTTGTCAATCTCAAATGCTCTGAAGAGCATCTGGTAAACCGAAATGCT 628
Query 652 --AAA-----CAGCTCTGCCTCAG-CAGGAGTTCCTCGGCTCTATGTTACACTCACCTGT 703
||| || ||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 629 CTAAATGATACATCTCTGCCG-AGGCAAGAGTTCCTCGGCTCTATGTTACACTCACCTGT 687
Query 704 TGCAATCAATGCTCGGAGGGAGAGTGTCGGTGTCTACGCACAGGAGGTGGAAGAATACTA 763
||||||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||||
Sbjct 688 TGCAATCAATGCTGGGAGGGAGACTCTCGGTGTCTACTCACAGGAGCTGGAAGAATACTA 747
Query 764 TAGGAAGCAGAGGAAACTGCTAGACTTTCATGTTGGCGGTGCCACATCAGCAGACACATG 823
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 748 CAGGAAGCAGAGGAAACTTCTAGACTTTCATGTTGGCGGTGCCACATCAGCAGAAACATG 807
Query 824 GCAGGGCTTGTTGGCAGCTTTACATCTGAAGCAGGTGAATTTGACGACTTCACAGAAGCT 883
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 808 GCAGGGCTTGTTGGCAGCTTTGCATCTGAAGCAGGTGAATTTGGCGACTTCACAGAAGCT 867
Query 884 AACTCTGTGATGATGAACTACAAAA--CAGAGCTTTGCTTTATAAA-TTTTGATCTTTCT 940
||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 868 GACTTTGTGATGATGAACTACAAAAGGCTGAGCTTTGCTTTATAAAATTTTGATCTTTCT 927
Query 941 CTCTCATTTTATGGGTCTTCTTAACCCCTAATATGCAACtttttttttgttttctttttC 1000
|| |||||||||||||||| || | | | ||||||||||||||| ||
Sbjct 928 CTTTCATTTTATGGGTCTTTTTTTT---T--T-T-----TTTTTTTTTGTTTTCAAAATC 976
Query 1001 TGTAATTCAAAGTTTTGCGAGAGATC-AAACGTGATGAGGATGATACCACTAAAGCTTGT 1059
|||||||||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 977 TGTAATTCAA-GTTTTGCGAGAGATCCAAA-GTGATGAGGATGATAC-ACTAAAGCTTGT 1033
Query 1060 AATGAGTCTATTATATATACAACAAAGATTTTCCATCTATGAAAAATAGTTCCTATATCA 1119
|||||||||||||||||||||||||| |||||||||||||||||| | |||||||| |||
Sbjct 1034 AATGAGTCTATTATATATACAACAAATATTTTCCATCTATGAAAAGTCGTTCCTATTTCA 1093
Query 1120 C 1120
|
Sbjct 1094 C 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744594115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5