BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01830.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477331 jgi|Araly1|477331|fgenesh2_kg.3__32__AT3G01840.1 654 0.0
Ahg927573 jgi|Araly1|927573|scaffold_300030.1 608 2e-173
> Ahg477331 jgi|Araly1|477331|fgenesh2_kg.3__32__AT3G01840.1
Length=1926
Score = 654 bits (354), Expect = 0.0
Identities = 413/442 (93%), Gaps = 2/442 (0%)
Strand=Plus/Minus
Query 640 CAATCTTGAAACCCTCTCTGCAATCTCAACCGCGCTCGGCCTTGACTCGGCTTCTTCTGC 699
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1866 CAATCTTGAAACCCTCTCTGCTATCTCAGCCGCGCTCGGCCTTGACTCGGCTTCTTCTGC 1807
Query 700 AGTACAATCTCTTGCAATACTTGCGATTTCAAACGCAGAATCAACCGAATAGCTCTCTCC 759
|||||||||||||||||||||||||| ||||| || ||||||| |||||||||||| ||
Sbjct 1806 AGTACAATCTCTTGCAATACTTGCGAGCTCAAATGCGGAATCAAGCGAATAGCTCTCCCC 1747
Query 760 CAATGTGCTGTCCATCACTTCCCTCAGCTTTTCCTTGTCCCCGAGAAGCCTTCTTAATCT 819
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1746 CAATGTGCTGTCCATCACTTCCCTCAGCTTTTCCTTGTCCCCGAGAACCCTTCTCAATCT 1687
Query 820 ACTCCATTCGGAAACAAAAGTTTCTTGTGTCCCAAGGGATGTTGTCTCTACTTCTTGCAA 879
||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1686 GCTCCATTCGGAAACACAAGTTTCTTCTATCCCAAGGGATGTTGTCTCTTGTTCTTGCAA 1627
Query 880 TCCAAGCAACATATCTGGGGTTTGTCCAGACAAAACCTCCATTACGATTATCCCGTAAGC 939
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1626 TCCAAGCAACATCTCTGGGGTTTGTCCAGACAAAACCTCCATTACGATAATCCCATAAGC 1567
Query 940 AAATATGTCAGAAGCTGGAGACAGTGAA-CTCTCTATAAGGTTCTCTTCTGTGGCTAATT 998
|||| |||||||||||||||||| ||| || ||||||||||||||||| || |||||||
Sbjct 1566 GAATACGTCAGAAGCTGGAGACAGGGAACCT-TCTATAAGGTTCTCTTCCGTCGCTAATT 1508
Query 999 CATTGGTTACGCACTTTGACATCCCAAAGTTTCCGACTTTACCTCTGAGATCTTCGTTCA 1058
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 CGTTGGTTAAGCACTTTGACATCCCAAAGTTTCCGACTTTACCTCTGAGATCTTCGTTCA 1448
Query 1059 AGAAGATGTTTCTGCTCTTGAT 1080
|||||||||| |||||||||||
Sbjct 1447 AGAAGATGTTCCTGCTCTTGAT 1426
Score = 106 bits (57), Expect = 4e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 542 CTACTCTTCTTTACCAAAGGCTTGTATGAACTCTCTGAAATTAAGGTACTCTCTCTATCT 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1926 CTACTCTTCTTTACCAAAGGCTTGTATGAACTCTCTGAAATTAAGGTACTCTCTCTCTCT 1867
> Ahg927573 jgi|Araly1|927573|scaffold_300030.1
Length=476
Score = 608 bits (329), Expect = 2e-173
Identities = 426/471 (90%), Gaps = 14/471 (3%)
Strand=Plus/Plus
Query 54 ATCTTCTATGAAGAGTGAGAACGTTAACAAACGTGATGAGTATCAACGAGTCTTTAGCTG 113
|||||| ||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 15 ATCTTCCATGAAGAGTGAAAACGTTAACAAACGTGACGACTATCAACGGGTCTTTAGCTG 74
Query 114 CTTTGACAAGAGCCACCAAGGCAAGGTATCTGTTTCTACAATCGAAAGATGCGTCGACGC 173
|||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||| ||
Sbjct 75 CTTTGACAGGAGCCACCAAGGGAAGGTATCCCTTTCTACCATCGAAAGATGCGTCGAAGC 134
Query 174 TATTAAGTCTGGCAAACGTGCAGTAGTTGATCAAGAAGATACTACAAATCCAAATCCAGA 233
||||||||||||||||||||||||| ||| | |||||||||||||||| ||||| |
Sbjct 135 TATTAAGTCTGGCAAACGTGCAGTACCTGA-C--CAAGATACTACAAATCCTAATCC--A 189
Query 234 GGAGTCGACTGATGATAAATCGTTGGAGCTCGAGGACTTCGTGAAGTTGGTGGAAGAAGG 293
||||| || |||||||||||||||||| ||||| ||||||||| |||||||| ||||
Sbjct 190 -GAGTCCAC---TGATAAATCGTTGGAGCTAGAGGAATTCGTGAAGCTGGTGGAACAAGG 245
Query 294 AGAGGAGGCAGACAAGGAGAAGGATTTGAAGGAAGCTTTCAAGTTGTATG-A-AGAG-AG 350
|||||||||||||||||||||||| | |||||||||||||||||||||| | |||| ||
Sbjct 246 AGAGGAGGCAGACAAGGAGAAGGACCTCAAGGAAGCTTTCAAGTTGTATGAAGAGAGTAG 305
Query 351 TGAAGGCATCACACCAAAAAGTTTGAAGAGGATGCTTAGTTTGTTGGGTGAGTCCAAAAG 410
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TGAAGGCATCACACCTAAAAGTTTGAAGAGGATGCTTAGTTTGTTGGGTGAGTCCAAAAG 365
Query 411 TCTCAAGGACTGCGAGGTTATGATTTCCCAATTCGATATTAATAGGGATGGAATTATCAA 470
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 366 TCTCAAGGATTGCGAGGTTATGATTTCGCAATTCGATATTAATAGGGATGGAATTATTAA 425
Query 471 CTTTGATGAGTTTAGGGCCATGATGCAATAACATATTC-AT-TAGTTACAA 519
|||||| |||||||||| |||||||||||||| || || || |||||||||
Sbjct 426 CTTTGACGAGTTTAGGGTCATGATGCAATAACTTAATCTATATAGTTACAA 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5