BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G01840.1
Length=1979
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477331 jgi|Araly1|477331|fgenesh2_kg.3__32__AT3G01840.1 2833 0.0
> Ahg477331 jgi|Araly1|477331|fgenesh2_kg.3__32__AT3G01840.1
Length=1926
Score = 2833 bits (1534), Expect = 0.0
Identities = 1758/1867 (94%), Gaps = 11/1867 (1%)
Strand=Plus/Plus
Query 12 GACATGGCTGTTTCAGTTAGTAAGCAGTACATGACAAGTCTTGTAGTGATCTTGCTCTTC 71
||||||||| |||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1 GACATGGCTATTTCAGTTAGTAAGCAGTTCAAAAAAAGTCTTGTAGTGATCTTGCTCTTC 60
Query 72 ATCTCCTTATCATCTCTCTCTCCAACTTCAACTTCACACAGCTGTGACCCTGT-C--GAA 128
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 61 ATCTCCTTATCATCGCTCTCTCCAACTTCAACTTCACACAGCTGTGACCCTGTACAAGAA 120
Query 129 GAAGAAGAAGAAGCCTCCTCCTTCGGTTACGTTTGCCACTCAAACCTCCAAAAGTGCCAC 188
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GAAGAAGAAGAAGCCTCCTCCTTCGGTTACGTTTGCCACTCAAACCTTCAAAAGTGCCAC 180
Query 189 ACTTTCGCCATTCTCAGAGCCAAACCTCCCTTCTATTCCCTCTCGGACCTGAGTCGCCAT 248
|||||||||||||||||||||||| |||| ||| | ||| |||| |||||||| ||||
Sbjct 181 ACTTTCGCCATTCTCAGAGCCAAATCTCCTTTCAACTCCATCTCCAACCTGAGTTACCAT 240
Query 249 CTTGGTCTCGACGCAGA--C-GACGAGTATGTTCCGAAAGGTCAGTTACTCTTGATCCCA 305
|| ||||| ||| |||| | ||||||| ||||| | ||||||||||||| |||||||||
Sbjct 241 CTAGGTCTAGACACAGAGGCAGACGAGTTTGTTCTGCAAGGTCAGTTACTGTTGATCCCA 300
Query 306 ATAGAGTGCAGGTGTAATGGAAGCATCTACGAGGCCAGTCTCATTAAAAATTGCGTTAAA 365
| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 301 GTTGAGTGCAGGTGTAATGGAAGCATCTACGAGGCCAATCTCATTAAAACTTGCGTTAAA 360
Query 366 GGAGACACCTTTCGCTCTGTCTCTCAGTCTCTGCAAGGCTTGACCACCTGCCTATCTATC 425
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 361 GGAGACACCTTTCGCTCTGTCTCTCAGTCTCTGCAAGGCTTGACCTCGTGCCTATCTATC 420
Query 426 AGAGAGAAGAATCCACATATTTCCGAAGACAAGCTTGGCGACAACATTAAACTGCGTTTG 485
|||||||| || ||| |||||||||| |||||| ||||||||||| |||| |||||||||
Sbjct 421 AGAGAGAAAAACCCAGATATTTCCGAGGACAAGATTGGCGACAACGTTAAGCTGCGTTTG 480
Query 486 GCGATCAGGTGCTCTTGTCCACAAGAAGGCGTTTCAAACGCTAGTTTTCTCGTTACGTAT 545
|||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 481 GCGATCAGGTGCTCCTGTCCACAAGAAGGCGTTTCAAACACTAGTTTTCTTGTGACGTAT 540
Query 546 CCGGTGGGCGTCCGCGACAGCGTTTCAAGCCTGGCGGTTAGGTTTAACACAACAGAGGAT 605
|||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 541 CCGGTGGGAGTCCGCGACAGCGTTACAAGCCTGGCGGTTAGGTTCAACACAACAGAGGAT 600
Query 606 GCCATTGTCTCTGCAAACAACAAATCTGGTGTGGTTCCACTCAAGCCTGCTCTCATCCCT 665
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GCCATTGTCTCTGCAAACAACAAATCTGGTGTCGTTCCACTCAAGCCTGCTCTCATCCCT 660
Query 666 CTTGATCACAAACCAGAGAAA--CAAGGATC-CCGGAAAAGAAATCCATCCAAGAAGAAA 722
||||||||||||||||||||| | || ||| || ||||||||| |||||||||||||||
Sbjct 661 CTTGATCACAAACCAGAGAAACCCGAGAATCGCCAGAAAAGAAAACCATCCAAGAAGAAA 720
Query 723 CGGTCAAAGATGAAGCTCATGATCGCTGTGAGCAGCGCGATTGCTGGAGTTTGCGGTCTT 782
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 721 CGGTCAAAGATGAAGCTCATGATCGCTGTGAGCAGCGCCATTGCTGGAGTTTTCGGTCTT 780
Query 783 GTCACTCTCATGGTGTTTGGTTACTTACACTGGAAGAAAGAGACGCAGATTCAAACGCAA 842
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GTCACTCTCATGGTGTTTGGTTACTTACACTGGAAGAAAGAGACGCAGATGCAAACGCAA 840
Query 843 ACGCAAAAGTGGATTAGCAACAAAGACCCCGAGACGCGGCAGCTGAGTCTGAGCATCCGA 902
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 ACGCAAAAGTGGATTAGCAACAAAGACCCCGAGACGCGGCAGCTGAGTCTAAGCATCCGA 900
Query 903 ACCACGAGTGACAAGAAAATCTCGTTTGAAGGGTCGCAGGACGGTTCCATCTTGGATTCT 962
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 901 ACCACGAGTGACAAGAAAATCTCGTTTGAAGGGTCACAGGACGGTTCCATCTTGGATTCT 960
Query 963 CACAACACCGTCGGCACCACAACGCCCCGAAAACCCGTTCTGGAGATTTACGCGTTTGAA 1022
|||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 961 CACAACACTGTCGGCACCACAACGCCGCGAAAACCTGTTCTGGAGATGTACGCGTTTGAA 1020
Query 1023 GAGTTAGAGAAGGCCACGGAGAATTTCAGTTCAAGCAATCACATCAAAGGTTCGGTTTAT 1082
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAGTTAGAGAAGGCCACTGAGAATTTCAGTTCAAGCAATCACATCAAAGGTTCGGTTTAT 1080
Query 1083 TTCGGTTCGCTCAAAGGCAAAGACTTGGCTATAAAGCAAGTCAATGCAGATGAAATGAAA 1142
||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 1081 TTCGGTTCGCTCAAAGGCAAAGACTTGGCTATAAAGCAAGTCAGTGCAGATGCAGTGAAA 1140
Query 1143 AGATTCGATTTCGGGCTTCTCAATGATCAGTCACACTACTATAACCACAATGTGATTAGG 1202
|| ||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||
Sbjct 1141 AGGTTCGATTTCGGGCTTCTGAACGATCAGTCACACTACTATAACCACAATCTGATTAGG 1200
Query 1203 GTTCTTGGAACATGTTTTAGAGAAATCGATCAAGATTCTTATCTGGTTTTCGAGTATGCA 1262
|||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 GTTCTTGGGACATGTTTTCCAGAAATCGATCAGGATTCTTATCTGGTTTTCGAGTATGCA 1260
Query 1263 AGGAATGGGTCCCTGTGGGATTGGATTCAGAACAAATTGGCCATCAAGAATCAATTCATC 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGGAATGGGTCCCTGTGGGATTGGATTCAGAACAAATTGGCCATCAAGAATCAATTCATC 1320
Query 1323 GAGTCTTGTTACTGTTTCTTGGCATGGAAACAGAGGATCAAGATATGTCACGATGTCGCC 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1321 GAGTCTTGTTACTGTTTCTTGGCATGGAAACAGAGGATCAAGATATGTCACGACGTCGCC 1380
Query 1383 ATCGCGTTAAAGTATATGCATCGGATCAACTACGTCCACGGCAACATCAAGAGCAGAAAC 1442
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1381 ATCGCGTTAAAGTATATGCATCGGATCAACTATGTCCACGGCAACATCAAGAGCAGGAAC 1440
Query 1443 ATCTTCTTGAACGAAGATCTCAGAGGTAAAGTCGGAAACTTTGGGATGTCAAAGTGCGTA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1441 ATCTTCTTGAACGAAGATCTCAGAGGTAAAGTCGGAAACTTTGGGATGTCAAAGTGCTTA 1500
Query 1503 ACCAATGAATTAGCCACAGAAGAGAACCTTATAGAGAG-TTCACTGTCTCCAGCTTCTGA 1561
||||| |||||||| || ||||||||||||||||| || ||| |||||||||||||||||
Sbjct 1501 ACCAACGAATTAGCGACGGAAGAGAACCTTATAGA-AGGTTCCCTGTCTCCAGCTTCTGA 1559
Query 1562 CATATTTGCTTACGGGATAATCGTAATGGAGGTTTTGTCTGGACAAACCCCAGATATGTT 1621
| |||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1560 CGTATTCGCTTATGGGATTATCGTAATGGAGGTTTTGTCTGGACAAACCCCAGAGATGTT 1619
Query 1622 GCTTGGATTGCAAGAAGTAGAGACAACATCCCTTGGGACACAAGAAACTTTTGTTTCCGA 1681
|||||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||
Sbjct 1620 GCTTGGATTGCAAGAACAAGAGACAACATCCCTTGGGATAGAAGAAACTTGTGTTTCCGA 1679
Query 1682 ATGGAGTAGATTAAGAAGGCTTCTCGGGGACAAGGAAAAGCTGAGGGAAGTGATGGACAG 1741
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATGGAGCAGATTGAGAAGGGTTCTCGGGGACAAGGAAAAGCTGAGGGAAGTGATGGACAG 1739
Query 1742 CACATTGGGAGAGAGCTATTCGGTTGATTCTGCGTTTGAAATCGCAAGTATTGCAAGAGA 1801
||||||||| |||||||||||| ||||||| || ||||| |||||||||||||||||||
Sbjct 1740 CACATTGGGGGAGAGCTATTCGCTTGATTCCGCATTTGAGCTCGCAAGTATTGCAAGAGA 1799
Query 1802 TTGTACTGCAGAAGAAGCCGAGTCAAGGCCGAGCGCGGTTGAGATTGCAGAGAGGGTTTC 1861
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1800 TTGTACTGCAGAAGAAGCCGAGTCAAGGCCGAGCGCGGCTGAGATAGCAGAGAGGGTTTC 1859
Query 1862 AAGATTG 1868
|||||||
Sbjct 1860 AAGATTG 1866
Score = 106 bits (57), Expect = 7e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1907 AGATAGAGAGAGTACCTTAATTTCAGAGAGTTCATACAAGCCTTTGGTAAAGAAGAGTAG 1966
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 AGAGAGAGAGAGTACCTTAATTTCAGAGAGTTCATACAAGCCTTTGGTAAAGAAGAGTAG 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74390248485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5